An overview of Phoneutria nigriventer spider venom using combined transcriptomic and proteomic approaches.

Detalhes bibliográficos
Autor(a) principal: DINIZ, M. R. V.
Data de Publicação: 2018
Outros Autores: PAIVA, A. L. B., GUERRA-DUARTE, C., NISHIYAMA JÚNIOR, M. Y., MUDADU, M. de A., OLIVEIRA, U. de, BORGES, M. H., YATES, J. R., JUNQUEIRA-DE-AZEVEDO, I. de
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
Texto Completo: http://www.alice.cnptia.embrapa.br/alice/handle/doc/1102272
https://doi.org/10.1371/journal. pone.0200628
Resumo: Abstract. Phoneutria nigriventer is one of the largest existing true spiders and one of the few considered medically relevant. Its venom contains several neurotoxic peptides that act on different ion channels and chemical receptors of vertebrates and invertebrates. Some of these venom toxins have been shown as promising models for pharmaceutical or biotechnological use. However, the large diversity and the predominance of low molecular weight toxins in this venom have hampered the identification and deep investigation of the less abundant toxins and the proteins with high molecular weight. Here, we combined conventional and next-generation cDNA sequencing with Multidimensional Protein Identification Technology (MudPIT), to obtain an in-depth panorama of the composition of P. nigriventer spider venom. The results from these three approaches showed that cysteine-rich peptide toxins are the most abundant components in this venom and most of them contain the Inhibitor Cysteine Knot (ICK) structural motif. Ninety-eight sequences corresponding to cysteine-rich peptide toxins were identified by the three methodologies and many of them were considered as putative novel toxins, due to the low similarity to previously described toxins. Furthermore, using next-generation sequencing we identified families of several other classes of toxins, including CAPs (Cysteine Rich Secretory ProteinÐCRiSP, antigen 5 and Pathogenesis-Related 1ÐPR-1), serine proteinases, TCTPs (translationally controlled tumor proteins), proteinase inhibitors, metalloproteinases and hyaluronidases, which have been poorly described for this venom. This study provides an overview of the molecular diversity of P. nigriventer venom, revealing several novel components and providing a better basis to understand its toxicity and pharmacological activities.
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spelling An overview of Phoneutria nigriventer spider venom using combined transcriptomic and proteomic approaches.ProteômicaTranscriptomaPhoneutria nigriventerProteomicsTranscriptomicsAbstract. Phoneutria nigriventer is one of the largest existing true spiders and one of the few considered medically relevant. Its venom contains several neurotoxic peptides that act on different ion channels and chemical receptors of vertebrates and invertebrates. Some of these venom toxins have been shown as promising models for pharmaceutical or biotechnological use. However, the large diversity and the predominance of low molecular weight toxins in this venom have hampered the identification and deep investigation of the less abundant toxins and the proteins with high molecular weight. Here, we combined conventional and next-generation cDNA sequencing with Multidimensional Protein Identification Technology (MudPIT), to obtain an in-depth panorama of the composition of P. nigriventer spider venom. The results from these three approaches showed that cysteine-rich peptide toxins are the most abundant components in this venom and most of them contain the Inhibitor Cysteine Knot (ICK) structural motif. Ninety-eight sequences corresponding to cysteine-rich peptide toxins were identified by the three methodologies and many of them were considered as putative novel toxins, due to the low similarity to previously described toxins. Furthermore, using next-generation sequencing we identified families of several other classes of toxins, including CAPs (Cysteine Rich Secretory ProteinÐCRiSP, antigen 5 and Pathogenesis-Related 1ÐPR-1), serine proteinases, TCTPs (translationally controlled tumor proteins), proteinase inhibitors, metalloproteinases and hyaluronidases, which have been poorly described for this venom. This study provides an overview of the molecular diversity of P. nigriventer venom, revealing several novel components and providing a better basis to understand its toxicity and pharmacological activities.Artigo e0200628. Na publicação: Mauricio A. Mudadu.MARCELO R. V. DINIZ, Fundação Ezequiel Dias, Belo Horizonte; ANA L. B. PAIVA, Fundação Ezequiel Dias, Belo Horizonte; CLARA GUERRA-DUARTE, Fundação Ezequiel Dias, Belo Horizonte; MILTON Y. NISHIYAMA JÚNIOR, Instituto Butantan, São Paulo; MAURICIO DE ALVARENGA MUDADU, CNPTIA; URSULA DE OLIVEIRA, Instituto Butantan, São Paulo; MÁRCIA H. BORGES, Fundação Ezequiel Dias, Belo Horizonte; JOHN R. YATES, The Scripps Research Institute; INÁCIO DE L. JUNQUEIRA-DE-AZEVEDO, Instituto Butantan, São Paulo.DINIZ, M. R. V.PAIVA, A. L. B.GUERRA-DUARTE, C.NISHIYAMA JÚNIOR, M. Y.MUDADU, M. de A.OLIVEIRA, U. deBORGES, M. H.YATES, J. R.JUNQUEIRA-DE-AZEVEDO, I. de2018-12-23T23:30:29Z2018-12-23T23:30:29Z2018-12-2020182018-12-23T23:30:29Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articlePlos One, v. 13, n. 8, p. 1-29, 2018.http://www.alice.cnptia.embrapa.br/alice/handle/doc/1102272https://doi.org/10.1371/journal. pone.0200628enginfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)instacron:EMBRAPA2018-12-23T23:30:35Zoai:www.alice.cnptia.embrapa.br:doc/1102272Repositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestopendoar:21542018-12-23T23:30:35falseRepositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestcg-riaa@embrapa.bropendoar:21542018-12-23T23:30:35Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa)false
dc.title.none.fl_str_mv An overview of Phoneutria nigriventer spider venom using combined transcriptomic and proteomic approaches.
title An overview of Phoneutria nigriventer spider venom using combined transcriptomic and proteomic approaches.
spellingShingle An overview of Phoneutria nigriventer spider venom using combined transcriptomic and proteomic approaches.
