Variation in palm tree plastidial simple sequence repeats, characterization, and potential use.
Autor(a) principal: | |
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Data de Publicação: | 2022 |
Outros Autores: | , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) |
Texto Completo: | http://www.alice.cnptia.embrapa.br/alice/handle/doc/1151186 http://dx.doi.org/10.1590/1984-70332022v22n4a36 |
Resumo: | Palm trees are the third most important botanical family for humans because of their potential use in oils, drugs, cosmetics, food, and feed. Despite their importance, little information on their genetics and molecular variations exists, and a better understanding could contribute to breeding programs. This study aimed to determine the amount, distribution, and organization of plastid simple sequence repeats (cpSSRs) and their potential use in breeding in 52 species belonging to the order Arecales. Plastid genomes were analyzed to identify cpSSRs according to their nature, position, and presence in genic or intergenic regions. Primer pairs were validated in silico for amplification and polymorphisms in these SSRs and their dissimilarities were evaluated. The results showed a high frequency of mononucleotide repeats in the intergenic regions. Approximately 76 primer pairs were generated and are suggested for further studies. The dissimilarity analysis of cpSSRs showed that mono- and trinucleotides were highly abundant in plastid SSRs. |
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Variation in palm tree plastidial simple sequence repeats, characterization, and potential use.PalmeiraArecalesPalm trees are the third most important botanical family for humans because of their potential use in oils, drugs, cosmetics, food, and feed. Despite their importance, little information on their genetics and molecular variations exists, and a better understanding could contribute to breeding programs. This study aimed to determine the amount, distribution, and organization of plastid simple sequence repeats (cpSSRs) and their potential use in breeding in 52 species belonging to the order Arecales. Plastid genomes were analyzed to identify cpSSRs according to their nature, position, and presence in genic or intergenic regions. Primer pairs were validated in silico for amplification and polymorphisms in these SSRs and their dissimilarities were evaluated. The results showed a high frequency of mononucleotide repeats in the intergenic regions. Approximately 76 primer pairs were generated and are suggested for further studies. The dissimilarity analysis of cpSSRs showed that mono- and trinucleotides were highly abundant in plastid SSRs.TATIELI SILVEIRA; KARINE ELISE JANNER DE FREITAS, UNIVERSIDADE FEDERAL DE PELOTAS; RAILSON SCHREINERT DOS SANTOS; ANTONIO COSTA DE OLIVEIRA; ROSA LIA BARBIERI, CPACT.SILVEIRA, T.FREITAS, K. E. J. deSANTOS, R. S. dosOLIVEIRA, A. C. deBARBIERI, R. L.2023-01-24T14:01:55Z2023-01-24T14:01:55Z2023-01-242022info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleCrop Breeding and Applied Biotechnology, v. 22, n. 4, e41812241, 2022.http://www.alice.cnptia.embrapa.br/alice/handle/doc/1151186http://dx.doi.org/10.1590/1984-70332022v22n4a36enginfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)instacron:EMBRAPA2023-01-24T14:01:55Zoai:www.alice.cnptia.embrapa.br:doc/1151186Repositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestopendoar:21542023-01-24T14:01:55falseRepositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestcg-riaa@embrapa.bropendoar:21542023-01-24T14:01:55Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa)false |
dc.title.none.fl_str_mv |
Variation in palm tree plastidial simple sequence repeats, characterization, and potential use. |
title |
Variation in palm tree plastidial simple sequence repeats, characterization, and potential use. |
spellingShingle |
Variation in palm tree plastidial simple sequence repeats, characterization, and potential use. SILVEIRA, T. Palmeira Arecales |
title_short |
Variation in palm tree plastidial simple sequence repeats, characterization, and potential use. |
title_full |
Variation in palm tree plastidial simple sequence repeats, characterization, and potential use. |
title_fullStr |
Variation in palm tree plastidial simple sequence repeats, characterization, and potential use. |
title_full_unstemmed |
Variation in palm tree plastidial simple sequence repeats, characterization, and potential use. |
title_sort |
Variation in palm tree plastidial simple sequence repeats, characterization, and potential use. |
author |
SILVEIRA, T. |
author_facet |
SILVEIRA, T. FREITAS, K. E. J. de SANTOS, R. S. dos OLIVEIRA, A. C. de BARBIERI, R. L. |
author_role |
author |
author2 |
FREITAS, K. E. J. de SANTOS, R. S. dos OLIVEIRA, A. C. de BARBIERI, R. L. |
author2_role |
author author author author |
dc.contributor.none.fl_str_mv |
TATIELI SILVEIRA; KARINE ELISE JANNER DE FREITAS, UNIVERSIDADE FEDERAL DE PELOTAS; RAILSON SCHREINERT DOS SANTOS; ANTONIO COSTA DE OLIVEIRA; ROSA LIA BARBIERI, CPACT. |
dc.contributor.author.fl_str_mv |
SILVEIRA, T. FREITAS, K. E. J. de SANTOS, R. S. dos OLIVEIRA, A. C. de BARBIERI, R. L. |
dc.subject.por.fl_str_mv |
Palmeira Arecales |
topic |
Palmeira Arecales |
description |
Palm trees are the third most important botanical family for humans because of their potential use in oils, drugs, cosmetics, food, and feed. Despite their importance, little information on their genetics and molecular variations exists, and a better understanding could contribute to breeding programs. This study aimed to determine the amount, distribution, and organization of plastid simple sequence repeats (cpSSRs) and their potential use in breeding in 52 species belonging to the order Arecales. Plastid genomes were analyzed to identify cpSSRs according to their nature, position, and presence in genic or intergenic regions. Primer pairs were validated in silico for amplification and polymorphisms in these SSRs and their dissimilarities were evaluated. The results showed a high frequency of mononucleotide repeats in the intergenic regions. Approximately 76 primer pairs were generated and are suggested for further studies. The dissimilarity analysis of cpSSRs showed that mono- and trinucleotides were highly abundant in plastid SSRs. |
publishDate |
2022 |
dc.date.none.fl_str_mv |
2022 2023-01-24T14:01:55Z 2023-01-24T14:01:55Z 2023-01-24 |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/publishedVersion info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
Crop Breeding and Applied Biotechnology, v. 22, n. 4, e41812241, 2022. http://www.alice.cnptia.embrapa.br/alice/handle/doc/1151186 http://dx.doi.org/10.1590/1984-70332022v22n4a36 |
identifier_str_mv |
Crop Breeding and Applied Biotechnology, v. 22, n. 4, e41812241, 2022. |
url |
http://www.alice.cnptia.embrapa.br/alice/handle/doc/1151186 http://dx.doi.org/10.1590/1984-70332022v22n4a36 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.source.none.fl_str_mv |
reponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa) instacron:EMBRAPA |
instname_str |
Empresa Brasileira de Pesquisa Agropecuária (Embrapa) |
instacron_str |
EMBRAPA |
institution |
EMBRAPA |
reponame_str |
Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) |
collection |
Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) |
repository.name.fl_str_mv |
Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa) |
repository.mail.fl_str_mv |
cg-riaa@embrapa.br |
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1794503538820251648 |