A Mad7 system for genetic engineering of filamentous fungi.

Detalhes bibliográficos
Autor(a) principal: VANEGAS K. G.
Data de Publicação: 2023
Outros Autores: RENDSVIG, J. K. H., JARCZYSKA, Z. D., CÔRTES, M. V. de C. B., VAN ESCH, A. P., MORERA-GÓMEZ, M., CONTESINI, F. J., MORTENSEN, U. H.
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
Texto Completo: http://www.alice.cnptia.embrapa.br/alice/handle/doc/1151460
https://doi.org/10.3390/jof9010016
Resumo: The introduction of CRISPR technologies has revolutionized strain engineering in filamentous fungi. However, its use in commercial applications has been hampered by concerns over intellectual property (IP) ownership, and there is a need for implementing Cas nucleases that are not limited by complex IP constraints. One promising candidate in this context is the Mad7 enzyme, and we here present a versatile Mad7-CRISPR vector-set that can be efficiently used for the genetic engineering of four different Aspergillus species: Aspergillus nidulans, A. niger, A. oryzae and A. campestris, the latter being a species that has never previously been genetically engineered. We successfully used Mad7 to introduce unspecific as well as specific template-directed mutations including gene disruptions, gene insertions and gene deletions. Moreover, we demonstrate that both single-stranded oligonucleotides and PCR fragments equipped with short and long targeting sequences can be used for efficient marker-free gene editing. Importantly, our CRISPR/Mad7 system was functional in both non-homologous end-joining (NHEJ) proficient and deficient strains. Therefore, the newly implemented CRISPR/Mad7 was efficient to promote gene deletions and integrations using different types of DNA repair in four different Aspergillus species, resulting in the expansion of CRISPR toolboxes in fungal cell factories.
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spelling A Mad7 system for genetic engineering of filamentous fungi.Filamentous fungiCRISPRMad7Fungal strain engineeringFungoAspergillusGenetic engineeringFungiThe introduction of CRISPR technologies has revolutionized strain engineering in filamentous fungi. However, its use in commercial applications has been hampered by concerns over intellectual property (IP) ownership, and there is a need for implementing Cas nucleases that are not limited by complex IP constraints. One promising candidate in this context is the Mad7 enzyme, and we here present a versatile Mad7-CRISPR vector-set that can be efficiently used for the genetic engineering of four different Aspergillus species: Aspergillus nidulans, A. niger, A. oryzae and A. campestris, the latter being a species that has never previously been genetically engineered. We successfully used Mad7 to introduce unspecific as well as specific template-directed mutations including gene disruptions, gene insertions and gene deletions. Moreover, we demonstrate that both single-stranded oligonucleotides and PCR fragments equipped with short and long targeting sequences can be used for efficient marker-free gene editing. Importantly, our CRISPR/Mad7 system was functional in both non-homologous end-joining (NHEJ) proficient and deficient strains. Therefore, the newly implemented CRISPR/Mad7 was efficient to promote gene deletions and integrations using different types of DNA repair in four different Aspergillus species, resulting in the expansion of CRISPR toolboxes in fungal cell factories.KATHERINA GARCIA VANEGAS, UNIVERSITY OF DENAMARK; JAKOB KRÆMMER HAAR RENDSVIG, UNIVERSITY OF DENMARK; ZOFIA DOROTA JARCZYNSKA, UNIVERSITY OF DENMARK; MARCIO VINICIUS DE C BARROS CORTES, CNPAF; ABEL PETER VAN ESCH, UNIVERSITY OF DENAMARK; MARTÍ MORERA-GÓMEZ, UNIVERSITY OF DENAMARK; FABIANO JARES CONTESINI, UNIVERSITY OF DENAMARK; UFFE HASBRO MORTENSEN, UNIVERSITY OF DENAMARK.VANEGAS K. G.RENDSVIG, J. K. H.JARCZYSKA, Z. D.CÔRTES, M. V. de C. B.VAN ESCH, A. P.MORERA-GÓMEZ, M.CONTESINI, F. J.MORTENSEN, U. H.2023-02-02T16:01:20Z2023-02-02T16:01:20Z2023-02-022023info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleJournal of Fungi, v. 9, n. 1, 16, 2023.2309-608Xhttp://www.alice.cnptia.embrapa.br/alice/handle/doc/1151460https://doi.org/10.3390/jof9010016enginfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)instacron:EMBRAPA2023-02-02T16:01:20Zoai:www.alice.cnptia.embrapa.br:doc/1151460Repositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestopendoar:21542023-02-02T16:01:20falseRepositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestcg-riaa@embrapa.bropendoar:21542023-02-02T16:01:20Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa)false
dc.title.none.fl_str_mv A Mad7 system for genetic engineering of filamentous fungi.
title A Mad7 system for genetic engineering of filamentous fungi.
spellingShingle A Mad7 system for genetic engineering of filamentous fungi.
