Development of microsatellite markers in Guineagrass (Panicum maximum Jacq.) and their transferability to other tropical forage grass species.
Autor(a) principal: | |
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Data de Publicação: | 2011 |
Outros Autores: | , , , , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) |
Texto Completo: | http://www.alice.cnptia.embrapa.br/alice/handle/doc/901385 |
Resumo: | The Guineagrass (Panicum maximum Jacq.) is one of the most important tropical forage grasses, but genetic knowledge and tools regarding this species are still limited. Therefore, 20 novel polymorphic microsatellite markers were developed, validated, and employed in estimating genetic relationships among 25 P. maximum genotypes selected from a Brazilian germplasm collection. In addition, they were tested for cross-species amplification in four other forage grass species. The number of alleles observed for each locus ranged from 4 to 12 (average 6.7). The values of polymorphism information content (PIC) varied from 0.41 to 0.83 (average 0.61) and the discriminating power (D) ranged from 0.53 to 0.98 (average 0.72). Cross-amplification demonstrated the potential transferability of these microsatellites to four tropical forage grass species. Cluster analysis based on the unweighted pair group method revealed three distinct groups: two clusters consisted of P. maximum genotypes and a third cluster, consisted of the other tropical forage grass species. The data demonstrated that the microsatellites developed herein have potential for germplasm characterization and genetic diversity analysis in P. maximum and other forage grass species. |
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Development of microsatellite markers in Guineagrass (Panicum maximum Jacq.) and their transferability to other tropical forage grass species.Capim TanzâniaGuineagrassMarcador microssatéliteAmplificação cruzadaRepeticiones de microsatéliteFitomejoramientoMarcadores genéticosPastos forrajerosVariación genéticaMelhoramento genético vegetalGramínea forrageiraCapim ColoniãoPanicum maximumSeleção genótipaVariação genéticaMarcador genéticoPolimorfismo genéticoGenótipoPlant breedingForage grassesMegathyrsus maximusGenotypeGenetic variationGenetic markersMicrosatellite repeatsGenetic polymorphismThe Guineagrass (Panicum maximum Jacq.) is one of the most important tropical forage grasses, but genetic knowledge and tools regarding this species are still limited. Therefore, 20 novel polymorphic microsatellite markers were developed, validated, and employed in estimating genetic relationships among 25 P. maximum genotypes selected from a Brazilian germplasm collection. In addition, they were tested for cross-species amplification in four other forage grass species. The number of alleles observed for each locus ranged from 4 to 12 (average 6.7). The values of polymorphism information content (PIC) varied from 0.41 to 0.83 (average 0.61) and the discriminating power (D) ranged from 0.53 to 0.98 (average 0.72). Cross-amplification demonstrated the potential transferability of these microsatellites to four tropical forage grass species. Cluster analysis based on the unweighted pair group method revealed three distinct groups: two clusters consisted of P. maximum genotypes and a third cluster, consisted of the other tropical forage grass species. The data demonstrated that the microsatellites developed herein have potential for germplasm characterization and genetic diversity analysis in P. maximum and other forage grass species.A. C. B. SOUZA, UNICAMP; LETICIA JUNGMANN CANCADO, CNPGC; TATIANA DE CAMPOS, CPAF-Acre; D. A. SFORÇA, UNICAMP; L. R. BOAVENTURA, UNICAMP; G. M. B. SILVA, UNICAMP; M. I. ZUCCHI, UNICAMP; LIANA JANK, CNPGC; A. P. SOUZA, UNICAMP.SOUSA, A. C. B.JUNGMANN, L.CAMPOS, T. deSFORÇA, D. A.BOAVENTURA, L. R.SILVA, G. M. B.ZUCCHI, M. I.JANK, L.SOUZA, A. P.2011-09-27T11:11:11Z2011-09-27T11:11:11Z2011-09-2720112019-01-09T11:11:11Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articlePlant Breeding, Boon, v. 130, n. 1, p. 104-108, Feb. 2011.http://www.alice.cnptia.embrapa.br/alice/handle/doc/90138510.1111/j.1439-0523.2010.01779.xenginfo:eu-repo/semantics/openAccessreponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice)instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa)instacron:EMBRAPA2017-08-16T04:24:45Zoai:www.alice.cnptia.embrapa.br:doc/901385Repositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestopendoar:21542017-08-16T04:24:45falseRepositório InstitucionalPUBhttps://www.alice.cnptia.embrapa.br/oai/requestcg-riaa@embrapa.bropendoar:21542017-08-16T04:24:45Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa)false |
dc.title.none.fl_str_mv |
Development of microsatellite markers in Guineagrass (Panicum maximum Jacq.) and their transferability to other tropical forage grass species. |
title |
Development of microsatellite markers in Guineagrass (Panicum maximum Jacq.) and their transferability to other tropical forage grass species. |
spellingShingle |
Development of microsatellite markers in Guineagrass (Panicum maximum Jacq.) and their transferability to other tropical forage grass species. SOUSA, A. C. B. Capim Tanzânia Guineagrass Marcador microssatélite Amplificação cruzada Repeticiones de microsatélite Fitomejoramiento Marcadores genéticos Pastos forrajeros Variación genética Melhoramento genético vegetal Gramínea forrageira Capim Colonião Panicum maximum Seleção genótipa Variação genética Marcador genético Polimorfismo genético Genótipo Plant breeding Forage grasses Megathyrsus maximus Genotype Genetic variation Genetic markers Microsatellite repeats Genetic polymorphism |
