Genetic variability and population structure of Salvia lachnostachys: implications for breeding and conservation programs.

Detalhes bibliográficos
Autor(a) principal: ERBANO, M.
Data de Publicação: 2015
Outros Autores: SCHUHLI, G. S. e, SANTOS, É. P. dos
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
Texto Completo: http://www.alice.cnptia.embrapa.br/alice/handle/doc/1013073
Resumo: The genetic diversity and population structure of Salvia lachnostachys Benth were assessed. Inter Simple Sequence Repeat (ISSR) molecular markers were used to investigate the restricted distribution of S. lachnostachys in Parana State, Brazil. Leaves of 73 individuals representing three populations were collected. DNA was extracted and submitted to PCR-ISSR amplification with nine tested primers. Genetic diversity parameters were evaluated. Our analysis indicated 95.6% polymorphic loci (stress value 0.02) with a 0.79 average Simpson?s index. The Nei-Li distance dendrogram and principal component analysis largely recovered the geographical origin of each sample. Four major clusters were recognized representing each collected population. Nei?s gene diversity and Shannon?s information index were 0.25 and 0.40 respectively. As is typical for outcrossing herbs, the majority of genetic variation occurred at the population level (81.76%). A high gene flow (Nm = 2.48) was observed with a correspondingly low fixation index. These values were generally similar to previous studies on congeneric species. The results of principal coordinate analysis (PCA) and of arithmetic average (UPGMA) were consistent and all three populations appear distinct as in STRUCTURE analysis. In addition, this analysis indicated a majority intrapopulation genetic variation. Despite the human pressure on natural populations our study found high levels of genetic diversity for S. lachnostachys. This was the first molecular assessment for this endemic species with medicinal proprieties and the results can guide for subsequent bioprospection, breeding programs or conservation actions.
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spelling Genetic variability and population structure of Salvia lachnostachys: implications for breeding and conservation programs.Salvia lachnostachysVariabilidade genéticaEstrutura populacionalMelhoramento genéticoIntraspecific diversityISSRLabiataeConservaçãoThe genetic diversity and population structure of Salvia lachnostachys Benth were assessed. Inter Simple Sequence Repeat (ISSR) molecular markers were used to investigate the restricted distribution of S. lachnostachys in Parana State, Brazil. Leaves of 73 individuals representing three populations were collected. DNA was extracted and submitted to PCR-ISSR amplification with nine tested primers. Genetic diversity parameters were evaluated. Our analysis indicated 95.6% polymorphic loci (stress value 0.02) with a 0.79 average Simpson?s index. The Nei-Li distance dendrogram and principal component analysis largely recovered the geographical origin of each sample. Four major clusters were recognized representing each collected population. Nei?s gene diversity and Shannon?s information index were 0.25 and 0.40 respectively. As is typical for outcrossing herbs, the majority of genetic variation occurred at the population level (81.76%). A high gene flow (Nm = 2.48) was observed with a correspondingly low fixation index. These values were generally similar to previous studies on congeneric species. The results of principal coordinate analysis (PCA) and of arithmetic average (UPGMA) were consistent and all three populations appear distinct as in STRUCTURE analysis. In addition, this analysis indicated a majority intrapopulation genetic variation. Despite the human pressure on natural populations our study found high levels of genetic diversity for S. lachnostachys. This was the first molecular assessment for this endemic species with medicinal proprieties and the results can guide for subsequent bioprospection, breeding programs or conservation actions.Marianna Erbano, Pós-graduanda da UFPR; GUILHERME SCHNELL E SCHUHLI, CNPF; Élide Pereira dos Santos, UFPR.ERBANO, M.SCHUHLI, G. S. eSANTOS, É. P. dos2015-04-09T11:11:11Z2015-04-09T11:11:11Z2015-04-0920152015-04-09T11:11:11Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleInternational Journal of Molecular Sciences, v. 16, p. 7839-7850, 2015.http://www.alice.cnptia.embrapa.br/alice/handle/doc/101307310.3390/ijms16047839enginfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)instacron:EMBRAPA2017-08-16T02:12:41Zoai:www.alice.cnptia.embrapa.br:doc/1013073Repositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestopendoar:21542017-08-16T02:12:41falseRepositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestcg-riaa@embrapa.bropendoar:21542017-08-16T02:12:41Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa)false
dc.title.none.fl_str_mv Genetic variability and population structure of Salvia lachnostachys: implications for breeding and conservation programs.
title Genetic variability and population structure of Salvia lachnostachys: implications for breeding and conservation programs.
spellingShingle Genetic variability and population structure of Salvia lachnostachys: implications for breeding and conservation programs.
