Detection of Mycobacterium bovis in Bovine and Bubaline Tissues Using Nested-PCR for TbD1.

Detalhes bibliográficos
Autor(a) principal: ARAUJO, C. P.
Data de Publicação: 2014
Outros Autores: OSÓRIO, A. L. A. R., JORGE, K. S. G., RAMOS, C. A. N., S. FILHO, A. F., VIDAL, C. E. S., ROXO, E., NISHIBE, c., ALMEIDA, N. F., F. JUNIOR, A. A., SILVA, M. R., B. NETO, J. D., CERQUEIRA, V. D., ZUMÁRRAGA, M., ARAUJO, F. R.
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
Texto Completo: http://www.alice.cnptia.embrapa.br/alice/handle/doc/1010358
Resumo: In the present study, a nested-PCR system, targeting the TbD1 region, involving the performance of conventional PCR followed by real-time PCR, was developed to detect Mycobacterium bovis in bovine/bubaline tissue homogenates. The sensitivity and specificity of the reactions were assessed with DNA samples extracted from tuberculous and non-tuberculous mycobacteria, as well as other actinomycetales species and DNA samples extracted directly from bovine and bubaline tissue homogenates. In terms of analytical sensitivity, the DNA of M. bovis AN5 was detected up to 1.56 ng with conventional PCR, 97.6 pg with real-time PCR, and 1.53 pg with nested-PCR in the reaction mixture. The nested-PCR exhibited 100% analytical specificity for M. bovis when tested with the DNA of reference strains of environmental mycobacteria and closely-related Actinomycetales. A clinical sensitivity value of 76.0% was detected with tissue samples from animals that exhibited positive results in the comparative intradermal tuberculin test (CITT), as well as from those with lesions compatible with tuberculosis (LCT) that rendered positive cultures. A clinical specificity value of 100% was detected with tissue samples from animals with CITT- results, with no visible lesions (NVL) and negative cultures. No significant differences were found between the nested-PCR and culture in terms of detecting CITT+ animals with LCT or with NVL. No significant differences were recorded in the detection of CITT- animals with NVL. However, nested-PCR detected a significantly higher number of positive animals than the culture in the group of animals exhibiting LCT with no previous records of CITT. The use of the nested-PCR assay to detect M. bovis in tissue homogenates provided a rapid diagnosis of bovine and bubaline tuberculosis.
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spelling Detection of Mycobacterium bovis in Bovine and Bubaline Tissues Using Nested-PCR for TbD1.Nested-PCR systemBovine and bubaline tuberculosisMycobacterium abscessusIn the present study, a nested-PCR system, targeting the TbD1 region, involving the performance of conventional PCR followed by real-time PCR, was developed to detect Mycobacterium bovis in bovine/bubaline tissue homogenates. The sensitivity and specificity of the reactions were assessed with DNA samples extracted from tuberculous and non-tuberculous mycobacteria, as well as other actinomycetales species and DNA samples extracted directly from bovine and bubaline tissue homogenates. In terms of analytical sensitivity, the DNA of M. bovis AN5 was detected up to 1.56 ng with conventional PCR, 97.6 pg with real-time PCR, and 1.53 pg with nested-PCR in the reaction mixture. The nested-PCR exhibited 100% analytical specificity for M. bovis when tested with the DNA of reference strains of environmental mycobacteria and closely-related Actinomycetales. A clinical sensitivity value of 76.0% was detected with tissue samples from animals that exhibited positive results in the comparative intradermal tuberculin test (CITT), as well as from those with lesions compatible with tuberculosis (LCT) that rendered positive cultures. A clinical specificity value of 100% was detected with tissue samples from animals with CITT- results, with no visible lesions (NVL) and negative cultures. No significant differences were found between the nested-PCR and culture in terms of detecting CITT+ animals with LCT or with NVL. No significant differences were recorded in the detection of CITT- animals with NVL. However, nested-PCR detected a significantly higher number of positive animals than the culture in the group of animals exhibiting LCT with no previous records of CITT. The use of the nested-PCR assay to detect M. bovis in tissue homogenates provided a rapid diagnosis of bovine and bubaline tuberculosis.MARCIO ROBERTO SILVA, CNPGL.ARAUJO, C. P.OSÓRIO, A. L. A. R.JORGE, K. S. G.RAMOS, C. A. N.S. FILHO, A. F.VIDAL, C. E. S.ROXO, E.NISHIBE, c.ALMEIDA, N. F.F. JUNIOR, A. A.SILVA, M. R.B. NETO, J. D.CERQUEIRA, V. D.ZUMÁRRAGA, M.ARAUJO, F. R.2015-03-10T01:49:33Z2015-03-10T01:49:33Z2015-03-0220142015-03-10T01:49:33Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articlePlos One, v. 9, n. 3, p. 1-6, 2014http://www.alice.cnptia.embrapa.br/alice/handle/doc/1010358enginfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)instacron:EMBRAPA2017-08-16T02:06:26Zoai:www.alice.cnptia.embrapa.br:doc/1010358Repositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestopendoar:21542017-08-16T02:06:26falseRepositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestcg-riaa@embrapa.bropendoar:21542017-08-16T02:06:26Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa)false
dc.title.none.fl_str_mv Detection of Mycobacterium bovis in Bovine and Bubaline Tissues Using Nested-PCR for TbD1.
title Detection of Mycobacterium bovis in Bovine and Bubaline Tissues Using Nested-PCR for TbD1.
spellingShingle Detection of Mycobacterium bovis in Bovine and Bubaline Tissues Using Nested-PCR for TbD1.
