Genetic variability analysis of Byrsonima crassifolia germplasm collected in Pará State using ISSR markers.

Detalhes bibliográficos
Autor(a) principal: RODRIGUES, S. M.
Data de Publicação: 2016
Outros Autores: MOURA, E. F., RAMOS, G. K. S., OLIVEIRA, M. S. P.
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
Texto Completo: http://www.alice.cnptia.embrapa.br/alice/handle/doc/1057399
Resumo: Native of the Amazon, the nanche (Byrsonima crassifolia) is a fruit cultivated by family farmers and used in cooking; as such, it represents an opportunity for regional agribusiness. The Embrapa Eastern Amazon set up an active germplasm bank (BAG) consisting of 22 accessions sampled in 11 municipalities of Pará State. Due to its economic potential, there is an interest to advance the genetic breeding program of this species. The aim of this study was to characterize the BAG nanche collection using inter-simple sequence repeat (ISSR) markers. Accessions were genotyped using 23 pre-selected ISSR primers resulting in 109 amplified polymorphic and 51 monomorphic bands. With eight polymorphic bands each, the most polymorphic primers were UBC 809 and UBC 848. An unweighted pair-group method with arithmetic average cluster analysis based on Jaccard?s coefficient indicated that the individuals clustered into two distinct groups. Accessions Igarapé Açu-2 and Augusto Corrêa-Pl 1 were most similar. The genetic dissimilarity values ranged from 0.10 to 0.59. We conclude that the ISSR markers were efficient in detecting polymorphisms in the nanche accessions, and that it is possible to infer the genetic variability among accessions of the collection. This demonstrate the importance of using molecular markers in poorly studied species and the advantages that this information can bring to the genetic improvement of such species.
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spelling Genetic variability analysis of Byrsonima crassifolia germplasm collected in Pará State using ISSR markers.Marcador MolecularMuriciMalpighiaceaeNative of the Amazon, the nanche (Byrsonima crassifolia) is a fruit cultivated by family farmers and used in cooking; as such, it represents an opportunity for regional agribusiness. The Embrapa Eastern Amazon set up an active germplasm bank (BAG) consisting of 22 accessions sampled in 11 municipalities of Pará State. Due to its economic potential, there is an interest to advance the genetic breeding program of this species. The aim of this study was to characterize the BAG nanche collection using inter-simple sequence repeat (ISSR) markers. Accessions were genotyped using 23 pre-selected ISSR primers resulting in 109 amplified polymorphic and 51 monomorphic bands. With eight polymorphic bands each, the most polymorphic primers were UBC 809 and UBC 848. An unweighted pair-group method with arithmetic average cluster analysis based on Jaccard?s coefficient indicated that the individuals clustered into two distinct groups. Accessions Igarapé Açu-2 and Augusto Corrêa-Pl 1 were most similar. The genetic dissimilarity values ranged from 0.10 to 0.59. We conclude that the ISSR markers were efficient in detecting polymorphisms in the nanche accessions, and that it is possible to infer the genetic variability among accessions of the collection. This demonstrate the importance of using molecular markers in poorly studied species and the advantages that this information can bring to the genetic improvement of such species.SIMONE DE MIRANDA RODRIGUES, CPATU; ELISA FERREIRA MOURA CUNHA, CPATU; G. K. S. Ramos, UFRA; MARIA DO SOCORRO P DE OLIVEIRA, CPATU.RODRIGUES, S. M.MOURA, E. F.RAMOS, G. K. S.OLIVEIRA, M. S. P.2016-11-29T11:11:11Z2016-11-29T11:11:11Z2016-11-2920162016-11-29T11:11:11Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleGenetics and Molecular Research, v. 15, n. 4, article gmr15048887, 2016.http://www.alice.cnptia.embrapa.br/alice/handle/doc/105739910.4238/gmr15048887enginfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)instacron:EMBRAPA2017-08-16T03:52:54Zoai:www.alice.cnptia.embrapa.br:doc/1057399Repositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestopendoar:21542017-08-16T03:52:54falseRepositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestcg-riaa@embrapa.bropendoar:21542017-08-16T03:52:54Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa)false
dc.title.none.fl_str_mv Genetic variability analysis of Byrsonima crassifolia germplasm collected in Pará State using ISSR markers.
title Genetic variability analysis of Byrsonima crassifolia germplasm collected in Pará State using ISSR markers.
spellingShingle Genetic variability analysis of Byrsonima crassifolia germplasm collected in Pará State using ISSR markers.