ERBANO, M.
Salvia lachnostachys
Variabilidade genética
Estrutura populacional
Melhoramento genético
Intraspecific diversity
ISSR
Labiatae
Conservação
title_short Genetic variability and population structure of Salvia lachnostachys: implications for breeding and conservation programs.
title_full Genetic variability and population structure of Salvia lachnostachys: implications for breeding and conservation programs.
title_fullStr Genetic variability and population structure of Salvia lachnostachys: implications for breeding and conservation programs.
title_full_unstemmed Genetic variability and population structure of Salvia lachnostachys: implications for breeding and conservation programs.
title_sort Genetic variability and population structure of Salvia lachnostachys: implications for breeding and conservation programs.
author ERBANO, M.
author_facet ERBANO, M.
SCHUHLI, G. S. e
SANTOS, É. P. dos
author_role author
author2 SCHUHLI, G. S. e
SANTOS, É. P. dos
author2_role author
author
dc.contributor.none.fl_str_mv Marianna Erbano, Pós-graduanda da UFPR; GUILHERME SCHNELL E SCHUHLI, CNPF; Élide Pereira dos Santos, UFPR.
dc.contributor.author.fl_str_mv ERBANO, M.
SCHUHLI, G. S. e
SANTOS, É. P. dos
dc.subject.por.fl_str_mv Salvia lachnostachys
Variabilidade genética
Estrutura populacional
Melhoramento genético
Intraspecific diversity
ISSR
Labiatae
Conservação
topic Salvia lachnostachys
Variabilidade genética
Estrutura populacional
Melhoramento genético
Intraspecific diversity
ISSR
Labiatae
Conservação
description The genetic diversity and population structure of Salvia lachnostachys Benth were assessed. Inter Simple Sequence Repeat (ISSR) molecular markers were used to investigate the restricted distribution of S. lachnostachys in Parana State, Brazil. Leaves of 73 individuals representing three populations were collected. DNA was extracted and submitted to PCR-ISSR amplification with nine tested primers. Genetic diversity parameters were evaluated. Our analysis indicated 95.6% polymorphic loci (stress value 0.02) with a 0.79 average Simpson?s index. The Nei-Li distance dendrogram and principal component analysis largely recovered the geographical origin of each sample. Four major clusters were recognized representing each collected population. Nei?s gene diversity and Shannon?s information index were 0.25 and 0.40 respectively. As is typical for outcrossing herbs, the majority of genetic variation occurred at the population level (81.76%). A high gene flow (Nm = 2.48) was observed with a correspondingly low fixation index. These values were generally similar to previous studies on congeneric species. The results of principal coordinate analysis (PCA) and of arithmetic average (UPGMA) were consistent and all three populations appear distinct as in STRUCTURE analysis. In addition, this analysis indicated a majority intrapopulation genetic variation. Despite the human pressure on natural populations our study found high levels of genetic diversity for S. lachnostachys. This was the first molecular assessment for this endemic species with medicinal proprieties and the results can guide for subsequent bioprospection, breeding programs or conservation actions.
publishDate 2015
dc.date.none.fl_str_mv 2015-04-09T11:11:11Z
2015-04-09T11:11:11Z
2015-04-09
2015
2015-04-09T11:11:11Z
dc.type.driver.fl_str_mv info:eu-repo/semantics/publishedVersion
info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv International Journal of Molecular Sciences, v. 16, p. 7839-7850, 2015.
http://www.alice.cnptia.embrapa.br/alice/handle/doc/1013073
10.3390/ijms16047839
identifier_str_mv International Journal of Molecular Sciences, v. 16, p. 7839-7850, 2015.
10.3390/ijms16047839
url http://www.alice.cnptia.embrapa.br/alice/handle/doc/1013073
dc.language.iso.fl_str_mv eng
language eng
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.source.none.fl_str_mv reponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
instacron:EMBRAPA
instname_str Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
instacron_str EMBRAPA
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reponame_str Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
collection Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
repository.name.fl_str_mv Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
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