Molecular analysis of genetic diversity among vine accessions using DNA markers.
Autor(a) principal: | |
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Data de Publicação: | 2017 |
Outros Autores: | , , , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) |
Texto Completo: | http://www.alice.cnptia.embrapa.br/alice/handle/doc/1082614 |
Resumo: | Viticulture presents a number of economic and social advantages, such as increasing employment levels and fixing the labor force in rural areas. With the aim of initiating a program of genetic improvement in grapevine from the State University of the state of Rio de Janeiro North Darcy Ribeiro, genetic diversity between 40 genotypes (varieties, rootstock, and species of different subgenera) was evaluated using Random amplified polymorphic DNA (RAPD) molecular markers. We built a matrix of binary data, whereby the presence of a band was assigned as "1" and the absence of a band was assigned as "0". The genetic distance was calculated between pairs of genotypes based on the arithmetic complement from the Jaccard Index. The results revealed the presence of considerable variability in the collection. Analysis of the genetic dissimilarity matrix revealed that the most dissimilar genotypes were Rupestris du Lot and Vitis rotundifolia because they were the most genetically distant (0.5972). The most similar were genotypes 31 (unidentified) and Rupestris du lot, which showed zero distance, confirming the results of field observations. A duplicate was confirmed, consistent with field observations, and a short distance was found between the variety "Italy" and its mutation, "Ruby". The grouping methods used were somewhat concordant. |
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Molecular analysis of genetic diversity among vine accessions using DNA markers.Análise molecularVideiraMarcador molecularVariação genéticaViticulture presents a number of economic and social advantages, such as increasing employment levels and fixing the labor force in rural areas. With the aim of initiating a program of genetic improvement in grapevine from the State University of the state of Rio de Janeiro North Darcy Ribeiro, genetic diversity between 40 genotypes (varieties, rootstock, and species of different subgenera) was evaluated using Random amplified polymorphic DNA (RAPD) molecular markers. We built a matrix of binary data, whereby the presence of a band was assigned as "1" and the absence of a band was assigned as "0". The genetic distance was calculated between pairs of genotypes based on the arithmetic complement from the Jaccard Index. The results revealed the presence of considerable variability in the collection. Analysis of the genetic dissimilarity matrix revealed that the most dissimilar genotypes were Rupestris du Lot and Vitis rotundifolia because they were the most genetically distant (0.5972). The most similar were genotypes 31 (unidentified) and Rupestris du lot, which showed zero distance, confirming the results of field observations. A duplicate was confirmed, consistent with field observations, and a short distance was found between the variety "Italy" and its mutation, "Ruby". The grouping methods used were somewhat concordant.Instituto Capixaba de Pesquisa, Assistência Técnica e Extensão Rural; Universidade Federal de Viçosa; Universidade Federal de Viçosa; FLAVIO DESSAUNE TARDIN, CNPMS; Universidade Estadual do Norte Fluminense Darcy Ribeiro; Universidade Estadual do Norte Fluminense Darcy Ribeiro; Universidade Estadual do Norte Fluminense Darcy Ribeiro; Universidade Estadual do Norte Fluminense Darcy Ribeiro.COSTA, A. F. daTEODORO, P. E.BHERING, L. L.TARDIN, F. D.DAHER, R. F.CAMPOS, W. F.VIANA, A. P.PEREIRA, M. G.2017-12-14T23:23:44Z2017-12-14T23:23:44Z2017-12-1420172017-12-14T23:23:44Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleGenetics and Molecular Research, Ribeirão Preto, v. 16, n. 2, p. 1-9, 2017.http://www.alice.cnptia.embrapa.br/alice/handle/doc/108261410.4238/gmr16029586enginfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)instacron:EMBRAPA2017-12-14T23:23:51Zoai:www.alice.cnptia.embrapa.br:doc/1082614Repositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestopendoar:21542017-12-14T23:23:51falseRepositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestcg-riaa@embrapa.bropendoar:21542017-12-14T23:23:51Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa)false |
dc.title.none.fl_str_mv |
