Analyzes of mealybug (Pseudococcus longispinus) virome reveal grapevine viruses diversity.

Detalhes bibliográficos
Autor(a) principal: FAJARDO, T. V. M.
Data de Publicação: 2024
Outros Autores: GRYNBERG, P., TOGAWA, R. C., SILVA, J. M. F., SILVA, F. N. da, NICKEL, O.
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
Texto Completo: http://www.alice.cnptia.embrapa.br/alice/handle/doc/1162846
https://doi.org/10.1007/s40858-024-00647-3
Resumo: The long-tailed mealybug, Pseudococcus longispinus, is an important insect pest in grapevine growing areas in several countries, including Brazil. Metagenomic analysis of nucleic acids extracted from insect vectors makes it possible to study the diversity of insect viruses in addition to plant pathogenic viruses. In this study, insects (Ps. longispinus) were collected, and pooled throughout a plot of virus disease symptomatic vines, cultivated in growing beds, and analyzed by high throughput sequencing (HTS). The complete genome of grapevine leafroll-associated virus 2 and 3 (GLRaV-2 and -3) and a partial sequence of grapevine virus A (GVA) with two complete ORFs (coat protein and RNA-binding protein) were assembled from mealybug extracts and exhibited high nucleotide identities, up to 99%, with previously characterized homologous Brazilian isolates from grapevines. This information was validated by the detection of these viruses in the original symptomatic vines (N=76), from where mealybugs were collected, equivalent to an incidence of 34.2%, 89.5% and 36.8% for GLRaV-2, GLRaV-3 and GVA, respectively. Although one of these viruses is not transmitted by mealybugs (GLRaV-2), prospective of plant viruses infecting grapevine plants by analyzing the metagenome of insects could represent a relevant alternative to improve monitoring of viral diseases aiming at the management and control of viral diseases in vineyards or cultivation fields. This work is the first analysis of the Ps. longispinus virome in Brazil focusing on grapevine viruses.
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spelling Analyzes of mealybug (Pseudococcus longispinus) virome reveal grapevine viruses diversity.High throughput sequencingVectorClosterovirusAmpelovirusVitivirusThe long-tailed mealybug, Pseudococcus longispinus, is an important insect pest in grapevine growing areas in several countries, including Brazil. Metagenomic analysis of nucleic acids extracted from insect vectors makes it possible to study the diversity of insect viruses in addition to plant pathogenic viruses. In this study, insects (Ps. longispinus) were collected, and pooled throughout a plot of virus disease symptomatic vines, cultivated in growing beds, and analyzed by high throughput sequencing (HTS). The complete genome of grapevine leafroll-associated virus 2 and 3 (GLRaV-2 and -3) and a partial sequence of grapevine virus A (GVA) with two complete ORFs (coat protein and RNA-binding protein) were assembled from mealybug extracts and exhibited high nucleotide identities, up to 99%, with previously characterized homologous Brazilian isolates from grapevines. This information was validated by the detection of these viruses in the original symptomatic vines (N=76), from where mealybugs were collected, equivalent to an incidence of 34.2%, 89.5% and 36.8% for GLRaV-2, GLRaV-3 and GVA, respectively. Although one of these viruses is not transmitted by mealybugs (GLRaV-2), prospective of plant viruses infecting grapevine plants by analyzing the metagenome of insects could represent a relevant alternative to improve monitoring of viral diseases aiming at the management and control of viral diseases in vineyards or cultivation fields. This work is the first analysis of the Ps. longispinus virome in Brazil focusing on grapevine viruses.THOR VINICIUS MARTINS FAJARDO, CNPUV; PRISCILA GRYNBERG, Cenargen; ROBERTO COITI TOGAWA, Cenargen; JOÃO MARCOS FAGUNDES SILVA, INSTITUTE FOR INTEGRATIVE SYSTEMS BIOLOGY; FABIO NASCIMENTO DA SILVA, UNIVERSIDADE DO ESTADO DE SANTA CATARINA; OSMAR NICKEL, CNPUV.FAJARDO, T. V. M.GRYNBERG, P.TOGAWA, R. C.SILVA, J. M. F.SILVA, F. N. daNICKEL, O.2024-03-14T19:27:32Z2024-03-14T19:27:32Z2024-03-142024info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleTropical Plant Pathology, [online], March 2024.http://www.alice.cnptia.embrapa.br/alice/handle/doc/1162846https://doi.org/10.1007/s40858-024-00647-3enginfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)instacron:EMBRAPA2024-03-14T19:27:32Zoai:www.alice.cnptia.embrapa.br:doc/1162846Repositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestcg-riaa@embrapa.bropendoar:21542024-03-14T19:27:32Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa)false
dc.title.none.fl_str_mv Analyzes of mealybug (Pseudococcus longispinus) virome reveal grapevine viruses diversity.
title Analyzes of mealybug (Pseudococcus longispinus) virome reveal grapevine viruses diversity.
spellingShingle Analyzes of mealybug (Pseudococcus longispinus) virome reveal grapevine viruses diversity.
