Wide genetic variability within and among families in a germplasm collection of jatropha curcas l. as revealed by microsatellite markers.

Detalhes bibliográficos
Autor(a) principal: FERNANDES, E. da C.
Data de Publicação: 2021
Outros Autores: DIAS, L. A. dos S., CAIXETA, E. T., CORRÊA, T. R., MUNIZ, D. R., ALMEIDA, O. F. de
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
Texto Completo: http://www.alice.cnptia.embrapa.br/alice/handle/doc/1139330
http://dx.doi.org/10.35418/2526-4117/v3n1a4
Resumo: J. curcas is a species with wide potential for biofuel production. However, there are few breeding programs and little information on its genetic structure. Studies indicate that the species has narrow genetic variability. We quantify genetic variability, and decomposing it within and among 28 families of a genebank by means of microsatellite markers. Thirty-nine pairs of primers were tested, of which six were polymorphic for a total of 18 alleles, with a mean of three alleles/locus. These six markers allowed genetic variability to be estimated within and among the families through estimates of PIC (0.36), expected (He=0.44) and observed (Ho=0.48) heterozygosity, inbreeding coefficient (f=-0.03), Shannon-Wiener index (H?=0.71), and the formation of 11 clusters. Bayesian analysis classified the families in four groups. The present study was the first to portray the formation of four groups and detect high genetic variability using only accessions from outside the main center of diversity of the species. Analysis of molecular variance showed that most of the variability (92.4%) is contained within families. There was low differentiation among the families (FST=0.07). Collection of genotypes within families should be prioritized because they are where greater variability is concentrated. This strategy was used in setting up the present genebank, which prioritized the collection of more plants per family, efficiently bringing together greater variability. For the first time, the diversity statistics revealed high genetic variability to be exploited in this collection, on the contrary to most studies with J. curcas that have claimed low genetic diversity in the species.
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spelling Wide genetic variability within and among families in a germplasm collection of jatropha curcas l. as revealed by microsatellite markers.Genetic varianceGermplasmJatrophaJ. curcas is a species with wide potential for biofuel production. However, there are few breeding programs and little information on its genetic structure. Studies indicate that the species has narrow genetic variability. We quantify genetic variability, and decomposing it within and among 28 families of a genebank by means of microsatellite markers. Thirty-nine pairs of primers were tested, of which six were polymorphic for a total of 18 alleles, with a mean of three alleles/locus. These six markers allowed genetic variability to be estimated within and among the families through estimates of PIC (0.36), expected (He=0.44) and observed (Ho=0.48) heterozygosity, inbreeding coefficient (f=-0.03), Shannon-Wiener index (H?=0.71), and the formation of 11 clusters. Bayesian analysis classified the families in four groups. The present study was the first to portray the formation of four groups and detect high genetic variability using only accessions from outside the main center of diversity of the species. Analysis of molecular variance showed that most of the variability (92.4%) is contained within families. There was low differentiation among the families (FST=0.07). Collection of genotypes within families should be prioritized because they are where greater variability is concentrated. This strategy was used in setting up the present genebank, which prioritized the collection of more plants per family, efficiently bringing together greater variability. For the first time, the diversity statistics revealed high genetic variability to be exploited in this collection, on the contrary to most studies with J. curcas that have claimed low genetic diversity in the species.ERIKA DA COSTA FERNANDES, UFV; LUIZ ANTÔNIO DOS SANTOS DIAS, UFV; EVELINE TEIXEIRA CAIXETA MOURA, CNPCa; THAIS ROSELI CORRÊA, UNIVERSIDADE ESTADUAL DO MARANHÃO; DANDARA REGO MUNIZ, UFV; ODIMAR FERREIRA DE ALMEIDA, UFV.FERNANDES, E. da C.DIAS, L. A. dos S.CAIXETA, E. T.CORRÊA, T. R.MUNIZ, D. R.ALMEIDA, O. F. de2022-01-26T16:01:44Z2022-01-26T16:01:44Z2022-01-262021info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleFunctional Plant Breeding Journal, v. 3, n. 1, 2021.http://www.alice.cnptia.embrapa.br/alice/handle/doc/1139330http://dx.doi.org/10.35418/2526-4117/v3n1a4enginfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)instacron:EMBRAPA2022-01-26T16:01:53Zoai:www.alice.cnptia.embrapa.br:doc/1139330Repositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestopendoar:21542022-01-26T16:01:53falseRepositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestcg-riaa@embrapa.bropendoar:21542022-01-26T16:01:53Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa)false
dc.title.none.fl_str_mv Wide genetic variability within and among families in a germplasm collection of jatropha curcas l. as revealed by microsatellite markers.
title Wide genetic variability within and among families in a germplasm collection of jatropha curcas l. as revealed by microsatellite markers.
spellingShingle Wide genetic variability within and among families in a germplasm collection of jatropha curcas l. as revealed by microsatellite markers.
