Muscle transcriptome analysis reveals genes and metabolic pathways related to mineral concentration in Bos indicus.

Detalhes bibliográficos
Autor(a) principal: AFONSO, J.
Data de Publicação: 2019
Outros Autores: COUTINHO, L. L., TIZIOTO, P. C., DINIZ, W. J. da S., LIMA, A. O. de, ROCHA, M. I. P., BUSS, C, E., ANDRADE, B. G. N. A., PIAYA. O., SILVA, J. V., LINS, L. A., GROMBONI, C. F., NOGUEIRA, A. R. de A., FORTES, M. R. S., MOURÃO, G. B., REGITANO, L. C. de A.
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
Texto Completo: http://www.alice.cnptia.embrapa.br/alice/handle/doc/1115486
https://doi.org/10.1038/s41598-019-49089-x
Resumo: Mineral content affects the biological processes underlying beef quality. Muscle mineral concentration depends not only on intake-outtake balance and muscle type, but also on age, environment, breed, and genetic factors. To unveil the genetic factors involved in muscle mineral concentration, we applied a pairwise diferential gene expression analysis in groups of Nelore steers genetically divergent for nine diferent mineral concentrations. Here, based on signifcant expression diferences between contrasting groups, we presented candidate genes for the genetic regulation of mineral concentration in muscle. Functional enrichment and protein-protein interaction network analyses were carried out to search for gene regulatory processes concerning each mineral. The core genetic regulation for all minerals studied, except Zn, seems to rest on interactions between components of the extracellular matrix. Regulation of adipogenesis-related pathways was also signifcant in our results. Antagonistic patterns of gene expression for fatty acid metabolism-related genes may explain the Cu and Zn antagonistic efect on fatty acid accumulation. Our results shed light on the role of these minerals on cell function
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spelling Muscle transcriptome analysis reveals genes and metabolic pathways related to mineral concentration in Bos indicus.Muscle typeMineral concentrationsNeloreQualidade da carneGado NeloreGado de CorteMelhoramento Genético AnimalBeef qualityBeef cattleAnimal breedingMineral content affects the biological processes underlying beef quality. Muscle mineral concentration depends not only on intake-outtake balance and muscle type, but also on age, environment, breed, and genetic factors. To unveil the genetic factors involved in muscle mineral concentration, we applied a pairwise diferential gene expression analysis in groups of Nelore steers genetically divergent for nine diferent mineral concentrations. Here, based on signifcant expression diferences between contrasting groups, we presented candidate genes for the genetic regulation of mineral concentration in muscle. Functional enrichment and protein-protein interaction network analyses were carried out to search for gene regulatory processes concerning each mineral. The core genetic regulation for all minerals studied, except Zn, seems to rest on interactions between components of the extracellular matrix. Regulation of adipogenesis-related pathways was also signifcant in our results. Antagonistic patterns of gene expression for fatty acid metabolism-related genes may explain the Cu and Zn antagonistic efect on fatty acid accumulation. Our results shed light on the role of these minerals on cell functionJuliana Afonso, UFSCAR; Luiz Lehmann Coutinho, USP; Polyana Cristine Tizioto; Wellison Jarles da Silva Diniz, UFSCAR; Andressa Oliveira de Lima; Marina Ibelli Pereira Rocha, UFSCAR; Carlos Eduardo Buss, UFSCAR; Bruno Gabriel nascimento Andrade; Otávio Piaya, UFSCAR; Juliana Virginio da Silva, USP; Laura Albuquerque Lins, USP; Caio Fernando Gromboni, Instituto Federal de Educação, Ciência e Tecnologia da Bahia; ANA RITA DE ARAUJO NOGUEIRA, CPPSE; Marina Rufino Salinas Fortes, University of Queensland; Gerson Barreto Mourão, USP; LUCIANA CORREIA DE ALMEIDA REGITANO, CPPSE.AFONSO, J.COUTINHO, L. L.TIZIOTO, P. C.DINIZ, W. J. da S.LIMA, A. O. deROCHA, M. I. P.BUSS, C, E.ANDRADE, B. G. N. A.PIAYA. O.SILVA, J. V.LINS, L. A.GROMBONI, C. F.NOGUEIRA, A. R. de A.FORTES, M. R. S.MOURÃO, G. B.REGITANO, L. C. de A.2019-11-29T18:08:06Z2019-11-29T18:08:06Z2019-11-2920192020-01-10T11:11:11Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleScientific Reports, v. 9, n. 12715, 2019.http://www.alice.cnptia.embrapa.br/alice/handle/doc/1115486https://doi.org/10.1038/s41598-019-49089-xenginfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)instacron:EMBRAPA2019-11-29T18:08:13Zoai:www.alice.cnptia.embrapa.br:doc/1115486Repositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestopendoar:21542019-11-29T18:08:13falseRepositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestcg-riaa@embrapa.bropendoar:21542019-11-29T18:08:13Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa)false
dc.title.none.fl_str_mv Muscle transcriptome analysis reveals genes and metabolic pathways related to mineral concentration in Bos indicus.
title Muscle transcriptome analysis reveals genes and metabolic pathways related to mineral concentration in Bos indicus.
spellingShingle Muscle transcriptome analysis reveals genes and metabolic pathways related to mineral concentration in Bos indicus.
AFONSO, J.