ARAUJO, C. P.
Nested-PCR system
Bovine and bubaline tuberculosis
Mycobacterium abscessus
title_short Detection of Mycobacterium bovis in Bovine and Bubaline Tissues Using Nested-PCR for TbD1.
title_full Detection of Mycobacterium bovis in Bovine and Bubaline Tissues Using Nested-PCR for TbD1.
title_fullStr Detection of Mycobacterium bovis in Bovine and Bubaline Tissues Using Nested-PCR for TbD1.
title_full_unstemmed Detection of Mycobacterium bovis in Bovine and Bubaline Tissues Using Nested-PCR for TbD1.
title_sort Detection of Mycobacterium bovis in Bovine and Bubaline Tissues Using Nested-PCR for TbD1.
author ARAUJO, C. P.
author_facet ARAUJO, C. P.
OSÓRIO, A. L. A. R.
JORGE, K. S. G.
RAMOS, C. A. N.
S. FILHO, A. F.
VIDAL, C. E. S.
ROXO, E.
NISHIBE, c.
ALMEIDA, N. F.
F. JUNIOR, A. A.
SILVA, M. R.
B. NETO, J. D.
CERQUEIRA, V. D.
ZUMÁRRAGA, M.
ARAUJO, F. R.
author_role author
author2 OSÓRIO, A. L. A. R.
JORGE, K. S. G.
RAMOS, C. A. N.
S. FILHO, A. F.
VIDAL, C. E. S.
ROXO, E.
NISHIBE, c.
ALMEIDA, N. F.
F. JUNIOR, A. A.
SILVA, M. R.
B. NETO, J. D.
CERQUEIRA, V. D.
ZUMÁRRAGA, M.
ARAUJO, F. R.
author2_role author
author
author
author
author
author
author
author
author
author
author
author
author
author
dc.contributor.none.fl_str_mv MARCIO ROBERTO SILVA, CNPGL.
dc.contributor.author.fl_str_mv ARAUJO, C. P.
OSÓRIO, A. L. A. R.
JORGE, K. S. G.
RAMOS, C. A. N.
S. FILHO, A. F.
VIDAL, C. E. S.
ROXO, E.
NISHIBE, c.
ALMEIDA, N. F.
F. JUNIOR, A. A.
SILVA, M. R.
B. NETO, J. D.
CERQUEIRA, V. D.
ZUMÁRRAGA, M.
ARAUJO, F. R.
dc.subject.por.fl_str_mv Nested-PCR system
Bovine and bubaline tuberculosis
Mycobacterium abscessus
topic Nested-PCR system
Bovine and bubaline tuberculosis
Mycobacterium abscessus
description In the present study, a nested-PCR system, targeting the TbD1 region, involving the performance of conventional PCR followed by real-time PCR, was developed to detect Mycobacterium bovis in bovine/bubaline tissue homogenates. The sensitivity and specificity of the reactions were assessed with DNA samples extracted from tuberculous and non-tuberculous mycobacteria, as well as other actinomycetales species and DNA samples extracted directly from bovine and bubaline tissue homogenates. In terms of analytical sensitivity, the DNA of M. bovis AN5 was detected up to 1.56 ng with conventional PCR, 97.6 pg with real-time PCR, and 1.53 pg with nested-PCR in the reaction mixture. The nested-PCR exhibited 100% analytical specificity for M. bovis when tested with the DNA of reference strains of environmental mycobacteria and closely-related Actinomycetales. A clinical sensitivity value of 76.0% was detected with tissue samples from animals that exhibited positive results in the comparative intradermal tuberculin test (CITT), as well as from those with lesions compatible with tuberculosis (LCT) that rendered positive cultures. A clinical specificity value of 100% was detected with tissue samples from animals with CITT- results, with no visible lesions (NVL) and negative cultures. No significant differences were found between the nested-PCR and culture in terms of detecting CITT+ animals with LCT or with NVL. No significant differences were recorded in the detection of CITT- animals with NVL. However, nested-PCR detected a significantly higher number of positive animals than the culture in the group of animals exhibiting LCT with no previous records of CITT. The use of the nested-PCR assay to detect M. bovis in tissue homogenates provided a rapid diagnosis of bovine and bubaline tuberculosis.
publishDate 2014
dc.date.none.fl_str_mv 2014
2015-03-10T01:49:33Z
2015-03-10T01:49:33Z
2015-03-02
2015-03-10T01:49:33Z
dc.type.driver.fl_str_mv info:eu-repo/semantics/publishedVersion
info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv Plos One, v. 9, n. 3, p. 1-6, 2014
http://www.alice.cnptia.embrapa.br/alice/handle/doc/1010358
identifier_str_mv Plos One, v. 9, n. 3, p. 1-6, 2014
url http://www.alice.cnptia.embrapa.br/alice/handle/doc/1010358
dc.language.iso.fl_str_mv eng
language eng
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.source.none.fl_str_mv reponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
instacron:EMBRAPA
instname_str Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
instacron_str EMBRAPA
institution EMBRAPA
reponame_str Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
collection Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
repository.name.fl_str_mv Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
repository.mail.fl_str_mv cg-riaa@embrapa.br
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