DINIZ, M. R. V.
Proteômica
Transcriptoma
Phoneutria nigriventer
Proteomics
Transcriptomics
title_short An overview of Phoneutria nigriventer spider venom using combined transcriptomic and proteomic approaches.
title_full An overview of Phoneutria nigriventer spider venom using combined transcriptomic and proteomic approaches.
title_fullStr An overview of Phoneutria nigriventer spider venom using combined transcriptomic and proteomic approaches.
title_full_unstemmed An overview of Phoneutria nigriventer spider venom using combined transcriptomic and proteomic approaches.
title_sort An overview of Phoneutria nigriventer spider venom using combined transcriptomic and proteomic approaches.
author DINIZ, M. R. V.
author_facet DINIZ, M. R. V.
PAIVA, A. L. B.
GUERRA-DUARTE, C.
NISHIYAMA JÚNIOR, M. Y.
MUDADU, M. de A.
OLIVEIRA, U. de
BORGES, M. H.
YATES, J. R.
JUNQUEIRA-DE-AZEVEDO, I. de
author_role author
author2 PAIVA, A. L. B.
GUERRA-DUARTE, C.
NISHIYAMA JÚNIOR, M. Y.
MUDADU, M. de A.
OLIVEIRA, U. de
BORGES, M. H.
YATES, J. R.
JUNQUEIRA-DE-AZEVEDO, I. de
author2_role author
author
author
author
author
author
author
author
dc.contributor.none.fl_str_mv MARCELO R. V. DINIZ, Fundação Ezequiel Dias, Belo Horizonte; ANA L. B. PAIVA, Fundação Ezequiel Dias, Belo Horizonte; CLARA GUERRA-DUARTE, Fundação Ezequiel Dias, Belo Horizonte; MILTON Y. NISHIYAMA JÚNIOR, Instituto Butantan, São Paulo; MAURICIO DE ALVARENGA MUDADU, CNPTIA; URSULA DE OLIVEIRA, Instituto Butantan, São Paulo; MÁRCIA H. BORGES, Fundação Ezequiel Dias, Belo Horizonte; JOHN R. YATES, The Scripps Research Institute; INÁCIO DE L. JUNQUEIRA-DE-AZEVEDO, Instituto Butantan, São Paulo.
dc.contributor.author.fl_str_mv DINIZ, M. R. V.
PAIVA, A. L. B.
GUERRA-DUARTE, C.
NISHIYAMA JÚNIOR, M. Y.
MUDADU, M. de A.
OLIVEIRA, U. de
BORGES, M. H.
YATES, J. R.
JUNQUEIRA-DE-AZEVEDO, I. de
dc.subject.por.fl_str_mv Proteômica
Transcriptoma
Phoneutria nigriventer
Proteomics
Transcriptomics
topic Proteômica
Transcriptoma
Phoneutria nigriventer
Proteomics
Transcriptomics
description Abstract. Phoneutria nigriventer is one of the largest existing true spiders and one of the few considered medically relevant. Its venom contains several neurotoxic peptides that act on different ion channels and chemical receptors of vertebrates and invertebrates. Some of these venom toxins have been shown as promising models for pharmaceutical or biotechnological use. However, the large diversity and the predominance of low molecular weight toxins in this venom have hampered the identification and deep investigation of the less abundant toxins and the proteins with high molecular weight. Here, we combined conventional and next-generation cDNA sequencing with Multidimensional Protein Identification Technology (MudPIT), to obtain an in-depth panorama of the composition of P. nigriventer spider venom. The results from these three approaches showed that cysteine-rich peptide toxins are the most abundant components in this venom and most of them contain the Inhibitor Cysteine Knot (ICK) structural motif. Ninety-eight sequences corresponding to cysteine-rich peptide toxins were identified by the three methodologies and many of them were considered as putative novel toxins, due to the low similarity to previously described toxins. Furthermore, using next-generation sequencing we identified families of several other classes of toxins, including CAPs (Cysteine Rich Secretory ProteinÐCRiSP, antigen 5 and Pathogenesis-Related 1ÐPR-1), serine proteinases, TCTPs (translationally controlled tumor proteins), proteinase inhibitors, metalloproteinases and hyaluronidases, which have been poorly described for this venom. This study provides an overview of the molecular diversity of P. nigriventer venom, revealing several novel components and providing a better basis to understand its toxicity and pharmacological activities.
publishDate 2018
dc.date.none.fl_str_mv 2018-12-23T23:30:29Z
2018-12-23T23:30:29Z
2018-12-20
2018
2018-12-23T23:30:29Z
dc.type.driver.fl_str_mv info:eu-repo/semantics/publishedVersion
info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv Plos One, v. 13, n. 8, p. 1-29, 2018.
http://www.alice.cnptia.embrapa.br/alice/handle/doc/1102272
https://doi.org/10.1371/journal. pone.0200628
identifier_str_mv Plos One, v. 13, n. 8, p. 1-29, 2018.
url http://www.alice.cnptia.embrapa.br/alice/handle/doc/1102272
https://doi.org/10.1371/journal. pone.0200628
dc.language.iso.fl_str_mv eng
language eng
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.source.none.fl_str_mv reponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
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instname_str Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
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institution EMBRAPA
reponame_str Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
collection Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
repository.name.fl_str_mv Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
repository.mail.fl_str_mv cg-riaa@embrapa.br
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