In silico identification of known osmotic stress responsive genes from Arabidopsis in soybean and Medicago.
Autor(a) principal: | |
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Data de Publicação: | 2012 |
Outros Autores: | , , , , , , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) |
Texto Completo: | http://www.alice.cnptia.embrapa.br/alice/handle/doc/926644 |
Resumo: | Plants experience various environmental stresses, but tolerance to these adverse conditions is a very complex phenomenon. The present research aimed to evaluate a set of genes involved in osmotic response, comparing soybean and medicago with the well-described Arabidopsis thaliana model plant. Based on 103 Arabidopsis proteins from 27 categories of osmotic stress response, comparative analyses against Genosoja and Medicago truncatula databases allowed the identification of 1,088 soybean and 1,210 Medicago sequences. The analysis showed a high number of sequences and high diversity, comprising genes from all categories in both organisms. Genes with unknown function were among the most representative, followed by transcription factors, ion transport proteins, water channel, plant defense, protein degradation, cellular structure, organization & biogenesis and senescence. An analysis of sequences with unknown function allowed the annotation of 174 soybean and 217 Medicago sequences, most of them concerning transcription factors. However, for about 30% of the sequences no function could be attributed using in silico procedures. The establishment of a gene set involved in osmotic stress responses in soybean and barrel medic will help to better understand the survival mechanisms for this type of stress condition in legumes. |
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In silico identification of known osmotic stress responsive genes from Arabidopsis in soybean and Medicago.Stress-responsive genesSojaGenomaGeneStressSoybeansGenesPlant stressosmotic stressPlants experience various environmental stresses, but tolerance to these adverse conditions is a very complex phenomenon. The present research aimed to evaluate a set of genes involved in osmotic response, comparing soybean and medicago with the well-described Arabidopsis thaliana model plant. Based on 103 Arabidopsis proteins from 27 categories of osmotic stress response, comparative analyses against Genosoja and Medicago truncatula databases allowed the identification of 1,088 soybean and 1,210 Medicago sequences. The analysis showed a high number of sequences and high diversity, comprising genes from all categories in both organisms. Genes with unknown function were among the most representative, followed by transcription factors, ion transport proteins, water channel, plant defense, protein degradation, cellular structure, organization & biogenesis and senescence. An analysis of sequences with unknown function allowed the annotation of 174 soybean and 217 Medicago sequences, most of them concerning transcription factors. However, for about 30% of the sequences no function could be attributed using in silico procedures. The establishment of a gene set involved in osmotic stress responses in soybean and barrel medic will help to better understand the survival mechanisms for this type of stress condition in legumes.NINA M. SOARES CAVALCANTI, UFPE; LUIS C. BELARMINO, UFPE; EDERSON A. KIDO, UFPE; ANA C. WANDERLEY NOGUEIRA, UFPE; JOÃO P. BEZERRA NETO, UFPE; RAFAELA CAVALCANTI LIRA, UFPE; VALESCA PANDOLFI, UFPE; ALEXANDRE LIMA NEPOMUCENO, SRI; RICARDO VILELA ABDELNOOR, CNPSO; LEANDRO C. NASCIMENTO, UNICAMP; ANA M. BENKO-ISEPPON, UFPE.SOARES-CAVALCANTI, N. N.BELARMINO, L. C.KIDO, E. A.WANDERLEY-NOGUEIRA, A. C.BEZERRA-NETO, J. P.CAVALCANTI-LIRA, R.PANDOLFI, V.NEPOMUCENO, A. L.ABDELNOOR, R. V.NASCIMENTO, L. C.BENKO-ISEPPON, A. M.2015-08-20T05:51:50Z2015-08-20T05:51:50Z2012-06-1920122015-08-20T05:51:50Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleGenetics and Molecular Biology, Ribeirão Preto, v. 35, n. 1, suppl., p. 315-321, May 2012.http://www.alice.cnptia.embrapa.br/alice/handle/doc/926644enginfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)instacron:EMBRAPA2017-08-16T02:30:36Zoai:www.alice.cnptia.embrapa.br:doc/926644Repositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestopendoar:21542017-08-16T02:30:36falseRepositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestcg-riaa@embrapa.bropendoar:21542017-08-16T02:30:36Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa)false |
dc.title.none.fl_str_mv |
In silico identification of known osmotic stress responsive genes from Arabidopsis in soybean and Medicago. |
title |
In silico identification of known osmotic stress responsive genes from Arabidopsis in soybean and Medicago. |
spellingShingle |
