InteractiVenn: a web-based tool for theanalysis of sets through Venn diagrams.
Autor(a) principal: | |
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Data de Publicação: | 2015 |
Outros Autores: | , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) |
Texto Completo: | http://www.alice.cnptia.embrapa.br/alice/handle/doc/1105705 |
Resumo: | Abstract. Background: Set comparisons permeate a large number of data analysis workflows, in particular workflows in biological sciences. Venn diagrams are frequently employed for such analysis but current tools are limited. Results: We have developed InteractiVenn, a more flexible tool for interacting with Venn diagrams including up to six sets. It offers a clean interface for Venn diagram construction and enables analysis of set unions while preserving the shape of the diagram. Set unions are useful to reveal differences and similarities among sets and may be guided in our tool by a tree or by a list of set unions. The tool also allows obtaining subsets? elements, saving and loading sets for further analyses, and exporting the diagram in vector and image formats. InteractiVenn has been used to analyze two biological datasets, but it may serve set analysis in a broad range of domains. Conclusions: InteractiVenn allows set unions in Venn diagrams to be explored thoroughly, by consequence extending the ability to analyze combinations of sets with additional observations, yielded by novel interactions between joined sets. InteractiVenn is freely available online at: www.interactivenn.net. |
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InteractiVenn: a web-based tool for theanalysis of sets through Venn diagrams.Diagrama de VennDiagrama de Edwards-VennVenn diagramEdwards-Venn diagramInteractionSet-unionsAbstract. Background: Set comparisons permeate a large number of data analysis workflows, in particular workflows in biological sciences. Venn diagrams are frequently employed for such analysis but current tools are limited. Results: We have developed InteractiVenn, a more flexible tool for interacting with Venn diagrams including up to six sets. It offers a clean interface for Venn diagram construction and enables analysis of set unions while preserving the shape of the diagram. Set unions are useful to reveal differences and similarities among sets and may be guided in our tool by a tree or by a list of set unions. The tool also allows obtaining subsets? elements, saving and loading sets for further analyses, and exporting the diagram in vector and image formats. InteractiVenn has been used to analyze two biological datasets, but it may serve set analysis in a broad range of domains. Conclusions: InteractiVenn allows set unions in Venn diagrams to be explored thoroughly, by consequence extending the ability to analyze combinations of sets with additional observations, yielded by novel interactions between joined sets. InteractiVenn is freely available online at: www.interactivenn.net.Article number: 169.HENRY HEBERLE, ICMC/USP; GABRIELA VAZ MEIRELLES, Laboratório Nacional de Biociências, Campinas; FELIPE RODRIGUES DA SILVA, CNPTIA; GUILHERME P. TELLES, IC/Unicamp; ROSANE MINGHIM, ICMC/USP.HEBERLE, H.MEIRELLES, G. V.SILVA, F. R. daTELLES, G. P.MINGHIM, R.2019-02-07T23:38:14Z2019-02-07T23:38:14Z2019-02-0720152019-12-19T11:11:11Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleBMC Bioinformatics, v. 16, p. 1-7, 2015.http://www.alice.cnptia.embrapa.br/alice/handle/doc/110570510.1186/s12859-015-0611-3enginfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)instacron:EMBRAPA2019-02-07T23:38:21Zoai:www.alice.cnptia.embrapa.br:doc/1105705Repositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestopendoar:21542019-02-07T23:38:21falseRepositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestcg-riaa@embrapa.bropendoar:21542019-02-07T23:38:21Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa)false |
dc.title.none.fl_str_mv |
InteractiVenn: a web-based tool for theanalysis of sets through Venn diagrams. |
