Machine learning prediction of multiple anthelmintic resistance and gastrointestinal nematode control in sheep flocks.
Autor(a) principal: | |
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Data de Publicação: | 2024 |
Outros Autores: | |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) |
Texto Completo: | http://www.alice.cnptia.embrapa.br/alice/handle/doc/1162930 |
Resumo: | The high prevalence of Haemonchus contortus and its anthelmintic resistance have affected sheep production worldwide. Machine learning approaches are able to investigate the complex relationships among the factors involved in resistance. Classification trees were built to predict multidrug resistance from 36 management practices in 27 sheep flocks. Resistance to five anthelmintics was assessed using a fecal egg count reduction test (FECRT), and 20 flocks with FECRT < 80% for four or five anthelmintics were considered resistant. The data were randomly split into training (75%) and test (25%) sets, resampled 1,000 times, and the classification trees were generated for the training data. Of the 1,000 trees, 24 (2.4%) showed 100% accuracy, sensitivity, and specificity in predicting a flock as resistant or susceptible for the test data. Forage species was a split common to all 24 trees, and the most frequent trees (12/24) were split by forage species, grazing pasture area, and fecal examination. The farming system, Suffolk sheep breed, and anthelmintic choice criteria were practices highlighted in the other trees. These management practices can be used to predict the anthelmintic resistance status and guide measures for gastrointestinal nematode control in sheep flocks. |
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Machine learning prediction of multiple anthelmintic resistance and gastrointestinal nematode control in sheep flocks.Machine learningMultidrug resistanceRandom forestCartsGastrointestinal nematodesThe high prevalence of Haemonchus contortus and its anthelmintic resistance have affected sheep production worldwide. Machine learning approaches are able to investigate the complex relationships among the factors involved in resistance. Classification trees were built to predict multidrug resistance from 36 management practices in 27 sheep flocks. Resistance to five anthelmintics was assessed using a fecal egg count reduction test (FECRT), and 20 flocks with FECRT < 80% for four or five anthelmintics were considered resistant. The data were randomly split into training (75%) and test (25%) sets, resampled 1,000 times, and the classification trees were generated for the training data. Of the 1,000 trees, 24 (2.4%) showed 100% accuracy, sensitivity, and specificity in predicting a flock as resistant or susceptible for the test data. Forage species was a split common to all 24 trees, and the most frequent trees (12/24) were split by forage species, grazing pasture area, and fecal examination. The farming system, Suffolk sheep breed, and anthelmintic choice criteria were practices highlighted in the other trees. These management practices can be used to predict the anthelmintic resistance status and guide measures for gastrointestinal nematode control in sheep flocks.SIMONE CRISTINA MEO NICIURA, CPPSE; GUILHERME MARTINELI SANCHES, Universidade de São Paulo.NICIURA, S. C. M.SANCHES, G. M.2024-03-18T18:32:33Z2024-03-18T18:32:33Z2024-03-182024info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleRevista Brasileira de Parasitologia Veterinária, v. 33, n. 1, jan./mar. 2024.http://www.alice.cnptia.embrapa.br/alice/handle/doc/116293010.1590/S1984-29612024014enginfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)instacron:EMBRAPA2024-03-18T18:32:33Zoai:www.alice.cnptia.embrapa.br:doc/1162930Repositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestopendoar:21542024-03-18T18:32:33falseRepositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestcg-riaa@embrapa.bropendoar:21542024-03-18T18:32:33Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa)false |
dc.title.none.fl_str_mv |
Machine learning prediction of multiple anthelmintic resistance and gastrointestinal nematode control in sheep flocks. |
title |
Machine learning prediction of multiple anthelmintic resistance and gastrointestinal nematode control in sheep flocks. |
spellingShingle |
Machine learning prediction of multiple anthelmintic resistance and gastrointestinal nematode control in sheep flocks. NICIURA, S. C. M. Machine learning Multidrug resistance Random forest Carts Gastrointestinal nematodes |
title_short |
Machine learning prediction of multiple anthelmintic resistance and gastrointestinal nematode control in sheep flocks. |
title_full |
Machine learning prediction of multiple anthelmintic resistance and gastrointestinal nematode control in sheep flocks. |
title_fullStr |
Machine learning prediction of multiple anthelmintic resistance and gastrointestinal nematode control in sheep flocks. |
title_full_unstemmed |
Machine learning prediction of multiple anthelmintic resistance and gastrointestinal nematode control in sheep flocks. |
title_sort |
Machine learning prediction of multiple anthelmintic resistance and gastrointestinal nematode control in sheep flocks. |
author |
NICIURA, S. C. M. |
author_facet |
NICIURA, S. C. M. SANCHES, G. M. |
author_role |
author |
author2 |
SANCHES, G. M. |
author2_role |
author |
dc.contributor.none.fl_str_mv |
SIMONE CRISTINA MEO NICIURA, CPPSE; GUILHERME MARTINELI SANCHES, Universidade de São Paulo. |
dc.contributor.author.fl_str_mv |
NICIURA, S. C. M. SANCHES, G. M. |
dc.subject.por.fl_str_mv |
Machine learning Multidrug resistance Random forest Carts Gastrointestinal nematodes |
topic |
Machine learning Multidrug resistance Random forest Carts Gastrointestinal nematodes |
description |
The high prevalence of Haemonchus contortus and its anthelmintic resistance have affected sheep production worldwide. Machine learning approaches are able to investigate the complex relationships among the factors involved in resistance. Classification trees were built to predict multidrug resistance from 36 management practices in 27 sheep flocks. Resistance to five anthelmintics was assessed using a fecal egg count reduction test (FECRT), and 20 flocks with FECRT < 80% for four or five anthelmintics were considered resistant. The data were randomly split into training (75%) and test (25%) sets, resampled 1,000 times, and the classification trees were generated for the training data. Of the 1,000 trees, 24 (2.4%) showed 100% accuracy, sensitivity, and specificity in predicting a flock as resistant or susceptible for the test data. Forage species was a split common to all 24 trees, and the most frequent trees (12/24) were split by forage species, grazing pasture area, and fecal examination. The farming system, Suffolk sheep breed, and anthelmintic choice criteria were practices highlighted in the other trees. These management practices can be used to predict the anthelmintic resistance status and guide measures for gastrointestinal nematode control in sheep flocks. |
publishDate |
2024 |
dc.date.none.fl_str_mv |
2024-03-18T18:32:33Z 2024-03-18T18:32:33Z 2024-03-18 2024 |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/publishedVersion info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
Revista Brasileira de Parasitologia Veterinária, v. 33, n. 1, jan./mar. 2024. http://www.alice.cnptia.embrapa.br/alice/handle/doc/1162930 10.1590/S1984-29612024014 |
identifier_str_mv |
Revista Brasileira de Parasitologia Veterinária, v. 33, n. 1, jan./mar. 2024. 10.1590/S1984-29612024014 |
url |
http://www.alice.cnptia.embrapa.br/alice/handle/doc/1162930 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.source.none.fl_str_mv |
reponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa) instacron:EMBRAPA |
instname_str |
Empresa Brasileira de Pesquisa Agropecuária (Embrapa) |
instacron_str |
EMBRAPA |
institution |
EMBRAPA |
reponame_str |
Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) |
collection |
Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) |
repository.name.fl_str_mv |
Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa) |
repository.mail.fl_str_mv |
cg-riaa@embrapa.br |
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1794503559005339648 |