In silico identification of known osmotic stress responsive genes from Arabidopsis in soybean and Medicago. SOARES-CAVALCANTI, N. N. Stress-responsive genes Soja Genoma Gene Stress Soybeans Genes Plant stress osmotic stress |
title_short |
In silico identification of known osmotic stress responsive genes from Arabidopsis in soybean and Medicago. |
title_full |
In silico identification of known osmotic stress responsive genes from Arabidopsis in soybean and Medicago. |
title_fullStr |
In silico identification of known osmotic stress responsive genes from Arabidopsis in soybean and Medicago. |
title_full_unstemmed |
In silico identification of known osmotic stress responsive genes from Arabidopsis in soybean and Medicago. |
title_sort |
In silico identification of known osmotic stress responsive genes from Arabidopsis in soybean and Medicago. |
author |
SOARES-CAVALCANTI, N. N. |
author_facet |
SOARES-CAVALCANTI, N. N. BELARMINO, L. C. KIDO, E. A. WANDERLEY-NOGUEIRA, A. C. BEZERRA-NETO, J. P. CAVALCANTI-LIRA, R. PANDOLFI, V. NEPOMUCENO, A. L. ABDELNOOR, R. V. NASCIMENTO, L. C. BENKO-ISEPPON, A. M. |
author_role |
author |
author2 |
BELARMINO, L. C. KIDO, E. A. WANDERLEY-NOGUEIRA, A. C. BEZERRA-NETO, J. P. CAVALCANTI-LIRA, R. PANDOLFI, V. NEPOMUCENO, A. L. ABDELNOOR, R. V. NASCIMENTO, L. C. BENKO-ISEPPON, A. M. |
author2_role |
author author author author author author author author author author |
dc.contributor.none.fl_str_mv |
NINA M. SOARES CAVALCANTI, UFPE; LUIS C. BELARMINO, UFPE; EDERSON A. KIDO, UFPE; ANA C. WANDERLEY NOGUEIRA, UFPE; JOÃO P. BEZERRA NETO, UFPE; RAFAELA CAVALCANTI LIRA, UFPE; VALESCA PANDOLFI, UFPE; ALEXANDRE LIMA NEPOMUCENO, SRI; RICARDO VILELA ABDELNOOR, CNPSO; LEANDRO C. NASCIMENTO, UNICAMP; ANA M. BENKO-ISEPPON, UFPE. |
dc.contributor.author.fl_str_mv |
SOARES-CAVALCANTI, N. N. BELARMINO, L. C. KIDO, E. A. WANDERLEY-NOGUEIRA, A. C. BEZERRA-NETO, J. P. CAVALCANTI-LIRA, R. PANDOLFI, V. NEPOMUCENO, A. L. ABDELNOOR, R. V. NASCIMENTO, L. C. BENKO-ISEPPON, A. M. |
dc.subject.por.fl_str_mv |
Stress-responsive genes Soja Genoma Gene Stress Soybeans Genes Plant stress osmotic stress |
topic |
Stress-responsive genes Soja Genoma Gene Stress Soybeans Genes Plant stress osmotic stress |
description |
Plants experience various environmental stresses, but tolerance to these adverse conditions is a very complex phenomenon. The present research aimed to evaluate a set of genes involved in osmotic response, comparing soybean and medicago with the well-described Arabidopsis thaliana model plant. Based on 103 Arabidopsis proteins from 27 categories of osmotic stress response, comparative analyses against Genosoja and Medicago truncatula databases allowed the identification of 1,088 soybean and 1,210 Medicago sequences. The analysis showed a high number of sequences and high diversity, comprising genes from all categories in both organisms. Genes with unknown function were among the most representative, followed by transcription factors, ion transport proteins, water channel, plant defense, protein degradation, cellular structure, organization & biogenesis and senescence. An analysis of sequences with unknown function allowed the annotation of 174 soybean and 217 Medicago sequences, most of them concerning transcription factors. However, for about 30% of the sequences no function could be attributed using in silico procedures. The establishment of a gene set involved in osmotic stress responses in soybean and barrel medic will help to better understand the survival mechanisms for this type of stress condition in legumes. |
publishDate |
2012 |
dc.date.none.fl_str_mv |
2012-06-19 2012 2015-08-20T05:51:50Z 2015-08-20T05:51:50Z 2015-08-20T05:51:50Z |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/publishedVersion info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
Genetics and Molecular Biology, Ribeirão Preto, v. 35, n. 1, suppl., p. 315-321, May 2012. http://www.alice.cnptia.embrapa.br/alice/handle/doc/926644 |
identifier_str_mv |
Genetics and Molecular Biology, Ribeirão Preto, v. 35, n. 1, suppl., p. 315-321, May 2012. |
url |
http://www.alice.cnptia.embrapa.br/alice/handle/doc/926644 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.source.none.fl_str_mv |
reponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa) instacron:EMBRAPA |
instname_str |
Empresa Brasileira de Pesquisa Agropecuária (Embrapa) |
instacron_str |
EMBRAPA |
institution |
EMBRAPA |
reponame_str |
Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) |
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Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) |
repository.name.fl_str_mv |
Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa) |
repository.mail.fl_str_mv |
cg-riaa@embrapa.br |
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1794503409787731968 |