title |
InteractiVenn: a web-based tool for theanalysis of sets through Venn diagrams. |
spellingShingle |
InteractiVenn: a web-based tool for theanalysis of sets through Venn diagrams. HEBERLE, H. Diagrama de Venn Diagrama de Edwards-Venn Venn diagram Edwards-Venn diagram Interaction Set-unions |
title_short |
InteractiVenn: a web-based tool for theanalysis of sets through Venn diagrams. |
title_full |
InteractiVenn: a web-based tool for theanalysis of sets through Venn diagrams. |
title_fullStr |
InteractiVenn: a web-based tool for theanalysis of sets through Venn diagrams. |
title_full_unstemmed |
InteractiVenn: a web-based tool for theanalysis of sets through Venn diagrams. |
title_sort |
InteractiVenn: a web-based tool for theanalysis of sets through Venn diagrams. |
author |
HEBERLE, H. |
author_facet |
HEBERLE, H. MEIRELLES, G. V. SILVA, F. R. da TELLES, G. P. MINGHIM, R. |
author_role |
author |
author2 |
MEIRELLES, G. V. SILVA, F. R. da TELLES, G. P. MINGHIM, R. |
author2_role |
author author author author |
dc.contributor.none.fl_str_mv |
HENRY HEBERLE, ICMC/USP; GABRIELA VAZ MEIRELLES, Laboratório Nacional de Biociências, Campinas; FELIPE RODRIGUES DA SILVA, CNPTIA; GUILHERME P. TELLES, IC/Unicamp; ROSANE MINGHIM, ICMC/USP. |
dc.contributor.author.fl_str_mv |
HEBERLE, H. MEIRELLES, G. V. SILVA, F. R. da TELLES, G. P. MINGHIM, R. |
dc.subject.por.fl_str_mv |
Diagrama de Venn Diagrama de Edwards-Venn Venn diagram Edwards-Venn diagram Interaction Set-unions |
topic |
Diagrama de Venn Diagrama de Edwards-Venn Venn diagram Edwards-Venn diagram Interaction Set-unions |
description |
Abstract. Background: Set comparisons permeate a large number of data analysis workflows, in particular workflows in biological sciences. Venn diagrams are frequently employed for such analysis but current tools are limited. Results: We have developed InteractiVenn, a more flexible tool for interacting with Venn diagrams including up to six sets. It offers a clean interface for Venn diagram construction and enables analysis of set unions while preserving the shape of the diagram. Set unions are useful to reveal differences and similarities among sets and may be guided in our tool by a tree or by a list of set unions. The tool also allows obtaining subsets? elements, saving and loading sets for further analyses, and exporting the diagram in vector and image formats. InteractiVenn has been used to analyze two biological datasets, but it may serve set analysis in a broad range of domains. Conclusions: InteractiVenn allows set unions in Venn diagrams to be explored thoroughly, by consequence extending the ability to analyze combinations of sets with additional observations, yielded by novel interactions between joined sets. InteractiVenn is freely available online at: www.interactivenn.net. |
publishDate |
2015 |
dc.date.none.fl_str_mv |
2015 2019-02-07T23:38:14Z 2019-02-07T23:38:14Z 2019-02-07 2019-12-19T11:11:11Z |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/publishedVersion info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
BMC Bioinformatics, v. 16, p. 1-7, 2015. http://www.alice.cnptia.embrapa.br/alice/handle/doc/1105705 10.1186/s12859-015-0611-3 |
identifier_str_mv |
BMC Bioinformatics, v. 16, p. 1-7, 2015. 10.1186/s12859-015-0611-3 |
url |
http://www.alice.cnptia.embrapa.br/alice/handle/doc/1105705 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.source.none.fl_str_mv |
reponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa) instacron:EMBRAPA |
instname_str |
Empresa Brasileira de Pesquisa Agropecuária (Embrapa) |
instacron_str |
EMBRAPA |
institution |
EMBRAPA |
reponame_str |
Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) |
collection |
Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) |
repository.name.fl_str_mv |
Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa) |
repository.mail.fl_str_mv |
cg-riaa@embrapa.br |
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1794503470998355968 |