Molecular analysis of genetic diversity among vine accessions using DNA markers. |
title |
Molecular analysis of genetic diversity among vine accessions using DNA markers. |
spellingShingle |
Molecular analysis of genetic diversity among vine accessions using DNA markers. COSTA, A. F. da Análise molecular Videira Marcador molecular Variação genética |
title_short |
Molecular analysis of genetic diversity among vine accessions using DNA markers. |
title_full |
Molecular analysis of genetic diversity among vine accessions using DNA markers. |
title_fullStr |
Molecular analysis of genetic diversity among vine accessions using DNA markers. |
title_full_unstemmed |
Molecular analysis of genetic diversity among vine accessions using DNA markers. |
title_sort |
Molecular analysis of genetic diversity among vine accessions using DNA markers. |
author |
COSTA, A. F. da |
author_facet |
COSTA, A. F. da TEODORO, P. E. BHERING, L. L. TARDIN, F. D. DAHER, R. F. CAMPOS, W. F. VIANA, A. P. PEREIRA, M. G. |
author_role |
author |
author2 |
TEODORO, P. E. BHERING, L. L. TARDIN, F. D. DAHER, R. F. CAMPOS, W. F. VIANA, A. P. PEREIRA, M. G. |
author2_role |
author author author author author author author |
dc.contributor.none.fl_str_mv |
Instituto Capixaba de Pesquisa, Assistência Técnica e Extensão Rural; Universidade Federal de Viçosa; Universidade Federal de Viçosa; FLAVIO DESSAUNE TARDIN, CNPMS; Universidade Estadual do Norte Fluminense Darcy Ribeiro; Universidade Estadual do Norte Fluminense Darcy Ribeiro; Universidade Estadual do Norte Fluminense Darcy Ribeiro; Universidade Estadual do Norte Fluminense Darcy Ribeiro. |
dc.contributor.author.fl_str_mv |
COSTA, A. F. da TEODORO, P. E. BHERING, L. L. TARDIN, F. D. DAHER, R. F. CAMPOS, W. F. VIANA, A. P. PEREIRA, M. G. |
dc.subject.por.fl_str_mv |
Análise molecular Videira Marcador molecular Variação genética |
topic |
Análise molecular Videira Marcador molecular Variação genética |
description |
Viticulture presents a number of economic and social advantages, such as increasing employment levels and fixing the labor force in rural areas. With the aim of initiating a program of genetic improvement in grapevine from the State University of the state of Rio de Janeiro North Darcy Ribeiro, genetic diversity between 40 genotypes (varieties, rootstock, and species of different subgenera) was evaluated using Random amplified polymorphic DNA (RAPD) molecular markers. We built a matrix of binary data, whereby the presence of a band was assigned as "1" and the absence of a band was assigned as "0". The genetic distance was calculated between pairs of genotypes based on the arithmetic complement from the Jaccard Index. The results revealed the presence of considerable variability in the collection. Analysis of the genetic dissimilarity matrix revealed that the most dissimilar genotypes were Rupestris du Lot and Vitis rotundifolia because they were the most genetically distant (0.5972). The most similar were genotypes 31 (unidentified) and Rupestris du lot, which showed zero distance, confirming the results of field observations. A duplicate was confirmed, consistent with field observations, and a short distance was found between the variety "Italy" and its mutation, "Ruby". The grouping methods used were somewhat concordant. |
publishDate |
2017 |
dc.date.none.fl_str_mv |
2017-12-14T23:23:44Z 2017-12-14T23:23:44Z 2017-12-14 2017 2017-12-14T23:23:44Z |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/publishedVersion info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
Genetics and Molecular Research, Ribeirão Preto, v. 16, n. 2, p. 1-9, 2017. http://www.alice.cnptia.embrapa.br/alice/handle/doc/1082614 10.4238/gmr16029586 |
identifier_str_mv |
Genetics and Molecular Research, Ribeirão Preto, v. 16, n. 2, p. 1-9, 2017. 10.4238/gmr16029586 |
url |
http://www.alice.cnptia.embrapa.br/alice/handle/doc/1082614 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.source.none.fl_str_mv |
reponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa) instacron:EMBRAPA |
instname_str |
Empresa Brasileira de Pesquisa Agropecuária (Embrapa) |
instacron_str |
EMBRAPA |
institution |
EMBRAPA |
reponame_str |
Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) |
collection |
Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) |
repository.name.fl_str_mv |
Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa) |
repository.mail.fl_str_mv |
cg-riaa@embrapa.br |
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1794503446571778048 |