Discovery and molecular characterization of a novel enamovirus, Grapevine enamovirus-1.

Detalhes bibliográficos
Autor(a) principal: SILVA, J. M. F
Data de Publicação: 2017
Outros Autores: RWAHNIH, M. A., BLAWID, R., NAGATA, T., FAJARDO, T. V. M.
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
Texto Completo: http://www.alice.cnptia.embrapa.br/alice/handle/doc/1071596
Resumo: In this study, we describe a novel putative Enamovirus member, Grapevine enamovirus-1 (GEV-1), discovered by high-throughput sequencing (HTS). A limited survey using HTS of 17 grapevines (Vitis spp.) from the south, southeast, and northeast regions of Brazil led to the detection of GEV-1 exclusively on southern plants, infecting four grapevine cultivars (Cabernet Sauvignon, Semillon, CG 90450, and Cabernet franc) with a remark-able identity of around 99% at the nucleotide level. This novel virus was only detected in multiple-virus infected plants exhibiting viral-like symptoms. GEV-1 was also detected on a cv. Malvasia Longa by RT-PCR. We performed graft-transmissibility assays on GEV-1. The organization, products, and cis-acting regulatory elements of GEV-1 genome are also discussed here. The near complete genome sequence of GEV-1 was obtained during the course of this study, lacking only part of the 3 0 untranslated terminal region. This is the first report of a virus in the family Luteoviridae infecting grapevines. Based on its genomic properties and phylogenetic analyses, GEV-1 should be classified as a new member of the genus Enamovirus . Keywords High-throughput sequencing Virus discovery Luteoviridae Grapevine enamovirus-1 GEV-1
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spelling Discovery and molecular characterization of a novel enamovirus, Grapevine enamovirus-1.High-throughput sequencingGrapevine enamovirus-1GEV-1LuteoviridaeIn this study, we describe a novel putative Enamovirus member, Grapevine enamovirus-1 (GEV-1), discovered by high-throughput sequencing (HTS). A limited survey using HTS of 17 grapevines (Vitis spp.) from the south, southeast, and northeast regions of Brazil led to the detection of GEV-1 exclusively on southern plants, infecting four grapevine cultivars (Cabernet Sauvignon, Semillon, CG 90450, and Cabernet franc) with a remark-able identity of around 99% at the nucleotide level. This novel virus was only detected in multiple-virus infected plants exhibiting viral-like symptoms. GEV-1 was also detected on a cv. Malvasia Longa by RT-PCR. We performed graft-transmissibility assays on GEV-1. The organization, products, and cis-acting regulatory elements of GEV-1 genome are also discussed here. The near complete genome sequence of GEV-1 was obtained during the course of this study, lacking only part of the 3 0 untranslated terminal region. This is the first report of a virus in the family Luteoviridae infecting grapevines. Based on its genomic properties and phylogenetic analyses, GEV-1 should be classified as a new member of the genus Enamovirus . Keywords High-throughput sequencing Virus discovery Luteoviridae Grapevine enamovirus-1 GEV-1João Marcos Fagundes Silva, University of Bras?lia, Bras?lia, DF, Brazil; Maher Al Rwahnih, Department of Plant Pathology, University of California, Davis, CA, USA; Rosana Blawid, University of Bras? ? lia, Bras? ? lia, DF, Brazil; Tatsuya Nagata, University of Bras?lia, Bras?lia, DF, Brazil; THOR VINICIUS MARTINS FAJARDO, CNPUV.SILVA, J. M. FRWAHNIH, M. A.BLAWID, R.NAGATA, T.FAJARDO, T. V. M.2017-06-27T11:11:11Z2017-06-27T11:11:11Z2017-06-2720172019-05-06T11:11:11Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleVirus Genes, v.53, n. 4, p. 667-671 [online], 2017.http://www.alice.cnptia.embrapa.br/alice/handle/doc/107159610.1007/s11262-017-1470-yenginfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)instacron:EMBRAPA2017-08-16T04:33:27Zoai:www.alice.cnptia.embrapa.br:doc/1071596Repositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestopendoar:21542017-08-16T04:33:27falseRepositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestcg-riaa@embrapa.bropendoar:21542017-08-16T04:33:27Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa)false
dc.title.none.fl_str_mv Discovery and molecular characterization of a novel enamovirus, Grapevine enamovirus-1.
title Discovery and molecular characterization of a novel enamovirus, Grapevine enamovirus-1.
spellingShingle Discovery and molecular characterization of a novel enamovirus, Grapevine enamovirus-1.
