Wide genetic variability within and among families in a germplasm collection of jatropha curcas l. as revealed by microsatellite markers.
Autor(a) principal: | |
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Data de Publicação: | 2021 |
Outros Autores: | , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) |
Texto Completo: | http://www.alice.cnptia.embrapa.br/alice/handle/doc/1139330 http://dx.doi.org/10.35418/2526-4117/v3n1a4 |
Resumo: | J. curcas is a species with wide potential for biofuel production. However, there are few breeding programs and little information on its genetic structure. Studies indicate that the species has narrow genetic variability. We quantify genetic variability, and decomposing it within and among 28 families of a genebank by means of microsatellite markers. Thirty-nine pairs of primers were tested, of which six were polymorphic for a total of 18 alleles, with a mean of three alleles/locus. These six markers allowed genetic variability to be estimated within and among the families through estimates of PIC (0.36), expected (He=0.44) and observed (Ho=0.48) heterozygosity, inbreeding coefficient (f=-0.03), Shannon-Wiener index (H?=0.71), and the formation of 11 clusters. Bayesian analysis classified the families in four groups. The present study was the first to portray the formation of four groups and detect high genetic variability using only accessions from outside the main center of diversity of the species. Analysis of molecular variance showed that most of the variability (92.4%) is contained within families. There was low differentiation among the families (FST=0.07). Collection of genotypes within families should be prioritized because they are where greater variability is concentrated. This strategy was used in setting up the present genebank, which prioritized the collection of more plants per family, efficiently bringing together greater variability. For the first time, the diversity statistics revealed high genetic variability to be exploited in this collection, on the contrary to most studies with J. curcas that have claimed low genetic diversity in the species. |
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Wide genetic variability within and among families in a germplasm collection of jatropha curcas l. as revealed by microsatellite markers.Genetic varianceGermplasmJatrophaJ. curcas is a species with wide potential for biofuel production. However, there are few breeding programs and little information on its genetic structure. Studies indicate that the species has narrow genetic variability. We quantify genetic variability, and decomposing it within and among 28 families of a genebank by means of microsatellite markers. Thirty-nine pairs of primers were tested, of which six were polymorphic for a total of 18 alleles, with a mean of three alleles/locus. These six markers allowed genetic variability to be estimated within and among the families through estimates of PIC (0.36), expected (He=0.44) and observed (Ho=0.48) heterozygosity, inbreeding coefficient (f=-0.03), Shannon-Wiener index (H?=0.71), and the formation of 11 clusters. Bayesian analysis classified the families in four groups. The present study was the first to portray the formation of four groups and detect high genetic variability using only accessions from outside the main center of diversity of the species. Analysis of molecular variance showed that most of the variability (92.4%) is contained within families. There was low differentiation among the families (FST=0.07). Collection of genotypes within families should be prioritized because they are where greater variability is concentrated. This strategy was used in setting up the present genebank, which prioritized the collection of more plants per family, efficiently bringing together greater variability. For the first time, the diversity statistics revealed high genetic variability to be exploited in this collection, on the contrary to most studies with J. curcas that have claimed low genetic diversity in the species.ERIKA DA COSTA FERNANDES, UFV; LUIZ ANTÔNIO DOS SANTOS DIAS, UFV; EVELINE TEIXEIRA CAIXETA MOURA, CNPCa; THAIS ROSELI CORRÊA, UNIVERSIDADE ESTADUAL DO MARANHÃO; DANDARA REGO MUNIZ, UFV; ODIMAR FERREIRA DE ALMEIDA, UFV.FERNANDES, E. da C.DIAS, L. A. dos S.CAIXETA, E. T.CORRÊA, T. R.MUNIZ, D. R.ALMEIDA, O. F. de2022-01-26T16:01:44Z2022-01-26T16:01:44Z2022-01-262021info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleFunctional Plant Breeding Journal, v. 3, n. 1, 2021.http://www.alice.cnptia.embrapa.br/alice/handle/doc/1139330http://dx.doi.org/10.35418/2526-4117/v3n1a4enginfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)instacron:EMBRAPA2022-01-26T16:01:53Zoai:www.alice.cnptia.embrapa.br:doc/1139330Repositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestopendoar:21542022-01-26T16:01:53falseRepositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestcg-riaa@embrapa.bropendoar:21542022-01-26T16:01:53Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa)false |
