Strategies to optimize modeling habitat suitability of Bertholletia excelsa in the Pan-Amazonia.

Detalhes bibliográficos
Autor(a) principal: TOURNE, D. C. M.
Data de Publicação: 2019
Outros Autores: BALLESTER, M. V. R., JAMES, P. M. A., MARTORANO, L. G., GUEDES, M. C., THOMAS, E.
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
Texto Completo: http://www.alice.cnptia.embrapa.br/alice/handle/doc/1114461
https://doi.org/10.1002/ece3.5726
Resumo: Aim: Amazon-nut (Bertholletia excelsa) is a hyperdominant and protected tree species, playing a keystone role in nutrient cycling and ecosystem service provision in Amazonia. Our main goal was to develop a robust habitat suitability model of Amazon-nut and to identify the most important predictor variables to support conservation and tree planting decisions. Localization: Amazon region, South America. Methods: We collected 3,325 unique Amazon-nut records and assembled >100 spatial predictor variables organized across climatic, edaphic, and geophysical categories. We compared suitability models using variables (a) selected through statistical techniques; (b) recommended by experts; and (c) integrating both approaches (a and b). We applied different spatial filtering scenarios to reduce overfitting. We additionally fine-tuned MAXENT settings to our data. The best model was selected through quantitative and qualitative assessments. Results: Principal component analysis based on expert recommendations was the most appropriate method for predictor selection. Elevation, coarse soil fragments, clay, slope, and annual potential evapotranspiration were the most important predictors. Their relative contribution to the best model amounted to 75%. Filtering of the presences within a radius of 10 km displayed lowest overfitting, a satisfactory omission rate and the most symmetric distribution curve. Our findings suggest that under current environmental conditions, suitable habitat for Amazon-nut is found across 2.3 million km2, that is, 32% of the Amazon Biome. Main conclusion: The combination of statistical techniques with expert knowledge improved the quality of our suitability model. Topographic and soil variables were the most important predictors. The combination of predictor variable selection, fine-tuning of model parameters and spatial filtering was critical for the construction of a reliable habitat suitability model.
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spelling Strategies to optimize modeling habitat suitability of Bertholletia excelsa in the Pan-Amazonia.Expert knowledgeMaximum entropyModel evaluationProtected Amazonian speciesSpatial filteringSpecies distribution modelConhecimento especializadoEntropia máximaAvaliação de modeloAnálise de componentes principaisFiltragem espacialModelo de distribuição de espécieCastanhaPrincipal component analysisAim: Amazon-nut (Bertholletia excelsa) is a hyperdominant and protected tree species, playing a keystone role in nutrient cycling and ecosystem service provision in Amazonia. Our main goal was to develop a robust habitat suitability model of Amazon-nut and to identify the most important predictor variables to support conservation and tree planting decisions. Localization: Amazon region, South America. Methods: We collected 3,325 unique Amazon-nut records and assembled >100 spatial predictor variables organized across climatic, edaphic, and geophysical categories. We compared suitability models using variables (a) selected through statistical techniques; (b) recommended by experts; and (c) integrating both approaches (a and b). We applied different spatial filtering scenarios to reduce overfitting. We additionally fine-tuned MAXENT settings to our data. The best model was selected through quantitative and qualitative assessments. Results: Principal component analysis based on expert recommendations was the most appropriate method for predictor selection. Elevation, coarse soil fragments, clay, slope, and annual potential evapotranspiration were the most important predictors. Their relative contribution to the best model amounted to 75%. Filtering of the presences within a radius of 10 km displayed lowest overfitting, a satisfactory omission rate and the most symmetric distribution curve. Our findings suggest that under current environmental conditions, suitable habitat for Amazon-nut is found across 2.3 million km2, that is, 32% of the Amazon Biome. Main conclusion: The combination of statistical techniques with expert knowledge improved the quality of our suitability model. Topographic and soil variables were the most important predictors. The combination of predictor variable selection, fine-tuning of model parameters and spatial filtering was critical for the construction of a reliable habitat suitability model.DAIANA C. M. TOURNE, USP; MARIA V. R. BALLESTER, USP; PATRICK M. A. JAMES, UNIVERSITY OF MONTRÉAL; LUCIETA GUERREIRO MARTORANO, CPATU; MARCELINO CARNEIRO GUEDES, CPAF-AP; EVERT THOMAS, BIOVERSITY INTERNATIONAL, REGIONAL OFFICE FOR THE AMERICAS.TOURNE, D. C. M.BALLESTER, M. V. R.JAMES, P. M. A.MARTORANO, L. G.GUEDES, M. C.THOMAS, E.2019-11-18T18:07:57Z2019-11-18T18:07:57Z2019-11-1820192019-11-18T18:07:57Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleEcology and Evolution, p. 1-16, Oct. 2019.http://www.alice.cnptia.embrapa.br/alice/handle/doc/1114461https://doi.org/10.1002/ece3.5726enginfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)instacron:EMBRAPA2019-11-18T18:08:05Zoai:www.alice.cnptia.embrapa.br:doc/1114461Repositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestopendoar:21542019-11-18T18:08:05falseRepositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestcg-riaa@embrapa.bropendoar:21542019-11-18T18:08:05Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa)false
dc.title.none.fl_str_mv Strategies to optimize modeling habitat suitability of Bertholletia excelsa in the Pan-Amazonia.
title Strategies to optimize modeling habitat suitability of Bertholletia excelsa in the Pan-Amazonia.
spellingShingle Strategies to optimize modeling habitat suitability of Bertholletia excelsa in the Pan-Amazonia.
