Genetic variability and population structure of Salvia lachnostachys: implications for breeding and conservation programs.
Autor(a) principal: | |
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Data de Publicação: | 2015 |
Outros Autores: | , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) |
Texto Completo: | http://www.alice.cnptia.embrapa.br/alice/handle/doc/1013073 |
Resumo: | The genetic diversity and population structure of Salvia lachnostachys Benth were assessed. Inter Simple Sequence Repeat (ISSR) molecular markers were used to investigate the restricted distribution of S. lachnostachys in Parana State, Brazil. Leaves of 73 individuals representing three populations were collected. DNA was extracted and submitted to PCR-ISSR amplification with nine tested primers. Genetic diversity parameters were evaluated. Our analysis indicated 95.6% polymorphic loci (stress value 0.02) with a 0.79 average Simpson?s index. The Nei-Li distance dendrogram and principal component analysis largely recovered the geographical origin of each sample. Four major clusters were recognized representing each collected population. Nei?s gene diversity and Shannon?s information index were 0.25 and 0.40 respectively. As is typical for outcrossing herbs, the majority of genetic variation occurred at the population level (81.76%). A high gene flow (Nm = 2.48) was observed with a correspondingly low fixation index. These values were generally similar to previous studies on congeneric species. The results of principal coordinate analysis (PCA) and of arithmetic average (UPGMA) were consistent and all three populations appear distinct as in STRUCTURE analysis. In addition, this analysis indicated a majority intrapopulation genetic variation. Despite the human pressure on natural populations our study found high levels of genetic diversity for S. lachnostachys. This was the first molecular assessment for this endemic species with medicinal proprieties and the results can guide for subsequent bioprospection, breeding programs or conservation actions. |
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Genetic variability and population structure of Salvia lachnostachys: implications for breeding and conservation programs.Salvia lachnostachysVariabilidade genéticaEstrutura populacionalMelhoramento genéticoIntraspecific diversityISSRLabiataeConservaçãoThe genetic diversity and population structure of Salvia lachnostachys Benth were assessed. Inter Simple Sequence Repeat (ISSR) molecular markers were used to investigate the restricted distribution of S. lachnostachys in Parana State, Brazil. Leaves of 73 individuals representing three populations were collected. DNA was extracted and submitted to PCR-ISSR amplification with nine tested primers. Genetic diversity parameters were evaluated. Our analysis indicated 95.6% polymorphic loci (stress value 0.02) with a 0.79 average Simpson?s index. The Nei-Li distance dendrogram and principal component analysis largely recovered the geographical origin of each sample. Four major clusters were recognized representing each collected population. Nei?s gene diversity and Shannon?s information index were 0.25 and 0.40 respectively. As is typical for outcrossing herbs, the majority of genetic variation occurred at the population level (81.76%). A high gene flow (Nm = 2.48) was observed with a correspondingly low fixation index. These values were generally similar to previous studies on congeneric species. The results of principal coordinate analysis (PCA) and of arithmetic average (UPGMA) were consistent and all three populations appear distinct as in STRUCTURE analysis. In addition, this analysis indicated a majority intrapopulation genetic variation. Despite the human pressure on natural populations our study found high levels of genetic diversity for S. lachnostachys. This was the first molecular assessment for this endemic species with medicinal proprieties and the results can guide for subsequent bioprospection, breeding programs or conservation actions.Marianna Erbano, Pós-graduanda da UFPR; GUILHERME SCHNELL E SCHUHLI, CNPF; Élide Pereira dos Santos, UFPR.ERBANO, M.SCHUHLI, G. S. eSANTOS, É. P. dos2015-04-09T11:11:11Z2015-04-09T11:11:11Z2015-04-0920152015-04-09T11:11:11Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleInternational Journal of Molecular Sciences, v. 16, p. 7839-7850, 2015.http://www.alice.cnptia.embrapa.br/alice/handle/doc/101307310.3390/ijms16047839enginfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)instacron:EMBRAPA2017-08-16T02:12:41Zoai:www.alice.cnptia.embrapa.br:doc/1013073Repositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestopendoar:21542017-08-16T02:12:41falseRepositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestcg-riaa@embrapa.bropendoar:21542017-08-16T02:12:41Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa)false |
