InteractiVenn: a web-based tool for theanalysis of sets through Venn diagrams.

Detalhes bibliográficos
Autor(a) principal: HEBERLE, H.
Data de Publicação: 2015
Outros Autores: MEIRELLES, G. V., SILVA, F. R. da, TELLES, G. P., MINGHIM, R.
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
Texto Completo: http://www.alice.cnptia.embrapa.br/alice/handle/doc/1105705
Resumo: Abstract. Background: Set comparisons permeate a large number of data analysis workflows, in particular workflows in biological sciences. Venn diagrams are frequently employed for such analysis but current tools are limited. Results: We have developed InteractiVenn, a more flexible tool for interacting with Venn diagrams including up to six sets. It offers a clean interface for Venn diagram construction and enables analysis of set unions while preserving the shape of the diagram. Set unions are useful to reveal differences and similarities among sets and may be guided in our tool by a tree or by a list of set unions. The tool also allows obtaining subsets? elements, saving and loading sets for further analyses, and exporting the diagram in vector and image formats. InteractiVenn has been used to analyze two biological datasets, but it may serve set analysis in a broad range of domains. Conclusions: InteractiVenn allows set unions in Venn diagrams to be explored thoroughly, by consequence extending the ability to analyze combinations of sets with additional observations, yielded by novel interactions between joined sets. InteractiVenn is freely available online at: www.interactivenn.net.
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spelling InteractiVenn: a web-based tool for theanalysis of sets through Venn diagrams.Diagrama de VennDiagrama de Edwards-VennVenn diagramEdwards-Venn diagramInteractionSet-unionsAbstract. Background: Set comparisons permeate a large number of data analysis workflows, in particular workflows in biological sciences. Venn diagrams are frequently employed for such analysis but current tools are limited. Results: We have developed InteractiVenn, a more flexible tool for interacting with Venn diagrams including up to six sets. It offers a clean interface for Venn diagram construction and enables analysis of set unions while preserving the shape of the diagram. Set unions are useful to reveal differences and similarities among sets and may be guided in our tool by a tree or by a list of set unions. The tool also allows obtaining subsets? elements, saving and loading sets for further analyses, and exporting the diagram in vector and image formats. InteractiVenn has been used to analyze two biological datasets, but it may serve set analysis in a broad range of domains. Conclusions: InteractiVenn allows set unions in Venn diagrams to be explored thoroughly, by consequence extending the ability to analyze combinations of sets with additional observations, yielded by novel interactions between joined sets. InteractiVenn is freely available online at: www.interactivenn.net.Article number: 169.HENRY HEBERLE, ICMC/USP; GABRIELA VAZ MEIRELLES, Laboratório Nacional de Biociências, Campinas; FELIPE RODRIGUES DA SILVA, CNPTIA; GUILHERME P. TELLES, IC/Unicamp; ROSANE MINGHIM, ICMC/USP.HEBERLE, H.MEIRELLES, G. V.SILVA, F. R. daTELLES, G. P.MINGHIM, R.2019-02-07T23:38:14Z2019-02-07T23:38:14Z2019-02-0720152019-12-19T11:11:11Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleBMC Bioinformatics, v. 16, p. 1-7, 2015.http://www.alice.cnptia.embrapa.br/alice/handle/doc/110570510.1186/s12859-015-0611-3enginfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)instacron:EMBRAPA2019-02-07T23:38:21Zoai:www.alice.cnptia.embrapa.br:doc/1105705Repositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestopendoar:21542019-02-07T23:38:21falseRepositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestcg-riaa@embrapa.bropendoar:21542019-02-07T23:38:21Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa)false
dc.title.none.fl_str_mv InteractiVenn: a web-based tool for theanalysis of sets through Venn diagrams.
title InteractiVenn: a web-based tool for theanalysis of sets through Venn diagrams.
spellingShingle InteractiVenn: a web-based tool for theanalysis of sets through Venn diagrams.
HEBERLE, H.
Diagrama de Venn
Diagrama de Edwards-Venn
Venn diagram
Edwards-Venn diagram
Interaction
Set-unions
title_short InteractiVenn: a web-based tool for theanalysis of sets through Venn diagrams.
title_full InteractiVenn: a web-based tool for theanalysis of sets through Venn diagrams.
title_fullStr InteractiVenn: a web-based tool for theanalysis of sets through Venn diagrams.
title_full_unstemmed InteractiVenn: a web-based tool for theanalysis of sets through Venn diagrams.
title_sort InteractiVenn: a web-based tool for theanalysis of sets through Venn diagrams.
author HEBERLE, H.
author_facet HEBERLE, H.
MEIRELLES, G. V.
SILVA, F. R. da
TELLES, G. P.
MINGHIM, R.
author_role author
author2 MEIRELLES, G. V.
SILVA, F. R. da
TELLES, G. P.
MINGHIM, R.
author2_role author
author
author
author
dc.contributor.none.fl_str_mv HENRY HEBERLE, ICMC/USP; GABRIELA VAZ MEIRELLES, Laboratório Nacional de Biociências, Campinas; FELIPE RODRIGUES DA SILVA, CNPTIA; GUILHERME P. TELLES, IC/Unicamp; ROSANE MINGHIM, ICMC/USP.
dc.contributor.author.fl_str_mv HEBERLE, H.
MEIRELLES, G. V.
SILVA, F. R. da
TELLES, G. P.
MINGHIM, R.
dc.subject.por.fl_str_mv Diagrama de Venn
Diagrama de Edwards-Venn
Venn diagram
Edwards-Venn diagram
Interaction
Set-unions
topic Diagrama de Venn
Diagrama de Edwards-Venn
Venn diagram
Edwards-Venn diagram
Interaction
Set-unions
description Abstract. Background: Set comparisons permeate a large number of data analysis workflows, in particular workflows in biological sciences. Venn diagrams are frequently employed for such analysis but current tools are limited. Results: We have developed InteractiVenn, a more flexible tool for interacting with Venn diagrams including up to six sets. It offers a clean interface for Venn diagram construction and enables analysis of set unions while preserving the shape of the diagram. Set unions are useful to reveal differences and similarities among sets and may be guided in our tool by a tree or by a list of set unions. The tool also allows obtaining subsets? elements, saving and loading sets for further analyses, and exporting the diagram in vector and image formats. InteractiVenn has been used to analyze two biological datasets, but it may serve set analysis in a broad range of domains. Conclusions: InteractiVenn allows set unions in Venn diagrams to be explored thoroughly, by consequence extending the ability to analyze combinations of sets with additional observations, yielded by novel interactions between joined sets. InteractiVenn is freely available online at: www.interactivenn.net.
publishDate 2015
dc.date.none.fl_str_mv 2015
2019-02-07T23:38:14Z
2019-02-07T23:38:14Z
2019-02-07
2019-12-19T11:11:11Z
dc.type.driver.fl_str_mv info:eu-repo/semantics/publishedVersion
info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv BMC Bioinformatics, v. 16, p. 1-7, 2015.
http://www.alice.cnptia.embrapa.br/alice/handle/doc/1105705
10.1186/s12859-015-0611-3
identifier_str_mv BMC Bioinformatics, v. 16, p. 1-7, 2015.
10.1186/s12859-015-0611-3
url http://www.alice.cnptia.embrapa.br/alice/handle/doc/1105705
dc.language.iso.fl_str_mv eng
language eng
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instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
instacron:EMBRAPA
instname_str Empresa Brasileira de Pesquisa Agropecuária (Embrapa)
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reponame_str Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)
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