Genetic variability revealed by microsatellite markers in a germplasm collection of Jatropha curcas L. in Brazil: an important plant for biofuels.

Detalhes bibliográficos
Autor(a) principal: SOUZA, R. de L.
Data de Publicação: 2019
Outros Autores: DIAS, L. A. dos S., CORRÊA, T. R., CAIXETA, E. T., FERNANDES, E. da C., MUNIZ, D. R., ROSMANINHO, L. B. de C., CARDOSO, P. M. R.
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
Texto Completo: http://www.alice.cnptia.embrapa.br/alice/handle/doc/1125515
http://dx.doi.org/10.1590/1984-70332019v19n3a46
Resumo: We evaluated the genetic variability of a collection of Jatropha curcas germplasm, represented by 93 accessions, using microsatellite markers. Among the 60 markers tested, five of them detected polymorphisms, with a total of 11 alleles and mean of 2.2 alleles per loci. These five markers enabled the quan-tification of genetic variability through estimates of expected (He=0.42) and observed (Ho=0.64) heterozygosity, Shannon-Weaver index (H?=0.62), coefficient of inbreeding (?=-0.44) and the formation of 11 clusters. Simultaneously, 14 accessions randomly sampled among the 93 and represented by seven plants each, were analyzed with these same five markers to quantify the within and between variability. Most of the genetic variation (92.58%) was contained within the accessions. These analyses revealed, for the first time, expressive genetic variability to be explored in this collection. The accessions UFVJC 05, 07, 12, 18, and 53 presented expressive variability among them with potential for the constitution of a base population for the breeding program.
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spelling Genetic variability revealed by microsatellite markers in a germplasm collection of Jatropha curcas L. in Brazil: an important plant for biofuels.Molecular markerGermplasm bankBiofuelJatropha CurcasVariabilityBreedingWe evaluated the genetic variability of a collection of Jatropha curcas germplasm, represented by 93 accessions, using microsatellite markers. Among the 60 markers tested, five of them detected polymorphisms, with a total of 11 alleles and mean of 2.2 alleles per loci. These five markers enabled the quan-tification of genetic variability through estimates of expected (He=0.42) and observed (Ho=0.64) heterozygosity, Shannon-Weaver index (H?=0.62), coefficient of inbreeding (?=-0.44) and the formation of 11 clusters. Simultaneously, 14 accessions randomly sampled among the 93 and represented by seven plants each, were analyzed with these same five markers to quantify the within and between variability. Most of the genetic variation (92.58%) was contained within the accessions. These analyses revealed, for the first time, expressive genetic variability to be explored in this collection. The accessions UFVJC 05, 07, 12, 18, and 53 presented expressive variability among them with potential for the constitution of a base population for the breeding program.Romero de Lima Souza, Universidade Federral de Viçosa; Luiz Antônio dos Santos Dias, Universidade Federal de Viçosa; Thais Roseli Corrêa, Universidade Estadual do Maranhão; EVELINE TEIXEIRA CAIXETA MOURA, CNPCa; Erika da Costa Fernandes, Universidade Federal de Viçosa; Dandara Rêgo Muniz, Universidade Federal de Viçosa; Lucas Barbosa de Castro Rosmaninho, Universidade Federal de Viçosa; Poliane Marcele Ribeiro Cardoso, Universidade Federal de Viçosa.SOUZA, R. de L.DIAS, L. A. dos S.CORRÊA, T. R.CAIXETA, E. T.FERNANDES, E. da C.MUNIZ, D. R.ROSMANINHO, L. B. de C.CARDOSO, P. M. R.2020-10-16T09:13:38Z2020-10-16T09:13:38Z2020-10-152019info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleCrop Breeding and Applied Biotechnology, v. 19, n. 3, p. 337-346, 2019.http://www.alice.cnptia.embrapa.br/alice/handle/doc/1125515http://dx.doi.org/10.1590/1984-70332019v19n3a46enginfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)instacron:EMBRAPA2020-10-16T09:13:45Zoai:www.alice.cnptia.embrapa.br:doc/1125515Repositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestopendoar:21542020-10-16T09:13:45falseRepositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestcg-riaa@embrapa.bropendoar:21542020-10-16T09:13:45Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa)false
dc.title.none.fl_str_mv Genetic variability revealed by microsatellite markers in a germplasm collection of Jatropha curcas L. in Brazil: an important plant for biofuels.
title Genetic variability revealed by microsatellite markers in a germplasm collection of Jatropha curcas L. in Brazil: an important plant for biofuels.
spellingShingle Genetic variability revealed by microsatellite markers in a germplasm collection of Jatropha curcas L. in Brazil: an important plant for biofuels.
