Identification of microsatellite markers associated with seed-coat darkening in common bean

Detalhes bibliográficos
Autor(a) principal: Couto, Karla Rodrigues
Data de Publicação: 2011
Outros Autores: Santos, João Bosco dos, Ramalho, Magno Antônio Patto, Silva, Graciele Simoneti da
Tipo de documento: Artigo
Idioma: por
Título da fonte: Pesquisa Agropecuária Brasileira (Online)
Texto Completo: https://seer.sct.embrapa.br/index.php/pab/article/view/8562
Resumo: The objective of this work was to indentify microsatellite markers linked to the quantitative trait loci (QTL) responsible for the late seed-coat darkening in the carioca type common bean, in order to reduce the evaluation time spent in selection for this trait. Data of seed-coat darkening of 185 F2:3 progenies derived from the cross VC-3 x 'BRSMG Majestoso', were used. Out of these data, two segregating DNA bulks were constructed to evaluate 444 SSR primers. The applicatives GQMOL and Sisvar were used to evaluate the segregations, elaborate the linkage groups, and to perform single mark and regression analysis (backward method). Eight markers were polymorphic in the DNA bulks. Six of them were mapped in a 80.49-cM linkage group. Out of these six markers, three were very close to the QTL responsible for the late grain darkening. The PVM02TC116 marker co-segregate with that QTL, and the PVESTBR-98 (2.00 cM) and PV176 (12.24 cM) ones flank it, which indicates that high efficiency in the assisted selection is possible.
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spelling Identification of microsatellite markers associated with seed-coat darkening in common beanIdentificação de marcadores microssatélites relacionados ao escurecimento de grãos em feijãoPhaseolus vulgaris; quantitative trait loci; molecular marker; assisted selection; SSRPhaseolus vulgaris; locos de características quantitativas; marcador molecular; seleção assistida; SSRThe objective of this work was to indentify microsatellite markers linked to the quantitative trait loci (QTL) responsible for the late seed-coat darkening in the carioca type common bean, in order to reduce the evaluation time spent in selection for this trait. Data of seed-coat darkening of 185 F2:3 progenies derived from the cross VC-3 x 'BRSMG Majestoso', were used. Out of these data, two segregating DNA bulks were constructed to evaluate 444 SSR primers. The applicatives GQMOL and Sisvar were used to evaluate the segregations, elaborate the linkage groups, and to perform single mark and regression analysis (backward method). Eight markers were polymorphic in the DNA bulks. Six of them were mapped in a 80.49-cM linkage group. Out of these six markers, three were very close to the QTL responsible for the late grain darkening. The PVM02TC116 marker co-segregate with that QTL, and the PVESTBR-98 (2.00 cM) and PV176 (12.24 cM) ones flank it, which indicates that high efficiency in the assisted selection is possible.O objetivo deste trabalho foi identificar marcadores microssatélites ligados ao loco de características quantitativas (QTL) responsável pelo escurecimento tardio do tegumento de feijões do tipo carioca, a fim de reduzir o tempo de avaliação necessário para seleção quanto a essa característica. Foram utilizados dados de avaliação fenotípica de 185 progênies F2:3 derivadas do cruzamento VC-3 x 'BRSMG Majestoso', para o estudo do controle genético do escurecimento dos grãos. Com esses dados, foram confeccionados dois "bulks" segregantes de DNA, empregados para a avaliação de 444 pares de primers SSR. Os aplicativos computacionais GQMOL e Sisvar foram utilizados para avaliar as segregações, confeccionar um grupo de ligação e realizar análises de marca simples e de regressão múltipla pelo método "backward". Oito marcadores apresentaram polimorfismo nos "bulks". Seis desses marcadores foram agrupados em um grupo de ligação de 80,49 cM, e destes, três mostraram-se estreitamente ligados ao QTL responsável pelo escurecimento tardio dos grãos. O marcador PVM02TC116 cossegregou com o QTL em questão, e os marcadores PVESTBR-98 (2,00 cM) e PV176 (12,24 cM) flanqueiam essa região, o que sugere elevada eficiência para possível uso na seleção assistida. Pesquisa Agropecuaria BrasileiraPesquisa Agropecuária BrasileiraCNPqCouto, Karla RodriguesSantos, João Bosco dosRamalho, Magno Antônio PattoSilva, Graciele Simoneti da2011-01-28info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionapplication/pdfhttps://seer.sct.embrapa.br/index.php/pab/article/view/8562Pesquisa Agropecuaria Brasileira; v.45, n.11, nov. 2010; 1268-1274Pesquisa Agropecuária Brasileira; v.45, n.11, nov. 2010; 1268-12741678-39210100-104xreponame:Pesquisa Agropecuária Brasileira (Online)instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)instacron:EMBRAPAporhttps://seer.sct.embrapa.br/index.php/pab/article/view/8562/6096info:eu-repo/semantics/openAccess2014-11-13T17:09:39Zoai:ojs.seer.sct.embrapa.br:article/8562Revistahttp://seer.sct.embrapa.br/index.php/pabPRIhttps://old.scielo.br/oai/scielo-oai.phppab@sct.embrapa.br || sct.pab@embrapa.br1678-39210100-204Xopendoar:2014-11-13T17:09:39Pesquisa Agropecuária Brasileira (Online) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa)false
