An overall evaluation of the resistance (R) and pathogenesis-related (PR) superfamilies in soybean, as compared with Medicago and Arabidopsis.

Detalhes bibliográficos
Autor(a) principal: WANDERLEY-NOGUEIRA, A. C.
Data de Publicação: 2012
Outros Autores: BELARMINO, L. C., SOARES-CAVALCANTI, N. da M., BEZERRA-NETO, J. P., KIDO, E. A., PANDOLFI, V., ABDELNOOR, R. V., BINNECK, E., CARAZZOLE, M. F., BENKO-ISEPPON, A. M.
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
Texto Completo: http://www.alice.cnptia.embrapa.br/alice/handle/doc/926612
Resumo: Plants have the ability to recognize and respond to a multitude of pathogens, resulting in a massive reprogramming of the plant to activate defense responses including Resistance (R) and Pathogenesis-Related (PR) genes. Abiotic stresses can also activate PR genes and enhance pathogen resistance, representing valuable genes for breeding purposes. The present work offers an overview of soybean R and PR genes present in the GENOSOJA (Brazilian Soybean Genome Consortium) platform, regarding their structure, abundance, evolution and role in the plantpathogen metabolic pathway, as compared with Medicago and Arabidopsis. Searches revealed 3,065 R candidates (756 in Soybean, 1,142 in Medicago and 1,167 in Arabidopsis), and PR candidates matching to 1,261 sequences (310, 585 and 366 for the three species, respectively). The identified transcripts were also evaluated regarding their expression pattern in 65 libraries, showing prevalence in seeds and developing tissues. Upon consulting the SuperSAGE libraries, 1,072 R and 481 PR tags were identified in association with the different libraries. Multiple alignments were generated for Xa21 and PR-2 genes, allowing inferences about their evolution. The results revealed Medicago and Arabidopsis.
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spelling An overall evaluation of the resistance (R) and pathogenesis-related (PR) superfamilies in soybean, as compared with Medicago and Arabidopsis.BioinformáticaPathogen responseSojaResposta da plantaDoença de plantaGeneGenomaSoybeansBioinformaticsPlant diseases and disordersGenomeGenesbiotic stressPlants have the ability to recognize and respond to a multitude of pathogens, resulting in a massive reprogramming of the plant to activate defense responses including Resistance (R) and Pathogenesis-Related (PR) genes. Abiotic stresses can also activate PR genes and enhance pathogen resistance, representing valuable genes for breeding purposes. The present work offers an overview of soybean R and PR genes present in the GENOSOJA (Brazilian Soybean Genome Consortium) platform, regarding their structure, abundance, evolution and role in the plantpathogen metabolic pathway, as compared with Medicago and Arabidopsis. Searches revealed 3,065 R candidates (756 in Soybean, 1,142 in Medicago and 1,167 in Arabidopsis), and PR candidates matching to 1,261 sequences (310, 585 and 366 for the three species, respectively). The identified transcripts were also evaluated regarding their expression pattern in 65 libraries, showing prevalence in seeds and developing tissues. Upon consulting the SuperSAGE libraries, 1,072 R and 481 PR tags were identified in association with the different libraries. Multiple alignments were generated for Xa21 and PR-2 genes, allowing inferences about their evolution. The results revealed Medicago and Arabidopsis.ANA C. WANDERLEY NOGUEIRA, UFPE; LUIS C. BELARMINO, UFPE; NINA DA M. SOARES-CAVALCANTI, UFPE; JOÃO P. BEZERRA-NETO, UFPE; EDERSON A. KIDO, UFPE; VALESCA PANDOLFI, UFPE; RICARDO VILELA ABDELNOOR, CNPSO; ELISEU BINNECK, CNPSO; MARCELO F. CARAZZOLE, UNICAMP; ANA M. BENKO-ISEPPON, UFPE.WANDERLEY-NOGUEIRA, A. C.BELARMINO, L. C.SOARES-CAVALCANTI, N. da M.BEZERRA-NETO, J. P.KIDO, E. A.PANDOLFI, V.ABDELNOOR, R. V.BINNECK, E.CARAZZOLE, M. F.BENKO-ISEPPON, A. M.2015-08-20T05:51:38Z2015-08-20T05:51:38Z2012-06-1820122015-08-20T05:51:38Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleGenetics and Molecular Biology, Ribeirão Preto, v. 35, n. 1, suppl., p. 260-271, May 2012.http://www.alice.cnptia.embrapa.br/alice/handle/doc/926612enginfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)instacron:EMBRAPA2017-08-16T02:30:36Zoai:www.alice.cnptia.embrapa.br:doc/926612Repositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestopendoar:21542017-08-16T02:30:36falseRepositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestcg-riaa@embrapa.bropendoar:21542017-08-16T02:30:36Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa)false
dc.title.none.fl_str_mv An overall evaluation of the resistance (R) and pathogenesis-related (PR) superfamilies in soybean, as compared with Medicago and Arabidopsis.
title An overall evaluation of the resistance (R) and pathogenesis-related (PR) superfamilies in soybean, as compared with Medicago and Arabidopsis.
spellingShingle An overall evaluation of the resistance (R) and pathogenesis-related (PR) superfamilies in soybean, as compared with Medicago and Arabidopsis.
WANDERLEY-NOGUEIRA, A. C.
