Isolation and characterization of the Arapaima gigas growth hormone (ag-GH) cDNA and three-dimensional modeling of this hormone in comparison with the human hormone (hGH).
Autor(a) principal: | |
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Data de Publicação: | 2023 |
Outros Autores: | , , , , , , , , , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) |
Texto Completo: | http://www.alice.cnptia.embrapa.br/alice/handle/doc/1150987 https://doi.org/10.3390/biom13010158 |
Resumo: | In a previous work, the common gonadotrophic hormone a-subunit (ag-GTHa), the ag-FSH b-; and ag-LH b-subunit cDNAs, were isolated and characterized by our research group from A. gigas pituitaries, while a preliminary synthesis of ag-FSH was also carried out in human embryonic kidney 293 (HEK293) cells. In the present work, the cDNA sequence encoding the ag-growth hormone (ag-GH) has also been isolated from the same giant Arapaimidae Amazonian fish. The ag-GH consists of 208 amino acids with a putative 23 amino acid signal peptide and a 185 amino acid mature peptide. The highest identity, based on the amino acid sequences, was found with the Elopiformes (82.0%), followed by Anguilliformes (79.7%) and Acipenseriformes (74.5%). The identity with the corresponding human GH (hGH) amino acid sequence is remarkable (44.8%), and the two disulfide bonds present in both sequences were perfectly conserved. Three-dimensional (3D) models of ag-GH, in comparison with hGH, were generated using the threading modeling method followed by molecular dynamics. Our simulations suggest that the two proteins have similar structural properties without major conformational changes under the simulated conditions, even though they are separated from each other by a >100 Myr evolutionary period (1 Myr = 1 million years). The sequence found will be used for the biotechnological synthesis of ag-GH while the ag-GH cDNA obtained will be utilized for preliminary Gene Therapy studies. |
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Isolation and characterization of the Arapaima gigas growth hormone (ag-GH) cDNA and three-dimensional modeling of this hormone in comparison with the human hormone (hGH).In silico sequencingGrowth hormonePeixePirarucuHormônio AnimalArapaima gigasMolecular modelsHormonesIn a previous work, the common gonadotrophic hormone a-subunit (ag-GTHa), the ag-FSH b-; and ag-LH b-subunit cDNAs, were isolated and characterized by our research group from A. gigas pituitaries, while a preliminary synthesis of ag-FSH was also carried out in human embryonic kidney 293 (HEK293) cells. In the present work, the cDNA sequence encoding the ag-growth hormone (ag-GH) has also been isolated from the same giant Arapaimidae Amazonian fish. The ag-GH consists of 208 amino acids with a putative 23 amino acid signal peptide and a 185 amino acid mature peptide. The highest identity, based on the amino acid sequences, was found with the Elopiformes (82.0%), followed by Anguilliformes (79.7%) and Acipenseriformes (74.5%). The identity with the corresponding human GH (hGH) amino acid sequence is remarkable (44.8%), and the two disulfide bonds present in both sequences were perfectly conserved. Three-dimensional (3D) models of ag-GH, in comparison with hGH, were generated using the threading modeling method followed by molecular dynamics. Our simulations suggest that the two proteins have similar structural properties without major conformational changes under the simulated conditions, even though they are separated from each other by a >100 Myr evolutionary period (1 Myr = 1 million years). The sequence found will be used for the biotechnological synthesis of ag-GH while the ag-GH cDNA obtained will be utilized for