Muscle type
Mineral concentrations
Nelore
Qualidade da carne
Gado Nelore
Gado de Corte
Melhoramento Genético Animal
Beef quality
Beef cattle
Animal breeding
title_short Muscle transcriptome analysis reveals genes and metabolic pathways related to mineral concentration in Bos indicus.
title_full Muscle transcriptome analysis reveals genes and metabolic pathways related to mineral concentration in Bos indicus.
title_fullStr Muscle transcriptome analysis reveals genes and metabolic pathways related to mineral concentration in Bos indicus.
title_full_unstemmed Muscle transcriptome analysis reveals genes and metabolic pathways related to mineral concentration in Bos indicus.
title_sort Muscle transcriptome analysis reveals genes and metabolic pathways related to mineral concentration in Bos indicus.
author AFONSO, J.
author_facet AFONSO, J.
COUTINHO, L. L.
TIZIOTO, P. C.
DINIZ, W. J. da S.
LIMA, A. O. de
ROCHA, M. I. P.
BUSS, C, E.
ANDRADE, B. G. N. A.
PIAYA. O.
SILVA, J. V.
LINS, L. A.
GROMBONI, C. F.
NOGUEIRA, A. R. de A.
FORTES, M. R. S.
MOURÃO, G. B.
REGITANO, L. C. de A.
author_role author
author2 COUTINHO, L. L.
TIZIOTO, P. C.
DINIZ, W. J. da S.
LIMA, A. O. de
ROCHA, M. I. P.
BUSS, C, E.
ANDRADE, B. G. N. A.
PIAYA. O.
SILVA, J. V.
LINS, L. A.
GROMBONI, C. F.
NOGUEIRA, A. R. de A.
FORTES, M. R. S.
MOURÃO, G. B.
REGITANO, L. C. de A.
author2_role author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
dc.contributor.none.fl_str_mv Juliana Afonso, UFSCAR; Luiz Lehmann Coutinho, USP; Polyana Cristine Tizioto; Wellison Jarles da Silva Diniz, UFSCAR; Andressa Oliveira de Lima; Marina Ibelli Pereira Rocha, UFSCAR; Carlos Eduardo Buss, UFSCAR; Bruno Gabriel nascimento Andrade; Otávio Piaya, UFSCAR; Juliana Virginio da Silva, USP; Laura Albuquerque Lins, USP; Caio Fernando Gromboni, Instituto Federal de Educação, Ciência e Tecnologia da Bahia; ANA RITA DE ARAUJO NOGUEIRA, CPPSE; Marina Rufino Salinas Fortes, University of Queensland; Gerson Barreto Mourão, USP; LUCIANA CORREIA DE ALMEIDA REGITANO, CPPSE.
dc.contributor.author.fl_str_mv AFONSO, J.
COUTINHO, L. L.
TIZIOTO, P. C.
DINIZ, W. J. da S.
LIMA, A. O. de
ROCHA, M. I. P.
BUSS, C, E.
ANDRADE, B. G. N. A.
PIAYA. O.
SILVA, J. V.
LINS, L. A.
GROMBONI, C. F.
NOGUEIRA, A. R. de A.
FORTES, M. R. S.
MOURÃO, G. B.
REGITANO, L. C. de A.
dc.subject.por.fl_str_mv Muscle type
Mineral concentrations
Nelore
Qualidade da carne
Gado Nelore
Gado de Corte
Melhoramento Genético Animal
Beef quality
Beef cattle
Animal breeding
topic Muscle type
Mineral concentrations
Nelore
Qualidade da carne
Gado Nelore
Gado de Corte
Melhoramento Genético Animal
Beef quality
Beef cattle
Animal breeding
description Mineral content affects the biological processes underlying beef quality. Muscle mineral concentration depends not only on intake-outtake balance and muscle type, but also on age, environment, breed, and genetic factors. To unveil the genetic factors involved in muscle mineral concentration, we applied a pairwise diferential gene expression analysis in groups of Nelore steers genetically divergent for nine diferent mineral concentrations. Here, based on signifcant expression diferences between contrasting groups, we presented candidate genes for the genetic regulation of mineral concentration in muscle. Functional enrichment and protein-protein interaction network analyses were carried out to search for gene regulatory processes concerning each mineral. The core genetic regulation for all minerals studied, except Zn, seems to rest on interactions between components of the extracellular matrix. Regulation of adipogenesis-related pathways was also signifcant in our results. Antagonistic patterns of gene expression for fatty acid metabolism-related genes may explain the Cu and Zn antagonistic efect on fatty acid accumulation. Our results shed light on the role of these minerals on cell function
publishDate 2019
dc.date.none.fl_str_mv 2019-11-29T18:08:06Z
2019-11-29T18:08:06Z
2019-11-29
2019
2020-01-10T11:11:11Z
dc.type.driver.fl_str_mv info:eu-repo/semantics/publishedVersion
info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv Scientific Reports, v. 9, n. 12715, 2019.
http://www.alice.cnptia.embrapa.br/alice/handle/doc/1115486
https://doi.org/10.1038/s41598-019-49089-x
identifier_str_mv Scientific Reports, v. 9, n. 12715, 2019.
url http://www.alice.cnptia.embrapa.br/alice/handle/doc/1115486
https://doi.org/10.1038/s41598-019-49089-x
dc.language.iso.fl_str_mv eng
language eng
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.source.none.fl_str_mv reponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
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instname_str Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
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institution EMBRAPA
reponame_str Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
collection Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
repository.name.fl_str_mv Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
repository.mail.fl_str_mv cg-riaa@embrapa.br
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