dc.title.none.fl_str_mv |
Wide genetic variability within and among families in a germplasm collection of jatropha curcas l. as revealed by microsatellite markers. |
title |
Wide genetic variability within and among families in a germplasm collection of jatropha curcas l. as revealed by microsatellite markers. |
spellingShingle |
Wide genetic variability within and among families in a germplasm collection of jatropha curcas l. as revealed by microsatellite markers. FERNANDES, E. da C. Genetic variance Germplasm Jatropha |
title_short |
Wide genetic variability within and among families in a germplasm collection of jatropha curcas l. as revealed by microsatellite markers. |
title_full |
Wide genetic variability within and among families in a germplasm collection of jatropha curcas l. as revealed by microsatellite markers. |
title_fullStr |
Wide genetic variability within and among families in a germplasm collection of jatropha curcas l. as revealed by microsatellite markers. |
title_full_unstemmed |
Wide genetic variability within and among families in a germplasm collection of jatropha curcas l. as revealed by microsatellite markers. |
title_sort |
Wide genetic variability within and among families in a germplasm collection of jatropha curcas l. as revealed by microsatellite markers. |
author |
FERNANDES, E. da C. |
author_facet |
FERNANDES, E. da C. DIAS, L. A. dos S. CAIXETA, E. T. CORRÊA, T. R. MUNIZ, D. R. ALMEIDA, O. F. de |
author_role |
author |
author2 |
DIAS, L. A. dos S. CAIXETA, E. T. CORRÊA, T. R. MUNIZ, D. R. ALMEIDA, O. F. de |
author2_role |
author author author author author |
dc.contributor.none.fl_str_mv |
ERIKA DA COSTA FERNANDES, UFV; LUIZ ANTÔNIO DOS SANTOS DIAS, UFV; EVELINE TEIXEIRA CAIXETA MOURA, CNPCa; THAIS ROSELI CORRÊA, UNIVERSIDADE ESTADUAL DO MARANHÃO; DANDARA REGO MUNIZ, UFV; ODIMAR FERREIRA DE ALMEIDA, UFV. |
dc.contributor.author.fl_str_mv |
FERNANDES, E. da C. DIAS, L. A. dos S. CAIXETA, E. T. CORRÊA, T. R. MUNIZ, D. R. ALMEIDA, O. F. de |
dc.subject.por.fl_str_mv |
Genetic variance Germplasm Jatropha |
topic |
Genetic variance Germplasm Jatropha |
description |
J. curcas is a species with wide potential for biofuel production. However, there are few breeding programs and little information on its genetic structure. Studies indicate that the species has narrow genetic variability. We quantify genetic variability, and decomposing it within and among 28 families of a genebank by means of microsatellite markers. Thirty-nine pairs of primers were tested, of which six were polymorphic for a total of 18 alleles, with a mean of three alleles/locus. These six markers allowed genetic variability to be estimated within and among the families through estimates of PIC (0.36), expected (He=0.44) and observed (Ho=0.48) heterozygosity, inbreeding coefficient (f=-0.03), Shannon-Wiener index (H?=0.71), and the formation of 11 clusters. Bayesian analysis classified the families in four groups. The present study was the first to portray the formation of four groups and detect high genetic variability using only accessions from outside the main center of diversity of the species. Analysis of molecular variance showed that most of the variability (92.4%) is contained within families. There was low differentiation among the families (FST=0.07). Collection of genotypes within families should be prioritized because they are where greater variability is concentrated. This strategy was used in setting up the present genebank, which prioritized the collection of more plants per family, efficiently bringing together greater variability. For the first time, the diversity statistics revealed high genetic variability to be exploited in this collection, on the contrary to most studies with J. curcas that have claimed low genetic diversity in the species. |
publishDate |
2021 |
dc.date.none.fl_str_mv |
2021 2022-01-26T16:01:44Z 2022-01-26T16:01:44Z 2022-01-26 |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/publishedVersion info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
Functional Plant Breeding Journal, v. 3, n. 1, 2021. http://www.alice.cnptia.embrapa.br/alice/handle/doc/1139330 http://dx.doi.org/10.35418/2526-4117/v3n1a4 |
identifier_str_mv |
Functional Plant Breeding Journal, v. 3, n. 1, 2021. |
url |
http://www.alice.cnptia.embrapa.br/alice/handle/doc/1139330 http://dx.doi.org/10.35418/2526-4117/v3n1a4 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.source.none.fl_str_mv |
reponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa) instacron:EMBRAPA |
instname_str |
Empresa Brasileira de Pesquisa Agropecuária (Embrapa) |
instacron_str |
EMBRAPA |
institution |
EMBRAPA |
reponame_str |
Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) |
collection |
Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) |
repository.name.fl_str_mv |
Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa) |
repository.mail.fl_str_mv |
cg-riaa@embrapa.br |
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1794503516891381760 |