Discovery and molecular characterization of a novel enamovirus, Grapevine enamovirus-1.
Autor(a) principal: | |
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Data de Publicação: | 2017 |
Outros Autores: | , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) |
Texto Completo: | http://www.alice.cnptia.embrapa.br/alice/handle/doc/1071596 |
Resumo: | In this study, we describe a novel putative Enamovirus member, Grapevine enamovirus-1 (GEV-1), discovered by high-throughput sequencing (HTS). A limited survey using HTS of 17 grapevines (Vitis spp.) from the south, southeast, and northeast regions of Brazil led to the detection of GEV-1 exclusively on southern plants, infecting four grapevine cultivars (Cabernet Sauvignon, Semillon, CG 90450, and Cabernet franc) with a remark-able identity of around 99% at the nucleotide level. This novel virus was only detected in multiple-virus infected plants exhibiting viral-like symptoms. GEV-1 was also detected on a cv. Malvasia Longa by RT-PCR. We performed graft-transmissibility assays on GEV-1. The organization, products, and cis-acting regulatory elements of GEV-1 genome are also discussed here. The near complete genome sequence of GEV-1 was obtained during the course of this study, lacking only part of the 3 0 untranslated terminal region. This is the first report of a virus in the family Luteoviridae infecting grapevines. Based on its genomic properties and phylogenetic analyses, GEV-1 should be classified as a new member of the genus Enamovirus . Keywords High-throughput sequencing Virus discovery Luteoviridae Grapevine enamovirus-1 GEV-1 |
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Discovery and molecular characterization of a novel enamovirus, Grapevine enamovirus-1.High-throughput sequencingGrapevine enamovirus-1GEV-1LuteoviridaeIn this study, we describe a novel putative Enamovirus member, Grapevine enamovirus-1 (GEV-1), discovered by high-throughput sequencing (HTS). A limited survey using HTS of 17 grapevines (Vitis spp.) from the south, southeast, and northeast regions of Brazil led to the detection of GEV-1 exclusively on southern plants, infecting four grapevine cultivars (Cabernet Sauvignon, Semillon, CG 90450, and Cabernet franc) with a remark-able identity of around 99% at the nucleotide level. This novel virus was only detected in multiple-virus infected plants exhibiting viral-like symptoms. GEV-1 was also detected on a cv. Malvasia Longa by RT-PCR. We performed graft-transmissibility assays on GEV-1. The organization, products, and cis-acting regulatory elements of GEV-1 genome are also discussed here. The near complete genome sequence of GEV-1 was obtained during the course of this study, lacking only part of the 3 0 untranslated terminal region. This is the first report of a virus in the family Luteoviridae infecting grapevines. Based on its genomic properties and phylogenetic analyses, GEV-1 should be classified as a new member of the genus Enamovirus . Keywords High-throughput sequencing Virus discovery Luteoviridae Grapevine enamovirus-1 GEV-1João Marcos Fagundes Silva, University of Bras?lia, Bras?lia, DF, Brazil; Maher Al Rwahnih, Department of Plant Pathology, University of California, Davis, CA, USA; Rosana Blawid, University of Bras? ? lia, Bras? ? lia, DF, Brazil; Tatsuya Nagata, University of Bras?lia, Bras?lia, DF, Brazil; THOR VINICIUS MARTINS FAJARDO, CNPUV.SILVA, J. M. FRWAHNIH, M. A.BLAWID, R.NAGATA, T.FAJARDO, T. V. M.2017-06-27T11:11:11Z2017-06-27T11:11:11Z2017-06-2720172019-05-06T11:11:11Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleVirus Genes, v.53, n. 4, p. 667-671 [online], 2017.http://www.alice.cnptia.embrapa.br/alice/handle/doc/107159610.1007/s11262-017-1470-yenginfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)instacron:EMBRAPA2017-08-16T04:33:27Zoai:www.alice.cnptia.embrapa.br:doc/1071596Repositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestopendoar:21542017-08-16T04:33:27falseRepositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestcg-riaa@embrapa.bropendoar:21542017-08-16T04:33:27Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa)false |
dc.title.none.fl_str_mv |
Discovery and molecular characterization of a novel enamovirus, Grapevine enamovirus-1. |