dc.title.none.fl_str_mv Identification of microsatellite markers associated with seed-coat darkening in common bean
Identificação de marcadores microssatélites relacionados ao escurecimento de grãos em feijão
title Identification of microsatellite markers associated with seed-coat darkening in common bean
spellingShingle Identification of microsatellite markers associated with seed-coat darkening in common bean
Couto, Karla Rodrigues
Phaseolus vulgaris; quantitative trait loci; molecular marker; assisted selection; SSR
Phaseolus vulgaris; locos de características quantitativas; marcador molecular; seleção assistida; SSR
title_short Identification of microsatellite markers associated with seed-coat darkening in common bean
title_full Identification of microsatellite markers associated with seed-coat darkening in common bean
title_fullStr Identification of microsatellite markers associated with seed-coat darkening in common bean
title_full_unstemmed Identification of microsatellite markers associated with seed-coat darkening in common bean
title_sort Identification of microsatellite markers associated with seed-coat darkening in common bean
author Couto, Karla Rodrigues
author_facet Couto, Karla Rodrigues
Santos, João Bosco dos
Ramalho, Magno Antônio Patto
Silva, Graciele Simoneti da
author_role author
author2 Santos, João Bosco dos
Ramalho, Magno Antônio Patto
Silva, Graciele Simoneti da
author2_role author
author
author
dc.contributor.none.fl_str_mv
CNPq
dc.contributor.author.fl_str_mv Couto, Karla Rodrigues
Santos, João Bosco dos
Ramalho, Magno Antônio Patto
Silva, Graciele Simoneti da
dc.subject.por.fl_str_mv Phaseolus vulgaris; quantitative trait loci; molecular marker; assisted selection; SSR
Phaseolus vulgaris; locos de características quantitativas; marcador molecular; seleção assistida; SSR
topic Phaseolus vulgaris; quantitative trait loci; molecular marker; assisted selection; SSR
Phaseolus vulgaris; locos de características quantitativas; marcador molecular; seleção assistida; SSR
description The objective of this work was to indentify microsatellite markers linked to the quantitative trait loci (QTL) responsible for the late seed-coat darkening in the carioca type common bean, in order to reduce the evaluation time spent in selection for this trait. Data of seed-coat darkening of 185 F2:3 progenies derived from the cross VC-3 x 'BRSMG Majestoso', were used. Out of these data, two segregating DNA bulks were constructed to evaluate 444 SSR primers. The applicatives GQMOL and Sisvar were used to evaluate the segregations, elaborate the linkage groups, and to perform single mark and regression analysis (backward method). Eight markers were polymorphic in the DNA bulks. Six of them were mapped in a 80.49-cM linkage group. Out of these six markers, three were very close to the QTL responsible for the late grain darkening. The PVM02TC116 marker co-segregate with that QTL, and the PVESTBR-98 (2.00 cM) and PV176 (12.24 cM) ones flank it, which indicates that high efficiency in the assisted selection is possible.
publishDate 2011
dc.date.none.fl_str_mv 2011-01-28
dc.type.none.fl_str_mv
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/publishedVersion
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv https://seer.sct.embrapa.br/index.php/pab/article/view/8562
url https://seer.sct.embrapa.br/index.php/pab/article/view/8562
dc.language.iso.fl_str_mv por
language por
dc.relation.none.fl_str_mv https://seer.sct.embrapa.br/index.php/pab/article/view/8562/6096
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Pesquisa Agropecuaria Brasileira
Pesquisa Agropecuária Brasileira
publisher.none.fl_str_mv Pesquisa Agropecuaria Brasileira
Pesquisa Agropecuária Brasileira
dc.source.none.fl_str_mv Pesquisa Agropecuaria Brasileira; v.45, n.11, nov. 2010; 1268-1274
Pesquisa Agropecuária Brasileira; v.45, n.11, nov. 2010; 1268-1274
1678-3921
0100-104x
reponame:Pesquisa Agropecuária Brasileira (Online)
instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
instacron:EMBRAPA
instname_str Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
instacron_str EMBRAPA
institution EMBRAPA
reponame_str Pesquisa Agropecuária Brasileira (Online)
collection Pesquisa Agropecuária Brasileira (Online)
repository.name.fl_str_mv Pesquisa Agropecuária Brasileira (Online) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
repository.mail.fl_str_mv pab@sct.embrapa.br || sct.pab@embrapa.br
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