Bioinformática
Pathogen response
Soja
Resposta da planta
Doença de planta
Gene
Genoma
Soybeans
Bioinformatics
Plant diseases and disorders
Genome
Genes
biotic stress
title_short An overall evaluation of the resistance (R) and pathogenesis-related (PR) superfamilies in soybean, as compared with Medicago and Arabidopsis.
title_full An overall evaluation of the resistance (R) and pathogenesis-related (PR) superfamilies in soybean, as compared with Medicago and Arabidopsis.
title_fullStr An overall evaluation of the resistance (R) and pathogenesis-related (PR) superfamilies in soybean, as compared with Medicago and Arabidopsis.
title_full_unstemmed An overall evaluation of the resistance (R) and pathogenesis-related (PR) superfamilies in soybean, as compared with Medicago and Arabidopsis.
title_sort An overall evaluation of the resistance (R) and pathogenesis-related (PR) superfamilies in soybean, as compared with Medicago and Arabidopsis.
author WANDERLEY-NOGUEIRA, A. C.
author_facet WANDERLEY-NOGUEIRA, A. C.
BELARMINO, L. C.
SOARES-CAVALCANTI, N. da M.
BEZERRA-NETO, J. P.
KIDO, E. A.
PANDOLFI, V.
ABDELNOOR, R. V.
BINNECK, E.
CARAZZOLE, M. F.
BENKO-ISEPPON, A. M.
author_role author
author2 BELARMINO, L. C.
SOARES-CAVALCANTI, N. da M.
BEZERRA-NETO, J. P.
KIDO, E. A.
PANDOLFI, V.
ABDELNOOR, R. V.
BINNECK, E.
CARAZZOLE, M. F.
BENKO-ISEPPON, A. M.
author2_role author
author
author
author
author
author
author
author
author
dc.contributor.none.fl_str_mv ANA C. WANDERLEY NOGUEIRA, UFPE; LUIS C. BELARMINO, UFPE; NINA DA M. SOARES-CAVALCANTI, UFPE; JOÃO P. BEZERRA-NETO, UFPE; EDERSON A. KIDO, UFPE; VALESCA PANDOLFI, UFPE; RICARDO VILELA ABDELNOOR, CNPSO; ELISEU BINNECK, CNPSO; MARCELO F. CARAZZOLE, UNICAMP; ANA M. BENKO-ISEPPON, UFPE.
dc.contributor.author.fl_str_mv WANDERLEY-NOGUEIRA, A. C.
BELARMINO, L. C.
SOARES-CAVALCANTI, N. da M.
BEZERRA-NETO, J. P.
KIDO, E. A.
PANDOLFI, V.
ABDELNOOR, R. V.
BINNECK, E.
CARAZZOLE, M. F.
BENKO-ISEPPON, A. M.
dc.subject.por.fl_str_mv Bioinformática
Pathogen response
Soja
Resposta da planta
Doença de planta
Gene
Genoma
Soybeans
Bioinformatics
Plant diseases and disorders
Genome
Genes
biotic stress
topic Bioinformática
Pathogen response
Soja
Resposta da planta
Doença de planta
Gene
Genoma
Soybeans
Bioinformatics
Plant diseases and disorders
Genome
Genes
biotic stress
description Plants have the ability to recognize and respond to a multitude of pathogens, resulting in a massive reprogramming of the plant to activate defense responses including Resistance (R) and Pathogenesis-Related (PR) genes. Abiotic stresses can also activate PR genes and enhance pathogen resistance, representing valuable genes for breeding purposes. The present work offers an overview of soybean R and PR genes present in the GENOSOJA (Brazilian Soybean Genome Consortium) platform, regarding their structure, abundance, evolution and role in the plantpathogen metabolic pathway, as compared with Medicago and Arabidopsis. Searches revealed 3,065 R candidates (756 in Soybean, 1,142 in Medicago and 1,167 in Arabidopsis), and PR candidates matching to 1,261 sequences (310, 585 and 366 for the three species, respectively). The identified transcripts were also evaluated regarding their expression pattern in 65 libraries, showing prevalence in seeds and developing tissues. Upon consulting the SuperSAGE libraries, 1,072 R and 481 PR tags were identified in association with the different libraries. Multiple alignments were generated for Xa21 and PR-2 genes, allowing inferences about their evolution. The results revealed Medicago and Arabidopsis.
publishDate 2012
dc.date.none.fl_str_mv 2012-06-18
2012
2015-08-20T05:51:38Z
2015-08-20T05:51:38Z
2015-08-20T05:51:38Z
dc.type.driver.fl_str_mv info:eu-repo/semantics/publishedVersion
info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv Genetics and Molecular Biology, Ribeirão Preto, v. 35, n. 1, suppl., p. 260-271, May 2012.
http://www.alice.cnptia.embrapa.br/alice/handle/doc/926612
identifier_str_mv Genetics and Molecular Biology, Ribeirão Preto, v. 35, n. 1, suppl., p. 260-271, May 2012.
url http://www.alice.cnptia.embrapa.br/alice/handle/doc/926612
dc.language.iso.fl_str_mv eng
language eng
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.source.none.fl_str_mv reponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
instacron:EMBRAPA
instname_str Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
instacron_str EMBRAPA
institution EMBRAPA
reponame_str Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
collection Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
repository.name.fl_str_mv Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
repository.mail.fl_str_mv cg-riaa@embrapa.br
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