VANEGAS K. G.
Filamentous fungi
CRISPR
Mad7
Fungal strain engineering
Fungo
Aspergillus
Genetic engineering
Fungi
title_short A Mad7 system for genetic engineering of filamentous fungi.
title_full A Mad7 system for genetic engineering of filamentous fungi.
title_fullStr A Mad7 system for genetic engineering of filamentous fungi.
title_full_unstemmed A Mad7 system for genetic engineering of filamentous fungi.
title_sort A Mad7 system for genetic engineering of filamentous fungi.
author VANEGAS K. G.
author_facet VANEGAS K. G.
RENDSVIG, J. K. H.
JARCZYSKA, Z. D.
CÔRTES, M. V. de C. B.
VAN ESCH, A. P.
MORERA-GÓMEZ, M.
CONTESINI, F. J.
MORTENSEN, U. H.
author_role author
author2 RENDSVIG, J. K. H.
JARCZYSKA, Z. D.
CÔRTES, M. V. de C. B.
VAN ESCH, A. P.
MORERA-GÓMEZ, M.
CONTESINI, F. J.
MORTENSEN, U. H.
author2_role author
author
author
author
author
author
author
dc.contributor.none.fl_str_mv KATHERINA GARCIA VANEGAS, UNIVERSITY OF DENAMARK; JAKOB KRÆMMER HAAR RENDSVIG, UNIVERSITY OF DENMARK; ZOFIA DOROTA JARCZYNSKA, UNIVERSITY OF DENMARK; MARCIO VINICIUS DE C BARROS CORTES, CNPAF; ABEL PETER VAN ESCH, UNIVERSITY OF DENAMARK; MARTÍ MORERA-GÓMEZ, UNIVERSITY OF DENAMARK; FABIANO JARES CONTESINI, UNIVERSITY OF DENAMARK; UFFE HASBRO MORTENSEN, UNIVERSITY OF DENAMARK.
dc.contributor.author.fl_str_mv VANEGAS K. G.
RENDSVIG, J. K. H.
JARCZYSKA, Z. D.
CÔRTES, M. V. de C. B.
VAN ESCH, A. P.
MORERA-GÓMEZ, M.
CONTESINI, F. J.
MORTENSEN, U. H.
dc.subject.por.fl_str_mv Filamentous fungi
CRISPR
Mad7
Fungal strain engineering
Fungo
Aspergillus
Genetic engineering
Fungi
topic Filamentous fungi
CRISPR
Mad7
Fungal strain engineering
Fungo
Aspergillus
Genetic engineering
Fungi
description The introduction of CRISPR technologies has revolutionized strain engineering in filamentous fungi. However, its use in commercial applications has been hampered by concerns over intellectual property (IP) ownership, and there is a need for implementing Cas nucleases that are not limited by complex IP constraints. One promising candidate in this context is the Mad7 enzyme, and we here present a versatile Mad7-CRISPR vector-set that can be efficiently used for the genetic engineering of four different Aspergillus species: Aspergillus nidulans, A. niger, A. oryzae and A. campestris, the latter being a species that has never previously been genetically engineered. We successfully used Mad7 to introduce unspecific as well as specific template-directed mutations including gene disruptions, gene insertions and gene deletions. Moreover, we demonstrate that both single-stranded oligonucleotides and PCR fragments equipped with short and long targeting sequences can be used for efficient marker-free gene editing. Importantly, our CRISPR/Mad7 system was functional in both non-homologous end-joining (NHEJ) proficient and deficient strains. Therefore, the newly implemented CRISPR/Mad7 was efficient to promote gene deletions and integrations using different types of DNA repair in four different Aspergillus species, resulting in the expansion of CRISPR toolboxes in fungal cell factories.
publishDate 2023
dc.date.none.fl_str_mv 2023-02-02T16:01:20Z
2023-02-02T16:01:20Z
2023-02-02
2023
dc.type.driver.fl_str_mv info:eu-repo/semantics/publishedVersion
info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv Journal of Fungi, v. 9, n. 1, 16, 2023.
2309-608X
http://www.alice.cnptia.embrapa.br/alice/handle/doc/1151460
https://doi.org/10.3390/jof9010016
identifier_str_mv Journal of Fungi, v. 9, n. 1, 16, 2023.
2309-608X
url http://www.alice.cnptia.embrapa.br/alice/handle/doc/1151460
https://doi.org/10.3390/jof9010016
dc.language.iso.fl_str_mv eng
language eng
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.source.none.fl_str_mv reponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
instacron:EMBRAPA
instname_str Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
instacron_str EMBRAPA
institution EMBRAPA
reponame_str Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
collection Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
repository.name.fl_str_mv Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
repository.mail.fl_str_mv cg-riaa@embrapa.br
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