title_short |
Development of microsatellite markers in Guineagrass (Panicum maximum Jacq.) and their transferability to other tropical forage grass species. |
title_full |
Development of microsatellite markers in Guineagrass (Panicum maximum Jacq.) and their transferability to other tropical forage grass species. |
title_fullStr |
Development of microsatellite markers in Guineagrass (Panicum maximum Jacq.) and their transferability to other tropical forage grass species. |
title_full_unstemmed |
Development of microsatellite markers in Guineagrass (Panicum maximum Jacq.) and their transferability to other tropical forage grass species. |
title_sort |
Development of microsatellite markers in Guineagrass (Panicum maximum Jacq.) and their transferability to other tropical forage grass species. |
author |
SOUSA, A. C. B. |
author_facet |
SOUSA, A. C. B. JUNGMANN, L. CAMPOS, T. de SFORÇA, D. A. BOAVENTURA, L. R. SILVA, G. M. B. ZUCCHI, M. I. JANK, L. SOUZA, A. P. |
author_role |
author |
author2 |
JUNGMANN, L. CAMPOS, T. de SFORÇA, D. A. BOAVENTURA, L. R. SILVA, G. M. B. ZUCCHI, M. I. JANK, L. SOUZA, A. P. |
author2_role |
author author author author author author author author |
dc.contributor.none.fl_str_mv |
A. C. B. SOUZA, UNICAMP; LETICIA JUNGMANN CANCADO, CNPGC; TATIANA DE CAMPOS, CPAF-Acre; D. A. SFORÇA, UNICAMP; L. R. BOAVENTURA, UNICAMP; G. M. B. SILVA, UNICAMP; M. I. ZUCCHI, UNICAMP; LIANA JANK, CNPGC; A. P. SOUZA, UNICAMP. |
dc.contributor.author.fl_str_mv |
SOUSA, A. C. B. JUNGMANN, L. CAMPOS, T. de SFORÇA, D. A. BOAVENTURA, L. R. SILVA, G. M. B. ZUCCHI, M. I. JANK, L. SOUZA, A. P. |
dc.subject.por.fl_str_mv |
Capim Tanzânia Guineagrass Marcador microssatélite Amplificação cruzada Repeticiones de microsatélite Fitomejoramiento Marcadores genéticos Pastos forrajeros Variación genética Melhoramento genético vegetal Gramínea forrageira Capim Colonião Panicum maximum Seleção genótipa Variação genética Marcador genético Polimorfismo genético Genótipo Plant breeding Forage grasses Megathyrsus maximus Genotype Genetic variation Genetic markers Microsatellite repeats Genetic polymorphism |
topic |
Capim Tanzânia Guineagrass Marcador microssatélite Amplificação cruzada Repeticiones de microsatélite Fitomejoramiento Marcadores genéticos Pastos forrajeros Variación genética Melhoramento genético vegetal Gramínea forrageira Capim Colonião Panicum maximum Seleção genótipa Variação genética Marcador genético Polimorfismo genético Genótipo Plant breeding Forage grasses Megathyrsus maximus Genotype Genetic variation Genetic markers Microsatellite repeats Genetic polymorphism |
description |
The Guineagrass (Panicum maximum Jacq.) is one of the most important tropical forage grasses, but genetic knowledge and tools regarding this species are still limited. Therefore, 20 novel polymorphic microsatellite markers were developed, validated, and employed in estimating genetic relationships among 25 P. maximum genotypes selected from a Brazilian germplasm collection. In addition, they were tested for cross-species amplification in four other forage grass species. The number of alleles observed for each locus ranged from 4 to 12 (average 6.7). The values of polymorphism information content (PIC) varied from 0.41 to 0.83 (average 0.61) and the discriminating power (D) ranged from 0.53 to 0.98 (average 0.72). Cross-amplification demonstrated the potential transferability of these microsatellites to four tropical forage grass species. Cluster analysis based on the unweighted pair group method revealed three distinct groups: two clusters consisted of P. maximum genotypes and a third cluster, consisted of the other tropical forage grass species. The data demonstrated that the microsatellites developed herein have potential for germplasm characterization and genetic diversity analysis in P. maximum and other forage grass species. |
publishDate |
2011 |
dc.date.none.fl_str_mv |
2011-09-27T11:11:11Z 2011-09-27T11:11:11Z 2011-09-27 2011 2019-01-09T11:11:11Z |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/publishedVersion info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
Plant Breeding, Boon, v. 130, n. 1, p. 104-108, Feb. 2011. http://www.alice.cnptia.embrapa.br/alice/handle/doc/901385 10.1111/j.1439-0523.2010.01779.x |
identifier_str_mv |
Plant Breeding, Boon, v. 130, n. 1, p. 104-108, Feb. 2011. 10.1111/j.1439-0523.2010.01779.x |
url |
http://www.alice.cnptia.embrapa.br/alice/handle/doc/901385 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.source.none.fl_str_mv |
reponame:Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) instname:Empresa Brasileira de Pesquisa Agropecuária (Embrapa) instacron:EMBRAPA |
instname_str |
Empresa Brasileira de Pesquisa Agropecuária (Embrapa) |
instacron_str |
EMBRAPA |
institution |
EMBRAPA |
reponame_str |
Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) |
collection |
Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) |
repository.name.fl_str_mv |
Repositório Institucional da EMBRAPA (Repository Open Access to Scientific Information from EMBRAPA - Alice) - Empresa Brasileira de Pesquisa Agropecuária (Embrapa) |
repository.mail.fl_str_mv |
cg-riaa@embrapa.br |
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1794503436026249216 |