preliminary Gene Therapy studies.ELIANA ROSA LIMA, IPEN-CNEN; RENAN PASSOS FREIRE, IPEN-CNEN; MIRIAM FUSSAE SUZUKI, IPEN-CNEN; JOÃO EZEQUIEL OLIVEIRA, IPEN-CNEN; VANESSA LUNA YOSIDAKI, IPEN-CNEN; CIBELE NUNES PERONI, IPEN-CNEN; THAÍS SEVILHANO, IPEN-CNEN; MOISÉS ZORZETO, PISCICULTURA RAÇA, MT; LUCAS SIMON TORATI, CNPASA; CARLOS ROBERTO JORGE SOARES, IPEN-CNEN; IGOR DANIEL DE MIRANDA LIMA, UNIVERSIDADE FEDERAL DE MINAS GERAIS; THALES KRONENBERGER, Eberhard Karls University Tübingen, Germany; VINICIUS GONÇALVES MALTAROLLO, UNIVERSIDADE FEDERAL DE MINAS GERAIS; PAOLO BARTOLINI, IPEN-CNEN.LIMA, E. R.FREIRE, R. P.SUZUKI, M. F.OLIVEIRA, J. E.YOSIDAKI, V. L.PERONI, C. N.SEVILHANO, T.ZORZETO, M.TORATI, L. S.SOARES, C. R. J.LIMA, I. D. de M.KRONENBERGER, T.MALTAROLLO, V. G.BARTOLINI, P.2023-01-16T05:42:23Z2023-01-16T05:42:23Z2023-01-132023info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleBiomolecules, v. 13, n. 1, art. 158, 2023.2218-273Xhttp://www.alice.cnptia.embrapa.br/alice/handle/doc/1150987https://doi.org/10.3390/biom13010158enginfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)instacron:EMBRAPA2023-01-16T05:42:23Zoai:www.alice.cnptia.embrapa.br:doc/1150987Repositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestopendoar:21542023-01-16T05:42:23falseRepositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestcg-riaa@embrapa.bropendoar:21542023-01-16T05:42:23Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa)false |
dc.title.none.fl_str_mv |
Isolation and characterization of the Arapaima gigas growth hormone (ag-GH) cDNA and three-dimensional modeling of this hormone in comparison with the human hormone (hGH). |
title |
Isolation and characterization of the Arapaima gigas growth hormone (ag-GH) cDNA and three-dimensional modeling of this hormone in comparison with the human hormone (hGH). |
spellingShingle |
Isolation and characterization of the Arapaima gigas growth hormone (ag-GH) cDNA and three-dimensional modeling of this hormone in comparison with the human hormone (hGH). LIMA, E. R. In silico sequencing Growth hormone Peixe Pirarucu Hormônio Animal Arapaima gigas Molecular models Hormones |
title_short |
Isolation and characterization of the Arapaima gigas growth hormone (ag-GH) cDNA and three-dimensional modeling of this hormone in comparison with the human hormone (hGH). |
title_full |
Isolation and characterization of the Arapaima gigas growth hormone (ag-GH) cDNA and three-dimensional modeling of this hormone in comparison with the human hormone (hGH). |
title_fullStr |
Isolation and characterization of the Arapaima gigas growth hormone (ag-GH) cDNA and three-dimensional modeling of this hormone in comparison with the human hormone (hGH). |
title_full_unstemmed |
Isolation and characterization of the Arapaima gigas growth hormone (ag-GH) cDNA and three-dimensional modeling of this hormone in comparison with the human hormone (hGH). |
title_sort |
Isolation and characterization of the Arapaima gigas growth hormone (ag-GH) cDNA and three-dimensional modeling of this hormone in comparison with the human hormone (hGH). |
author |
LIMA, E. R. |
author_facet |
LIMA, E. R. FREIRE, R. P. SUZUKI, M. F. OLIVEIRA, J. E. YOSIDAKI, V. L. PERONI, C. N. SEVILHANO, T. ZORZETO, M. TORATI, L. S. SOARES, C. R. J. LIMA, I. D. de M. KRONENBERGER, T. MALTAROLLO, V. G. BARTOLINI, P. |
author_role |
author |
author2 |
FREIRE, R. P. SUZUKI, M. F. OLIVEIRA, J. E. YOSIDAKI, V. L. PERONI, C. N. SEVILHANO, T. ZORZETO, M. TORATI, L. S. SOARES, C. R. J. LIMA, I. D. de M. KRONENBERGER, T. MALTAROLLO, V. G. BARTOLINI, P. |
author2_role |
author author author author author author author author author author author author author |
dc.contributor.none.fl_str_mv |