RODRIGUES, S. M.
Marcador Molecular
Murici
Malpighiaceae
title_short Genetic variability analysis of Byrsonima crassifolia germplasm collected in Pará State using ISSR markers.
title_full Genetic variability analysis of Byrsonima crassifolia germplasm collected in Pará State using ISSR markers.
title_fullStr Genetic variability analysis of Byrsonima crassifolia germplasm collected in Pará State using ISSR markers.
title_full_unstemmed Genetic variability analysis of Byrsonima crassifolia germplasm collected in Pará State using ISSR markers.
title_sort Genetic variability analysis of Byrsonima crassifolia germplasm collected in Pará State using ISSR markers.
author RODRIGUES, S. M.
author_facet RODRIGUES, S. M.
MOURA, E. F.
RAMOS, G. K. S.
OLIVEIRA, M. S. P.
author_role author
author2 MOURA, E. F.
RAMOS, G. K. S.
OLIVEIRA, M. S. P.
author2_role author
author
author
dc.contributor.none.fl_str_mv SIMONE DE MIRANDA RODRIGUES, CPATU; ELISA FERREIRA MOURA CUNHA, CPATU; G. K. S. Ramos, UFRA; MARIA DO SOCORRO P DE OLIVEIRA, CPATU.
dc.contributor.author.fl_str_mv RODRIGUES, S. M.
MOURA, E. F.
RAMOS, G. K. S.
OLIVEIRA, M. S. P.
dc.subject.por.fl_str_mv Marcador Molecular
Murici
Malpighiaceae
topic Marcador Molecular
Murici
Malpighiaceae
description Native of the Amazon, the nanche (Byrsonima crassifolia) is a fruit cultivated by family farmers and used in cooking; as such, it represents an opportunity for regional agribusiness. The Embrapa Eastern Amazon set up an active germplasm bank (BAG) consisting of 22 accessions sampled in 11 municipalities of Pará State. Due to its economic potential, there is an interest to advance the genetic breeding program of this species. The aim of this study was to characterize the BAG nanche collection using inter-simple sequence repeat (ISSR) markers. Accessions were genotyped using 23 pre-selected ISSR primers resulting in 109 amplified polymorphic and 51 monomorphic bands. With eight polymorphic bands each, the most polymorphic primers were UBC 809 and UBC 848. An unweighted pair-group method with arithmetic average cluster analysis based on Jaccard?s coefficient indicated that the individuals clustered into two distinct groups. Accessions Igarapé Açu-2 and Augusto Corrêa-Pl 1 were most similar. The genetic dissimilarity values ranged from 0.10 to 0.59. We conclude that the ISSR markers were efficient in detecting polymorphisms in the nanche accessions, and that it is possible to infer the genetic variability among accessions of the collection. This demonstrate the importance of using molecular markers in poorly studied species and the advantages that this information can bring to the genetic improvement of such species.
publishDate 2016
dc.date.none.fl_str_mv 2016-11-29T11:11:11Z
2016-11-29T11:11:11Z
2016-11-29
2016
2016-11-29T11:11:11Z
dc.type.driver.fl_str_mv info:eu-repo/semantics/publishedVersion
info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv Genetics and Molecular Research, v. 15, n. 4, article gmr15048887, 2016.
http://www.alice.cnptia.embrapa.br/alice/handle/doc/1057399
10.4238/gmr15048887
identifier_str_mv Genetics and Molecular Research, v. 15, n. 4, article gmr15048887, 2016.
10.4238/gmr15048887
url http://www.alice.cnptia.embrapa.br/alice/handle/doc/1057399
dc.language.iso.fl_str_mv eng
language eng
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dc.source.none.fl_str_mv reponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
instacron:EMBRAPA
instname_str Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
instacron_str EMBRAPA
institution EMBRAPA
reponame_str Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
collection Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
repository.name.fl_str_mv Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
repository.mail.fl_str_mv cg-riaa@embrapa.br
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