FAJARDO, T. V. M.
High throughput sequencing
Vector
Closterovirus
Ampelovirus
Vitivirus
title_short Analyzes of mealybug (Pseudococcus longispinus) virome reveal grapevine viruses diversity.
title_full Analyzes of mealybug (Pseudococcus longispinus) virome reveal grapevine viruses diversity.
title_fullStr Analyzes of mealybug (Pseudococcus longispinus) virome reveal grapevine viruses diversity.
title_full_unstemmed Analyzes of mealybug (Pseudococcus longispinus) virome reveal grapevine viruses diversity.
title_sort Analyzes of mealybug (Pseudococcus longispinus) virome reveal grapevine viruses diversity.
author FAJARDO, T. V. M.
author_facet FAJARDO, T. V. M.
GRYNBERG, P.
TOGAWA, R. C.
SILVA, J. M. F.
SILVA, F. N. da
NICKEL, O.
author_role author
author2 GRYNBERG, P.
TOGAWA, R. C.
SILVA, J. M. F.
SILVA, F. N. da
NICKEL, O.
author2_role author
author
author
author
author
dc.contributor.none.fl_str_mv THOR VINICIUS MARTINS FAJARDO, CNPUV; PRISCILA GRYNBERG, Cenargen; ROBERTO COITI TOGAWA, Cenargen; JOÃO MARCOS FAGUNDES SILVA, INSTITUTE FOR INTEGRATIVE SYSTEMS BIOLOGY; FABIO NASCIMENTO DA SILVA, UNIVERSIDADE DO ESTADO DE SANTA CATARINA; OSMAR NICKEL, CNPUV.
dc.contributor.author.fl_str_mv FAJARDO, T. V. M.
GRYNBERG, P.
TOGAWA, R. C.
SILVA, J. M. F.
SILVA, F. N. da
NICKEL, O.
dc.subject.por.fl_str_mv High throughput sequencing
Vector
Closterovirus
Ampelovirus
Vitivirus
topic High throughput sequencing
Vector
Closterovirus
Ampelovirus
Vitivirus
description The long-tailed mealybug, Pseudococcus longispinus, is an important insect pest in grapevine growing areas in several countries, including Brazil. Metagenomic analysis of nucleic acids extracted from insect vectors makes it possible to study the diversity of insect viruses in addition to plant pathogenic viruses. In this study, insects (Ps. longispinus) were collected, and pooled throughout a plot of virus disease symptomatic vines, cultivated in growing beds, and analyzed by high throughput sequencing (HTS). The complete genome of grapevine leafroll-associated virus 2 and 3 (GLRaV-2 and -3) and a partial sequence of grapevine virus A (GVA) with two complete ORFs (coat protein and RNA-binding protein) were assembled from mealybug extracts and exhibited high nucleotide identities, up to 99%, with previously characterized homologous Brazilian isolates from grapevines. This information was validated by the detection of these viruses in the original symptomatic vines (N=76), from where mealybugs were collected, equivalent to an incidence of 34.2%, 89.5% and 36.8% for GLRaV-2, GLRaV-3 and GVA, respectively. Although one of these viruses is not transmitted by mealybugs (GLRaV-2), prospective of plant viruses infecting grapevine plants by analyzing the metagenome of insects could represent a relevant alternative to improve monitoring of viral diseases aiming at the management and control of viral diseases in vineyards or cultivation fields. This work is the first analysis of the Ps. longispinus virome in Brazil focusing on grapevine viruses.
publishDate 2024
dc.date.none.fl_str_mv 2024-03-14T19:27:32Z
2024-03-14T19:27:32Z
2024-03-14
2024
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv Tropical Plant Pathology, [online], March 2024.
http://www.alice.cnptia.embrapa.br/alice/handle/doc/1162846
https://doi.org/10.1007/s40858-024-00647-3
identifier_str_mv Tropical Plant Pathology, [online], March 2024.
url http://www.alice.cnptia.embrapa.br/alice/handle/doc/1162846
https://doi.org/10.1007/s40858-024-00647-3
dc.language.iso.fl_str_mv eng
language eng
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.source.none.fl_str_mv reponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
instacron:EMBRAPA
instname_str Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
instacron_str EMBRAPA
institution EMBRAPA
reponame_str Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
collection Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
repository.name.fl_str_mv Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
repository.mail.fl_str_mv cg-riaa@embrapa.br
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