FERNANDES, E. da C.
Genetic variance
Germplasm
Jatropha
title_short Wide genetic variability within and among families in a germplasm collection of jatropha curcas l. as revealed by microsatellite markers.
title_full Wide genetic variability within and among families in a germplasm collection of jatropha curcas l. as revealed by microsatellite markers.
title_fullStr Wide genetic variability within and among families in a germplasm collection of jatropha curcas l. as revealed by microsatellite markers.
title_full_unstemmed Wide genetic variability within and among families in a germplasm collection of jatropha curcas l. as revealed by microsatellite markers.
title_sort Wide genetic variability within and among families in a germplasm collection of jatropha curcas l. as revealed by microsatellite markers.
author FERNANDES, E. da C.
author_facet FERNANDES, E. da C.
DIAS, L. A. dos S.
CAIXETA, E. T.
CORRÊA, T. R.
MUNIZ, D. R.
ALMEIDA, O. F. de
author_role author
author2 DIAS, L. A. dos S.
CAIXETA, E. T.
CORRÊA, T. R.
MUNIZ, D. R.
ALMEIDA, O. F. de
author2_role author
author
author
author
author
dc.contributor.none.fl_str_mv ERIKA DA COSTA FERNANDES, UFV; LUIZ ANTÔNIO DOS SANTOS DIAS, UFV; EVELINE TEIXEIRA CAIXETA MOURA, CNPCa; THAIS ROSELI CORRÊA, UNIVERSIDADE ESTADUAL DO MARANHÃO; DANDARA REGO MUNIZ, UFV; ODIMAR FERREIRA DE ALMEIDA, UFV.
dc.contributor.author.fl_str_mv FERNANDES, E. da C.
DIAS, L. A. dos S.
CAIXETA, E. T.
CORRÊA, T. R.
MUNIZ, D. R.
ALMEIDA, O. F. de
dc.subject.por.fl_str_mv Genetic variance
Germplasm
Jatropha
topic Genetic variance
Germplasm
Jatropha
description J. curcas is a species with wide potential for biofuel production. However, there are few breeding programs and little information on its genetic structure. Studies indicate that the species has narrow genetic variability. We quantify genetic variability, and decomposing it within and among 28 families of a genebank by means of microsatellite markers. Thirty-nine pairs of primers were tested, of which six were polymorphic for a total of 18 alleles, with a mean of three alleles/locus. These six markers allowed genetic variability to be estimated within and among the families through estimates of PIC (0.36), expected (He=0.44) and observed (Ho=0.48) heterozygosity, inbreeding coefficient (f=-0.03), Shannon-Wiener index (H?=0.71), and the formation of 11 clusters. Bayesian analysis classified the families in four groups. The present study was the first to portray the formation of four groups and detect high genetic variability using only accessions from outside the main center of diversity of the species. Analysis of molecular variance showed that most of the variability (92.4%) is contained within families. There was low differentiation among the families (FST=0.07). Collection of genotypes within families should be prioritized because they are where greater variability is concentrated. This strategy was used in setting up the present genebank, which prioritized the collection of more plants per family, efficiently bringing together greater variability. For the first time, the diversity statistics revealed high genetic variability to be exploited in this collection, on the contrary to most studies with J. curcas that have claimed low genetic diversity in the species.
publishDate 2021
dc.date.none.fl_str_mv 2021
2022-01-26T16:01:44Z
2022-01-26T16:01:44Z
2022-01-26
dc.type.driver.fl_str_mv info:eu-repo/semantics/publishedVersion
info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv Functional Plant Breeding Journal, v. 3, n. 1, 2021.
http://www.alice.cnptia.embrapa.br/alice/handle/doc/1139330
http://dx.doi.org/10.35418/2526-4117/v3n1a4
identifier_str_mv Functional Plant Breeding Journal, v. 3, n. 1, 2021.
url http://www.alice.cnptia.embrapa.br/alice/handle/doc/1139330
http://dx.doi.org/10.35418/2526-4117/v3n1a4
dc.language.iso.fl_str_mv eng
language eng
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
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dc.source.none.fl_str_mv reponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
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instname_str Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
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reponame_str Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
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repository.mail.fl_str_mv cg-riaa@embrapa.br
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