Deciphering rhizosphere microbiome assembly of wild and modern common bean (Phaseolus vulgaris) in native and agricultural soils from Colombia.
Autor(a) principal: | |
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Data de Publicação: | 2019 |
Outros Autores: | , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) |
Texto Completo: | http://www.alice.cnptia.embrapa.br/alice/handle/doc/1115028 https://doi.org/10.1186/s40168-019-0727-1 |
Resumo: | Abstract: Background: Modern crop varieties are typically cultivated in agriculturally well-managed soils far from the centers oforigin of their wild relatives. How this habitat expansion impacted plant microbiome assembly is not well understood. Results: Here, we investigated if the transition from a native to an agricultural soil affected rhizobacterial communityassembly of wild and modern common bean (Phaseolus vulgaris) and if this led to a depletion of rhizobacterialdiversity. The impact of the bean genotype on rhizobacterial assembly was more prominent in the agriculturalsoil than in the native soil. Although only 113 operational taxonomic units (OTUs) out of a total of 15,925 wereshared by all eight bean accessions grown in native and agricultural soils, this core microbiome represented a largefraction (25.9%) of all sequence reads. More OTUs were exclusively found in the rhizosphere of common bean in theagricultural soil as compared to the native soil and in the rhizosphere of modern bean accessions as compared to wildaccessions. Co-occurrence analyses further showed a reduction in complexity of the interactions in the beanrhizosphere microbiome in the agricultural soil as compared to the native soil. |
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Deciphering rhizosphere microbiome assembly of wild and modern common bean (Phaseolus vulgaris) in native and agricultural soils from Colombia.Common beanWild and modern accessionsCore microbiomeNetworksFeijãoRizosferaPhaseolusMicrobiomedomesticationrhizosphereAbstract: Background: Modern crop varieties are typically cultivated in agriculturally well-managed soils far from the centers oforigin of their wild relatives. How this habitat expansion impacted plant microbiome assembly is not well understood. Results: Here, we investigated if the transition from a native to an agricultural soil affected rhizobacterial communityassembly of wild and modern common bean (Phaseolus vulgaris) and if this led to a depletion of rhizobacterialdiversity. The impact of the bean genotype on rhizobacterial assembly was more prominent in the agriculturalsoil than in the native soil. Although only 113 operational taxonomic units (OTUs) out of a total of 15,925 wereshared by all eight bean accessions grown in native and agricultural soils, this core microbiome represented a largefraction (25.9%) of all sequence reads. More OTUs were exclusively found in the rhizosphere of common bean in theagricultural soil as compared to the native soil and in the rhizosphere of modern bean accessions as compared to wildaccessions. Co-occurrence analyses further showed a reduction in complexity of the interactions in the beanrhizosphere microbiome in the agricultural soil as compared to the native soil.JUAN ESTEBAN PEREZ-JARAMILLO, Netherlands Institute of Ecology; MATTIAS DE HOLLANDER, Netherlands Institute of Ecology; CAMILO ANDRES RAMIREZ, University of Antioquia; RODRIGO MENDES, CNPMA; JOS M RAAIJMAKERS, Netherlands Institute of Ecology; VICTOR J CARRION, Leiden University.PEREZ-JARAMILLO, J. E.HOLLANDER, M. deRAMÍREZ, C. A.MENDES, R.RAAIJMAKERS, J. M.CARRIÓN, V. J.2019-11-25T18:19:47Z2019-11-25T18:19:47Z2019-11-2520192019-11-25T18:19:47Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleMicrobiome, v. 7, 2019. Article 114.http://www.alice.cnptia.embrapa.br/alice/handle/doc/1115028https://doi.org/10.1186/s40168-019-0727-1enginfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)instacron:EMBRAPA2019-11-25T18:19:53Zoai:www.alice.cnptia.embrapa.br:doc/1115028Repositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestopendoar:21542019-11-25T18:19:53falseRepositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestcg-riaa@embrapa.bropendoar:21542019-11-25T18:19:53Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa)false |
dc.title.none.fl_str_mv |
Deciphering rhizosphere microbiome assembly of wild and modern common bean (Phaseolus vulgaris) in native and agricultural soils from Colombia. |
title |
Deciphering rhizosphere microbiome assembly of wild and modern common bean (Phaseolus vulgaris) in native and agricultural soils from Colombia. |