title |
Discovery and molecular characterization of a novel enamovirus, Grapevine enamovirus-1. |
spellingShingle |
Discovery and molecular characterization of a novel enamovirus, Grapevine enamovirus-1. SILVA, J. M. F High-throughput sequencing Grapevine enamovirus-1 GEV-1 Luteoviridae |
title_short |
Discovery and molecular characterization of a novel enamovirus, Grapevine enamovirus-1. |
title_full |
Discovery and molecular characterization of a novel enamovirus, Grapevine enamovirus-1. |
title_fullStr |
Discovery and molecular characterization of a novel enamovirus, Grapevine enamovirus-1. |
title_full_unstemmed |
Discovery and molecular characterization of a novel enamovirus, Grapevine enamovirus-1. |
title_sort |
Discovery and molecular characterization of a novel enamovirus, Grapevine enamovirus-1. |
author |
SILVA, J. M. F |
author_facet |
SILVA, J. M. F RWAHNIH, M. A. BLAWID, R. NAGATA, T. FAJARDO, T. V. M. |
author_role |
author |
author2 |
RWAHNIH, M. A. BLAWID, R. NAGATA, T. FAJARDO, T. V. M. |
author2_role |
author author author author |
dc.contributor.none.fl_str_mv |
João Marcos Fagundes Silva, University of Bras?lia, Bras?lia, DF, Brazil; Maher Al Rwahnih, Department of Plant Pathology, University of California, Davis, CA, USA; Rosana Blawid, University of Bras? ? lia, Bras? ? lia, DF, Brazil; Tatsuya Nagata, University of Bras?lia, Bras?lia, DF, Brazil; THOR VINICIUS MARTINS FAJARDO, CNPUV. |
dc.contributor.author.fl_str_mv |
SILVA, J. M. F RWAHNIH, M. A. BLAWID, R. NAGATA, T. FAJARDO, T. V. M. |
dc.subject.por.fl_str_mv |
High-throughput sequencing Grapevine enamovirus-1 GEV-1 Luteoviridae |
topic |
High-throughput sequencing Grapevine enamovirus-1 GEV-1 Luteoviridae |
description |
In this study, we describe a novel putative Enamovirus member, Grapevine enamovirus-1 (GEV-1), discovered by high-throughput sequencing (HTS). A limited survey using HTS of 17 grapevines (Vitis spp.) from the south, southeast, and northeast regions of Brazil led to the detection of GEV-1 exclusively on southern plants, infecting four grapevine cultivars (Cabernet Sauvignon, Semillon, CG 90450, and Cabernet franc) with a remark-able identity of around 99% at the nucleotide level. This novel virus was only detected in multiple-virus infected plants exhibiting viral-like symptoms. GEV-1 was also detected on a cv. Malvasia Longa by RT-PCR. We performed graft-transmissibility assays on GEV-1. The organization, products, and cis-acting regulatory elements of GEV-1 genome are also discussed here. The near complete genome sequence of GEV-1 was obtained during the course of this study, lacking only part of the 3 0 untranslated terminal region. This is the first report of a virus in the family Luteoviridae infecting grapevines. Based on its genomic properties and phylogenetic analyses, GEV-1 should be classified as a new member of the genus Enamovirus . Keywords High-throughput sequencing Virus discovery Luteoviridae Grapevine enamovirus-1 GEV-1 |
publishDate |
2017 |
dc.date.none.fl_str_mv |
2017-06-27T11:11:11Z 2017-06-27T11:11:11Z 2017-06-27 2017 2019-05-06T11:11:11Z |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/publishedVersion info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
Virus Genes, v.53, n. 4, p. 667-671 [online], 2017. http://www.alice.cnptia.embrapa.br/alice/handle/doc/1071596 10.1007/s11262-017-1470-y |
identifier_str_mv |
Virus Genes, v.53, n. 4, p. 667-671 [online], 2017. 10.1007/s11262-017-1470-y |
url |
http://www.alice.cnptia.embrapa.br/alice/handle/doc/1071596 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.source.none.fl_str_mv |
reponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa) instacron:EMBRAPA |
instname_str |
Empresa Brasileira de Pesquisa Agropecuária (Embrapa) |
instacron_str |
EMBRAPA |
institution |
EMBRAPA |
reponame_str |
Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) |
collection |
Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) |
repository.name.fl_str_mv |
Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa) |
repository.mail.fl_str_mv |
cg-riaa@embrapa.br |
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1794503438277541888 |