dc.title.none.fl_str_mv |
Genetic variability and population structure of Salvia lachnostachys: implications for breeding and conservation programs. |
title |
Genetic variability and population structure of Salvia lachnostachys: implications for breeding and conservation programs. |
spellingShingle |
Genetic variability and population structure of Salvia lachnostachys: implications for breeding and conservation programs. ERBANO, M. Salvia lachnostachys Variabilidade genética Estrutura populacional Melhoramento genético Intraspecific diversity ISSR Labiatae Conservação |
title_short |
Genetic variability and population structure of Salvia lachnostachys: implications for breeding and conservation programs. |
title_full |
Genetic variability and population structure of Salvia lachnostachys: implications for breeding and conservation programs. |
title_fullStr |
Genetic variability and population structure of Salvia lachnostachys: implications for breeding and conservation programs. |
title_full_unstemmed |
Genetic variability and population structure of Salvia lachnostachys: implications for breeding and conservation programs. |
title_sort |
Genetic variability and population structure of Salvia lachnostachys: implications for breeding and conservation programs. |
author |
ERBANO, M. |
author_facet |
ERBANO, M. SCHUHLI, G. S. e SANTOS, É. P. dos |
author_role |
author |
author2 |
SCHUHLI, G. S. e SANTOS, É. P. dos |
author2_role |
author author |
dc.contributor.none.fl_str_mv |
Marianna Erbano, Pós-graduanda da UFPR; GUILHERME SCHNELL E SCHUHLI, CNPF; Élide Pereira dos Santos, UFPR. |
dc.contributor.author.fl_str_mv |
ERBANO, M. SCHUHLI, G. S. e SANTOS, É. P. dos |
dc.subject.por.fl_str_mv |
Salvia lachnostachys Variabilidade genética Estrutura populacional Melhoramento genético Intraspecific diversity ISSR Labiatae Conservação |
topic |
Salvia lachnostachys Variabilidade genética Estrutura populacional Melhoramento genético Intraspecific diversity ISSR Labiatae Conservação |
description |
The genetic diversity and population structure of Salvia lachnostachys Benth were assessed. Inter Simple Sequence Repeat (ISSR) molecular markers were used to investigate the restricted distribution of S. lachnostachys in Parana State, Brazil. Leaves of 73 individuals representing three populations were collected. DNA was extracted and submitted to PCR-ISSR amplification with nine tested primers. Genetic diversity parameters were evaluated. Our analysis indicated 95.6% polymorphic loci (stress value 0.02) with a 0.79 average Simpson?s index. The Nei-Li distance dendrogram and principal component analysis largely recovered the geographical origin of each sample. Four major clusters were recognized representing each collected population. Nei?s gene diversity and Shannon?s information index were 0.25 and 0.40 respectively. As is typical for outcrossing herbs, the majority of genetic variation occurred at the population level (81.76%). A high gene flow (Nm = 2.48) was observed with a correspondingly low fixation index. These values were generally similar to previous studies on congeneric species. The results of principal coordinate analysis (PCA) and of arithmetic average (UPGMA) were consistent and all three populations appear distinct as in STRUCTURE analysis. In addition, this analysis indicated a majority intrapopulation genetic variation. Despite the human pressure on natural populations our study found high levels of genetic diversity for S. lachnostachys. This was the first molecular assessment for this endemic species with medicinal proprieties and the results can guide for subsequent bioprospection, breeding programs or conservation actions. |
publishDate |
2015 |
dc.date.none.fl_str_mv |
2015-04-09T11:11:11Z 2015-04-09T11:11:11Z 2015-04-09 2015 2015-04-09T11:11:11Z |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/publishedVersion info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
International Journal of Molecular Sciences, v. 16, p. 7839-7850, 2015. http://www.alice.cnptia.embrapa.br/alice/handle/doc/1013073 10.3390/ijms16047839 |
identifier_str_mv |
International Journal of Molecular Sciences, v. 16, p. 7839-7850, 2015. 10.3390/ijms16047839 |
url |
http://www.alice.cnptia.embrapa.br/alice/handle/doc/1013073 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.source.none.fl_str_mv |
reponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa) instacron:EMBRAPA |
instname_str |
Empresa Brasileira de Pesquisa Agropecuária (Embrapa) |
instacron_str |
EMBRAPA |
institution |
EMBRAPA |
reponame_str |
Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) |
collection |
Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) |
repository.name.fl_str_mv |
Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa) |
repository.mail.fl_str_mv |
cg-riaa@embrapa.br |
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1794503405226426368 |