spellingShingle |
Deciphering rhizosphere microbiome assembly of wild and modern common bean (Phaseolus vulgaris) in native and agricultural soils from Colombia. PEREZ-JARAMILLO, J. E. Common bean Wild and modern accessions Core microbiome Networks Feijão Rizosfera Phaseolus Microbiome domestication rhizosphere |
title_short |
Deciphering rhizosphere microbiome assembly of wild and modern common bean (Phaseolus vulgaris) in native and agricultural soils from Colombia. |
title_full |
Deciphering rhizosphere microbiome assembly of wild and modern common bean (Phaseolus vulgaris) in native and agricultural soils from Colombia. |
title_fullStr |
Deciphering rhizosphere microbiome assembly of wild and modern common bean (Phaseolus vulgaris) in native and agricultural soils from Colombia. |
title_full_unstemmed |
Deciphering rhizosphere microbiome assembly of wild and modern common bean (Phaseolus vulgaris) in native and agricultural soils from Colombia. |
title_sort |
Deciphering rhizosphere microbiome assembly of wild and modern common bean (Phaseolus vulgaris) in native and agricultural soils from Colombia. |
author |
PEREZ-JARAMILLO, J. E. |
author_facet |
PEREZ-JARAMILLO, J. E. HOLLANDER, M. de RAMÍREZ, C. A. MENDES, R. RAAIJMAKERS, J. M. CARRIÓN, V. J. |
author_role |
author |
author2 |
HOLLANDER, M. de RAMÍREZ, C. A. MENDES, R. RAAIJMAKERS, J. M. CARRIÓN, V. J. |
author2_role |
author author author author author |
dc.contributor.none.fl_str_mv |
JUAN ESTEBAN PEREZ-JARAMILLO, Netherlands Institute of Ecology; MATTIAS DE HOLLANDER, Netherlands Institute of Ecology; CAMILO ANDRES RAMIREZ, University of Antioquia; RODRIGO MENDES, CNPMA; JOS M RAAIJMAKERS, Netherlands Institute of Ecology; VICTOR J CARRION, Leiden University. |
dc.contributor.author.fl_str_mv |
PEREZ-JARAMILLO, J. E. HOLLANDER, M. de RAMÍREZ, C. A. MENDES, R. RAAIJMAKERS, J. M. CARRIÓN, V. J. |
dc.subject.por.fl_str_mv |
Common bean Wild and modern accessions Core microbiome Networks Feijão Rizosfera Phaseolus Microbiome domestication rhizosphere |
topic |
Common bean Wild and modern accessions Core microbiome Networks Feijão Rizosfera Phaseolus Microbiome domestication rhizosphere |
description |
Abstract: Background: Modern crop varieties are typically cultivated in agriculturally well-managed soils far from the centers oforigin of their wild relatives. How this habitat expansion impacted plant microbiome assembly is not well understood. Results: Here, we investigated if the transition from a native to an agricultural soil affected rhizobacterial communityassembly of wild and modern common bean (Phaseolus vulgaris) and if this led to a depletion of rhizobacterialdiversity. The impact of the bean genotype on rhizobacterial assembly was more prominent in the agriculturalsoil than in the native soil. Although only 113 operational taxonomic units (OTUs) out of a total of 15,925 wereshared by all eight bean accessions grown in native and agricultural soils, this core microbiome represented a largefraction (25.9%) of all sequence reads. More OTUs were exclusively found in the rhizosphere of common bean in theagricultural soil as compared to the native soil and in the rhizosphere of modern bean accessions as compared to wildaccessions. Co-occurrence analyses further showed a reduction in complexity of the interactions in the beanrhizosphere microbiome in the agricultural soil as compared to the native soil. |
publishDate |
2019 |
dc.date.none.fl_str_mv |
2019-11-25T18:19:47Z 2019-11-25T18:19:47Z 2019-11-25 2019 2019-11-25T18:19:47Z |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/publishedVersion info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
Microbiome, v. 7, 2019. Article 114. http://www.alice.cnptia.embrapa.br/alice/handle/doc/1115028 https://doi.org/10.1186/s40168-019-0727-1 |
identifier_str_mv |
Microbiome, v. 7, 2019. Article 114. |
url |
http://www.alice.cnptia.embrapa.br/alice/handle/doc/1115028 https://doi.org/10.1186/s40168-019-0727-1 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.source.none.fl_str_mv |
reponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa) instacron:EMBRAPA |
instname_str |
Empresa Brasileira de Pesquisa Agropecuária (Embrapa) |
instacron_str |
EMBRAPA |
institution |
EMBRAPA |
reponame_str |
Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) |
collection |
Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) |
repository.name.fl_str_mv |
Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa) |
repository.mail.fl_str_mv |
cg-riaa@embrapa.br |
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1794503484477800448 |