SILVA, J. M. F
High-throughput sequencing
Grapevine enamovirus-1
GEV-1
Luteoviridae
title_short Discovery and molecular characterization of a novel enamovirus, Grapevine enamovirus-1.
title_full Discovery and molecular characterization of a novel enamovirus, Grapevine enamovirus-1.
title_fullStr Discovery and molecular characterization of a novel enamovirus, Grapevine enamovirus-1.
title_full_unstemmed Discovery and molecular characterization of a novel enamovirus, Grapevine enamovirus-1.
title_sort Discovery and molecular characterization of a novel enamovirus, Grapevine enamovirus-1.
author SILVA, J. M. F
author_facet SILVA, J. M. F
RWAHNIH, M. A.
BLAWID, R.
NAGATA, T.
FAJARDO, T. V. M.
author_role author
author2 RWAHNIH, M. A.
BLAWID, R.
NAGATA, T.
FAJARDO, T. V. M.
author2_role author
author
author
author
dc.contributor.none.fl_str_mv João Marcos Fagundes Silva, University of Bras?lia, Bras?lia, DF, Brazil; Maher Al Rwahnih, Department of Plant Pathology, University of California, Davis, CA, USA; Rosana Blawid, University of Bras? ? lia, Bras? ? lia, DF, Brazil; Tatsuya Nagata, University of Bras?lia, Bras?lia, DF, Brazil; THOR VINICIUS MARTINS FAJARDO, CNPUV.
dc.contributor.author.fl_str_mv SILVA, J. M. F
RWAHNIH, M. A.
BLAWID, R.
NAGATA, T.
FAJARDO, T. V. M.
dc.subject.por.fl_str_mv High-throughput sequencing
Grapevine enamovirus-1
GEV-1
Luteoviridae
topic High-throughput sequencing
Grapevine enamovirus-1
GEV-1
Luteoviridae
description In this study, we describe a novel putative Enamovirus member, Grapevine enamovirus-1 (GEV-1), discovered by high-throughput sequencing (HTS). A limited survey using HTS of 17 grapevines (Vitis spp.) from the south, southeast, and northeast regions of Brazil led to the detection of GEV-1 exclusively on southern plants, infecting four grapevine cultivars (Cabernet Sauvignon, Semillon, CG 90450, and Cabernet franc) with a remark-able identity of around 99% at the nucleotide level. This novel virus was only detected in multiple-virus infected plants exhibiting viral-like symptoms. GEV-1 was also detected on a cv. Malvasia Longa by RT-PCR. We performed graft-transmissibility assays on GEV-1. The organization, products, and cis-acting regulatory elements of GEV-1 genome are also discussed here. The near complete genome sequence of GEV-1 was obtained during the course of this study, lacking only part of the 3 0 untranslated terminal region. This is the first report of a virus in the family Luteoviridae infecting grapevines. Based on its genomic properties and phylogenetic analyses, GEV-1 should be classified as a new member of the genus Enamovirus . Keywords High-throughput sequencing Virus discovery Luteoviridae Grapevine enamovirus-1 GEV-1
publishDate 2017
dc.date.none.fl_str_mv 2017-06-27T11:11:11Z
2017-06-27T11:11:11Z
2017-06-27
2017
2019-05-06T11:11:11Z
dc.type.driver.fl_str_mv info:eu-repo/semantics/publishedVersion
info:eu-repo/semantics/article
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status_str publishedVersion
dc.identifier.uri.fl_str_mv Virus Genes, v.53, n. 4, p. 667-671 [online], 2017.
http://www.alice.cnptia.embrapa.br/alice/handle/doc/1071596
10.1007/s11262-017-1470-y
identifier_str_mv Virus Genes, v.53, n. 4, p. 667-671 [online], 2017.
10.1007/s11262-017-1470-y
url http://www.alice.cnptia.embrapa.br/alice/handle/doc/1071596
dc.language.iso.fl_str_mv eng
language eng
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.source.none.fl_str_mv reponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
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collection Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
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