ELIANA ROSA LIMA, IPEN-CNEN; RENAN PASSOS FREIRE, IPEN-CNEN; MIRIAM FUSSAE SUZUKI, IPEN-CNEN; JOÃO EZEQUIEL OLIVEIRA, IPEN-CNEN; VANESSA LUNA YOSIDAKI, IPEN-CNEN; CIBELE NUNES PERONI, IPEN-CNEN; THAÍS SEVILHANO, IPEN-CNEN; MOISÉS ZORZETO, PISCICULTURA RAÇA, MT; LUCAS SIMON TORATI, CNPASA; CARLOS ROBERTO JORGE SOARES, IPEN-CNEN; IGOR DANIEL DE MIRANDA LIMA, UNIVERSIDADE FEDERAL DE MINAS GERAIS; THALES KRONENBERGER, Eberhard Karls University Tübingen, Germany; VINICIUS GONÇALVES MALTAROLLO, UNIVERSIDADE FEDERAL DE MINAS GERAIS; PAOLO BARTOLINI, IPEN-CNEN. |
dc.contributor.author.fl_str_mv |
LIMA, E. R. FREIRE, R. P. SUZUKI, M. F. OLIVEIRA, J. E. YOSIDAKI, V. L. PERONI, C. N. SEVILHANO, T. ZORZETO, M. TORATI, L. S. SOARES, C. R. J. LIMA, I. D. de M. KRONENBERGER, T. MALTAROLLO, V. G. BARTOLINI, P. |
dc.subject.por.fl_str_mv |
In silico sequencing Growth hormone Peixe Pirarucu Hormônio Animal Arapaima gigas Molecular models Hormones |
topic |
In silico sequencing Growth hormone Peixe Pirarucu Hormônio Animal Arapaima gigas Molecular models Hormones |
description |
In a previous work, the common gonadotrophic hormone a-subunit (ag-GTHa), the ag-FSH b-; and ag-LH b-subunit cDNAs, were isolated and characterized by our research group from A. gigas pituitaries, while a preliminary synthesis of ag-FSH was also carried out in human embryonic kidney 293 (HEK293) cells. In the present work, the cDNA sequence encoding the ag-growth hormone (ag-GH) has also been isolated from the same giant Arapaimidae Amazonian fish. The ag-GH consists of 208 amino acids with a putative 23 amino acid signal peptide and a 185 amino acid mature peptide. The highest identity, based on the amino acid sequences, was found with the Elopiformes (82.0%), followed by Anguilliformes (79.7%) and Acipenseriformes (74.5%). The identity with the corresponding human GH (hGH) amino acid sequence is remarkable (44.8%), and the two disulfide bonds present in both sequences were perfectly conserved. Three-dimensional (3D) models of ag-GH, in comparison with hGH, were generated using the threading modeling method followed by molecular dynamics. Our simulations suggest that the two proteins have similar structural properties without major conformational changes under the simulated conditions, even though they are separated from each other by a >100 Myr evolutionary period (1 Myr = 1 million years). The sequence found will be used for the biotechnological synthesis of ag-GH while the ag-GH cDNA obtained will be utilized for preliminary Gene Therapy studies. |
publishDate |
2023 |
dc.date.none.fl_str_mv |
2023-01-16T05:42:23Z 2023-01-16T05:42:23Z 2023-01-13 2023 |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/publishedVersion info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
Biomolecules, v. 13, n. 1, art. 158, 2023. 2218-273X http://www.alice.cnptia.embrapa.br/alice/handle/doc/1150987 https://doi.org/10.3390/biom13010158 |
identifier_str_mv |
Biomolecules, v. 13, n. 1, art. 158, 2023. 2218-273X |
url |
http://www.alice.cnptia.embrapa.br/alice/handle/doc/1150987 https://doi.org/10.3390/biom13010158 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.source.none.fl_str_mv |
reponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa) instacron:EMBRAPA |
instname_str |
Empresa Brasileira de Pesquisa Agropecuária (Embrapa) |
instacron_str |
EMBRAPA |
institution |
EMBRAPA |
reponame_str |
Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) |
collection |
Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) |
repository.name.fl_str_mv |
Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa) |
repository.mail.fl_str_mv |
cg-riaa@embrapa.br |
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1794503537557766144 |