SOUZA, R. de L.
Molecular marker
Germplasm bank
Biofuel
Jatropha Curcas
Variability
Breeding
title_short Genetic variability revealed by microsatellite markers in a germplasm collection of Jatropha curcas L. in Brazil: an important plant for biofuels.
title_full Genetic variability revealed by microsatellite markers in a germplasm collection of Jatropha curcas L. in Brazil: an important plant for biofuels.
title_fullStr Genetic variability revealed by microsatellite markers in a germplasm collection of Jatropha curcas L. in Brazil: an important plant for biofuels.
title_full_unstemmed Genetic variability revealed by microsatellite markers in a germplasm collection of Jatropha curcas L. in Brazil: an important plant for biofuels.
title_sort Genetic variability revealed by microsatellite markers in a germplasm collection of Jatropha curcas L. in Brazil: an important plant for biofuels.
author SOUZA, R. de L.
author_facet SOUZA, R. de L.
DIAS, L. A. dos S.
CORRÊA, T. R.
CAIXETA, E. T.
FERNANDES, E. da C.
MUNIZ, D. R.
ROSMANINHO, L. B. de C.
CARDOSO, P. M. R.
author_role author
author2 DIAS, L. A. dos S.
CORRÊA, T. R.
CAIXETA, E. T.
FERNANDES, E. da C.
MUNIZ, D. R.
ROSMANINHO, L. B. de C.
CARDOSO, P. M. R.
author2_role author
author
author
author
author
author
author
dc.contributor.none.fl_str_mv Romero de Lima Souza, Universidade Federral de Viçosa; Luiz Antônio dos Santos Dias, Universidade Federal de Viçosa; Thais Roseli Corrêa, Universidade Estadual do Maranhão; EVELINE TEIXEIRA CAIXETA MOURA, CNPCa; Erika da Costa Fernandes, Universidade Federal de Viçosa; Dandara Rêgo Muniz, Universidade Federal de Viçosa; Lucas Barbosa de Castro Rosmaninho, Universidade Federal de Viçosa; Poliane Marcele Ribeiro Cardoso, Universidade Federal de Viçosa.
dc.contributor.author.fl_str_mv SOUZA, R. de L.
DIAS, L. A. dos S.
CORRÊA, T. R.
CAIXETA, E. T.
FERNANDES, E. da C.
MUNIZ, D. R.
ROSMANINHO, L. B. de C.
CARDOSO, P. M. R.
dc.subject.por.fl_str_mv Molecular marker
Germplasm bank
Biofuel
Jatropha Curcas
Variability
Breeding
topic Molecular marker
Germplasm bank
Biofuel
Jatropha Curcas
Variability
Breeding
description We evaluated the genetic variability of a collection of Jatropha curcas germplasm, represented by 93 accessions, using microsatellite markers. Among the 60 markers tested, five of them detected polymorphisms, with a total of 11 alleles and mean of 2.2 alleles per loci. These five markers enabled the quan-tification of genetic variability through estimates of expected (He=0.42) and observed (Ho=0.64) heterozygosity, Shannon-Weaver index (H?=0.62), coefficient of inbreeding (?=-0.44) and the formation of 11 clusters. Simultaneously, 14 accessions randomly sampled among the 93 and represented by seven plants each, were analyzed with these same five markers to quantify the within and between variability. Most of the genetic variation (92.58%) was contained within the accessions. These analyses revealed, for the first time, expressive genetic variability to be explored in this collection. The accessions UFVJC 05, 07, 12, 18, and 53 presented expressive variability among them with potential for the constitution of a base population for the breeding program.
publishDate 2019
dc.date.none.fl_str_mv 2019
2020-10-16T09:13:38Z
2020-10-16T09:13:38Z
2020-10-15
dc.type.driver.fl_str_mv info:eu-repo/semantics/publishedVersion
info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv Crop Breeding and Applied Biotechnology, v. 19, n. 3, p. 337-346, 2019.
http://www.alice.cnptia.embrapa.br/alice/handle/doc/1125515
http://dx.doi.org/10.1590/1984-70332019v19n3a46
identifier_str_mv Crop Breeding and Applied Biotechnology, v. 19, n. 3, p. 337-346, 2019.
url http://www.alice.cnptia.embrapa.br/alice/handle/doc/1125515
http://dx.doi.org/10.1590/1984-70332019v19n3a46
dc.language.iso.fl_str_mv eng
language eng
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.source.none.fl_str_mv reponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
instacron:EMBRAPA
instname_str Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
instacron_str EMBRAPA
institution EMBRAPA
reponame_str Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
collection Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
repository.name.fl_str_mv Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
repository.mail.fl_str_mv cg-riaa@embrapa.br
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