First report of Hop stunt viroid infecting Vitis gigas, V. flexuosa and Ampelopsis heterophylla.

Detalhes bibliográficos
Autor(a) principal: FAJARDO, T. V. M.
Data de Publicação: 2018
Outros Autores: EIRAS, M., NICKEL, O.
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
Texto Completo: http://www.alice.cnptia.embrapa.br/alice/handle/doc/1088430
Resumo: Hop stunt viroid (HSVd) is one of the most common viroids that infect grapevine ( Vitis spp.) worldwide. Sixteen sequences of the HSVd genome were obtained from infected grapevines in Brazil by next generation sequencing (NGS). Multiple alignments of the sequences showed nucleotide identities ranging from 94.6% to 100%. This is the first report of HSVd infecting two wild grape species and Ampelopsis heterophylla . These HSVd isolates along with others from V. vinifera and V. labrusca were phylogenetically analyzed. Keywords: Next generation sequencing . HSVd . Incidence . Genetic variability . Vitis
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spelling First report of Hop stunt viroid infecting Vitis gigas, V. flexuosa and Ampelopsis heterophylla.Next generation sequencingHSVdGrapevineGenetic variabilityVitis LabruscaVitis ViniferaIncidenceVitisHop stunt viroidViroidsBrazilHop stunt viroid (HSVd) is one of the most common viroids that infect grapevine ( Vitis spp.) worldwide. Sixteen sequences of the HSVd genome were obtained from infected grapevines in Brazil by next generation sequencing (NGS). Multiple alignments of the sequences showed nucleotide identities ranging from 94.6% to 100%. This is the first report of HSVd infecting two wild grape species and Ampelopsis heterophylla . These HSVd isolates along with others from V. vinifera and V. labrusca were phylogenetically analyzed. Keywords: Next generation sequencing . HSVd . Incidence . Genetic variability . VitisTHOR VINICIUS MARTINS FAJARDO, CNPUV; Marcelo Eiras, Instituto Biológico, Av. Conselheiro Rodrigues Alves, 1252, São Paulo, SP CEP 04014-002, Brazil; OSMAR NICKEL, CNPUV.FAJARDO, T. V. M.EIRAS, M.NICKEL, O.2019-05-01T00:43:43Z2019-05-01T00:43:43Z2018-03-0220182019-05-01T00:43:43Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleAustralasian Plant Disease Notes, v. 13, n. 3, 2018 [online].http://www.alice.cnptia.embrapa.br/alice/handle/doc/1088430enginfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)instacron:EMBRAPA2019-05-01T00:43:50Zoai:www.alice.cnptia.embrapa.br:doc/1088430Repositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestcg-riaa@embrapa.bropendoar:21542019-05-01T00:43:50Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa)false
dc.title.none.fl_str_mv First report of Hop stunt viroid infecting Vitis gigas, V. flexuosa and Ampelopsis heterophylla.
title First report of Hop stunt viroid infecting Vitis gigas, V. flexuosa and Ampelopsis heterophylla.
spellingShingle First report of Hop stunt viroid infecting Vitis gigas, V. flexuosa and Ampelopsis heterophylla.
FAJARDO, T. V. M.
Next generation sequencing
HSVd
Grapevine
Genetic variability
Vitis Labrusca
Vitis Vinifera
Incidence
Vitis
Hop stunt viroid
Viroids
Brazil
title_short First report of Hop stunt viroid infecting Vitis gigas, V. flexuosa and Ampelopsis heterophylla.
title_full First report of Hop stunt viroid infecting Vitis gigas, V. flexuosa and Ampelopsis heterophylla.
title_fullStr First report of Hop stunt viroid infecting Vitis gigas, V. flexuosa and Ampelopsis heterophylla.
title_full_unstemmed First report of Hop stunt viroid infecting Vitis gigas, V. flexuosa and Ampelopsis heterophylla.
title_sort First report of Hop stunt viroid infecting Vitis gigas, V. flexuosa and Ampelopsis heterophylla.
author FAJARDO, T. V. M.
author_facet FAJARDO, T. V. M.
EIRAS, M.
NICKEL, O.
author_role author
author2 EIRAS, M.
NICKEL, O.
author2_role author
author
dc.contributor.none.fl_str_mv THOR VINICIUS MARTINS FAJARDO, CNPUV; Marcelo Eiras, Instituto Biológico, Av. Conselheiro Rodrigues Alves, 1252, São Paulo, SP CEP 04014-002, Brazil; OSMAR NICKEL, CNPUV.
dc.contributor.author.fl_str_mv FAJARDO, T. V. M.
EIRAS, M.
NICKEL, O.
dc.subject.por.fl_str_mv Next generation sequencing
HSVd
Grapevine
Genetic variability
Vitis Labrusca
Vitis Vinifera
Incidence
Vitis
Hop stunt viroid
Viroids
Brazil
topic Next generation sequencing
HSVd
Grapevine
Genetic variability
Vitis Labrusca
Vitis Vinifera
Incidence
Vitis
Hop stunt viroid
Viroids
Brazil
description Hop stunt viroid (HSVd) is one of the most common viroids that infect grapevine ( Vitis spp.) worldwide. Sixteen sequences of the HSVd genome were obtained from infected grapevines in Brazil by next generation sequencing (NGS). Multiple alignments of the sequences showed nucleotide identities ranging from 94.6% to 100%. This is the first report of HSVd infecting two wild grape species and Ampelopsis heterophylla . These HSVd isolates along with others from V. vinifera and V. labrusca were phylogenetically analyzed. Keywords: Next generation sequencing . HSVd . Incidence . Genetic variability . Vitis
publishDate 2018
dc.date.none.fl_str_mv 2018-03-02
2018
2019-05-01T00:43:43Z
2019-05-01T00:43:43Z
2019-05-01T00:43:43Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv Australasian Plant Disease Notes, v. 13, n. 3, 2018 [online].
http://www.alice.cnptia.embrapa.br/alice/handle/doc/1088430
identifier_str_mv Australasian Plant Disease Notes, v. 13, n. 3, 2018 [online].
url http://www.alice.cnptia.embrapa.br/alice/handle/doc/1088430
dc.language.iso.fl_str_mv eng
language eng
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.source.none.fl_str_mv reponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
instacron:EMBRAPA
instname_str Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
instacron_str EMBRAPA
institution EMBRAPA
reponame_str Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
collection Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
repository.name.fl_str_mv Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
repository.mail.fl_str_mv cg-riaa@embrapa.br
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