TOURNE, D. C. M.
Expert knowledge
Maximum entropy
Model evaluation
Protected Amazonian species
Spatial filtering
Species distribution model
Conhecimento especializado
Entropia máxima
Avaliação de modelo
Análise de componentes principais
Filtragem espacial
Modelo de distribuição de espécie
Castanha
Principal component analysis
title_short Strategies to optimize modeling habitat suitability of Bertholletia excelsa in the Pan-Amazonia.
title_full Strategies to optimize modeling habitat suitability of Bertholletia excelsa in the Pan-Amazonia.
title_fullStr Strategies to optimize modeling habitat suitability of Bertholletia excelsa in the Pan-Amazonia.
title_full_unstemmed Strategies to optimize modeling habitat suitability of Bertholletia excelsa in the Pan-Amazonia.
title_sort Strategies to optimize modeling habitat suitability of Bertholletia excelsa in the Pan-Amazonia.
author TOURNE, D. C. M.
author_facet TOURNE, D. C. M.
BALLESTER, M. V. R.
JAMES, P. M. A.
MARTORANO, L. G.
GUEDES, M. C.
THOMAS, E.
author_role author
author2 BALLESTER, M. V. R.
JAMES, P. M. A.
MARTORANO, L. G.
GUEDES, M. C.
THOMAS, E.
author2_role author
author
author
author
author
dc.contributor.none.fl_str_mv DAIANA C. M. TOURNE, USP; MARIA V. R. BALLESTER, USP; PATRICK M. A. JAMES, UNIVERSITY OF MONTRÉAL; LUCIETA GUERREIRO MARTORANO, CPATU; MARCELINO CARNEIRO GUEDES, CPAF-AP; EVERT THOMAS, BIOVERSITY INTERNATIONAL, REGIONAL OFFICE FOR THE AMERICAS.
dc.contributor.author.fl_str_mv TOURNE, D. C. M.
BALLESTER, M. V. R.
JAMES, P. M. A.
MARTORANO, L. G.
GUEDES, M. C.
THOMAS, E.
dc.subject.por.fl_str_mv Expert knowledge
Maximum entropy
Model evaluation
Protected Amazonian species
Spatial filtering
Species distribution model
Conhecimento especializado
Entropia máxima
Avaliação de modelo
Análise de componentes principais
Filtragem espacial
Modelo de distribuição de espécie
Castanha
Principal component analysis
topic Expert knowledge
Maximum entropy
Model evaluation
Protected Amazonian species
Spatial filtering
Species distribution model
Conhecimento especializado
Entropia máxima
Avaliação de modelo
Análise de componentes principais
Filtragem espacial
Modelo de distribuição de espécie
Castanha
Principal component analysis
description Aim: Amazon-nut (Bertholletia excelsa) is a hyperdominant and protected tree species, playing a keystone role in nutrient cycling and ecosystem service provision in Amazonia. Our main goal was to develop a robust habitat suitability model of Amazon-nut and to identify the most important predictor variables to support conservation and tree planting decisions. Localization: Amazon region, South America. Methods: We collected 3,325 unique Amazon-nut records and assembled >100 spatial predictor variables organized across climatic, edaphic, and geophysical categories. We compared suitability models using variables (a) selected through statistical techniques; (b) recommended by experts; and (c) integrating both approaches (a and b). We applied different spatial filtering scenarios to reduce overfitting. We additionally fine-tuned MAXENT settings to our data. The best model was selected through quantitative and qualitative assessments. Results: Principal component analysis based on expert recommendations was the most appropriate method for predictor selection. Elevation, coarse soil fragments, clay, slope, and annual potential evapotranspiration were the most important predictors. Their relative contribution to the best model amounted to 75%. Filtering of the presences within a radius of 10 km displayed lowest overfitting, a satisfactory omission rate and the most symmetric distribution curve. Our findings suggest that under current environmental conditions, suitable habitat for Amazon-nut is found across 2.3 million km2, that is, 32% of the Amazon Biome. Main conclusion: The combination of statistical techniques with expert knowledge improved the quality of our suitability model. Topographic and soil variables were the most important predictors. The combination of predictor variable selection, fine-tuning of model parameters and spatial filtering was critical for the construction of a reliable habitat suitability model.
publishDate 2019
dc.date.none.fl_str_mv 2019-11-18T18:07:57Z
2019-11-18T18:07:57Z
2019-11-18
2019
2019-11-18T18:07:57Z
dc.type.driver.fl_str_mv info:eu-repo/semantics/publishedVersion
info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv Ecology and Evolution, p. 1-16, Oct. 2019.
http://www.alice.cnptia.embrapa.br/alice/handle/doc/1114461
https://doi.org/10.1002/ece3.5726
identifier_str_mv Ecology and Evolution, p. 1-16, Oct. 2019.
url http://www.alice.cnptia.embrapa.br/alice/handle/doc/1114461
https://doi.org/10.1002/ece3.5726
dc.language.iso.fl_str_mv eng
language eng
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.source.none.fl_str_mv reponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
instacron:EMBRAPA
instname_str Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
instacron_str EMBRAPA
institution EMBRAPA
reponame_str Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
collection Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
repository.name.fl_str_mv Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
repository.mail.fl_str_mv cg-riaa@embrapa.br
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