Associative bacterial diversity of pangolão, a stressresilient tropical grass
Autor(a) principal: | |
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Data de Publicação: | 2022 |
Outros Autores: | , , , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Bragantia |
Texto Completo: | http://old.scielo.br/scielo.php?script=sci_arttext&pid=S0006-87052022000100245 |
Resumo: | ABSTRACT Some forage species, such as pangolão grass (Digitaria eriantha Steud. cv. Survenola), are resilient in tropical semi arid regions. A possible reason for this is the presence of endophytic and rhizospheric microorganisms. Thus, this study evaluated the diversity of associative bacteria in pangolão grass. Bacteria associated with the roots, culm, leaves, and rhizospheric soil were isolated and characterized in three municipalities of Pernambuco, Brazil. An initial phenotypic characterization was followed by a genotypic assessment by based repetitive extragenic palindromic-polymerase chain reaction (BOX-PCR) and partial sequencing of the 16S rRNA gene. We obtained 325 phenotypically-characterized isolates grouped into 243 strains with 100% similarity by BOX-PCR. The most diverse sampling environment was Araripina, and all factors affected bacterial diversity. There were 135 groups with 90% similarity, that were represented by a single strain each for sequencing. Among the sequenced strains, 118 showed 96.84–99.9% similarity with previously described strains, whereas 17 could not be identified. The following 18 genera were identified from three phyla, five classes, seven orders, and 13 families: Achromobacter, Agrobacterium, Bacillus, Burkholderia, Curtobacterium, Enterobacter, Herbaspirillum, Kosakonia, Ochrobactrum, Paenibacillus, Pantoea, Priestia, Pseudomonas, Rhizobium, Serratia, Shinella, Stenotrophomonas, and Variovorax. The diversity of endophytic and rhizospheric bacteria may contribute to the resilience of pangolão, as various strains of these genera have been described as plant growth promoters. This is the first evaluation of pangolão bacterial diversity under tropical semi arid conditions. Since several of the genera include strains known to promote plant growth, we propose further research to evaluate this on crops. |
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Associative bacterial diversity of pangolão, a stressresilient tropical grassendophytic bacteriarhizospheric bacteriaenvironmental stresssemiaridDigitaria eriantha Steud. cv. SurvenolaABSTRACT Some forage species, such as pangolão grass (Digitaria eriantha Steud. cv. Survenola), are resilient in tropical semi arid regions. A possible reason for this is the presence of endophytic and rhizospheric microorganisms. Thus, this study evaluated the diversity of associative bacteria in pangolão grass. Bacteria associated with the roots, culm, leaves, and rhizospheric soil were isolated and characterized in three municipalities of Pernambuco, Brazil. An initial phenotypic characterization was followed by a genotypic assessment by based repetitive extragenic palindromic-polymerase chain reaction (BOX-PCR) and partial sequencing of the 16S rRNA gene. We obtained 325 phenotypically-characterized isolates grouped into 243 strains with 100% similarity by BOX-PCR. The most diverse sampling environment was Araripina, and all factors affected bacterial diversity. There were 135 groups with 90% similarity, that were represented by a single strain each for sequencing. Among the sequenced strains, 118 showed 96.84–99.9% similarity with previously described strains, whereas 17 could not be identified. The following 18 genera were identified from three phyla, five classes, seven orders, and 13 families: Achromobacter, Agrobacterium, Bacillus, Burkholderia, Curtobacterium, Enterobacter, Herbaspirillum, Kosakonia, Ochrobactrum, Paenibacillus, Pantoea, Priestia, Pseudomonas, Rhizobium, Serratia, Shinella, Stenotrophomonas, and Variovorax. The diversity of endophytic and rhizospheric bacteria may contribute to the resilience of pangolão, as various strains of these genera have been described as plant growth promoters. This is the first evaluation of pangolão bacterial diversity under tropical semi arid conditions. Since several of the genera include strains known to promote plant growth, we propose further research to evaluate this on crops.Instituto Agronômico de Campinas2022-01-01info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersiontext/htmlhttp://old.scielo.br/scielo.php?script=sci_arttext&pid=S0006-87052022000100245Bragantia v.81 2022reponame:Bragantiainstname:Instituto Agronômico de Campinas (IAC)instacron:IAC10.1590/1678-4499.20220071info:eu-repo/semantics/openAccessAlves,Michelle Justino GomesOliveira,Cybelle SouzaVitalino,Gisely MoreiraCarvalho,Eric Xavier deOliveira,José de PaulaFracetto,Giselle Gomes MonteiroFracetto,Felipe José CuryLira Junior,Mario Andradeeng2022-12-15T00:00:00Zoai:scielo:S0006-87052022000100245Revistahttps://www.scielo.br/j/brag/https://old.scielo.br/oai/scielo-oai.phpbragantia@iac.sp.gov.br||bragantia@iac.sp.gov.br1678-44990006-8705opendoar:2022-12-15T00:00Bragantia - Instituto Agronômico de Campinas (IAC)false |
dc.title.none.fl_str_mv |
Associative bacterial diversity of pangolão, a stressresilient tropical grass |
title |
Associative bacterial diversity of pangolão, a stressresilient tropical grass |
spellingShingle |
Associative bacterial diversity of pangolão, a stressresilient tropical grass Alves,Michelle Justino Gomes endophytic bacteria rhizospheric bacteria environmental stress semiarid Digitaria eriantha Steud. cv. Survenola |
title_short |
Associative bacterial diversity of pangolão, a stressresilient tropical grass |
title_full |
Associative bacterial diversity of pangolão, a stressresilient tropical grass |
title_fullStr |
Associative bacterial diversity of pangolão, a stressresilient tropical grass |
title_full_unstemmed |
Associative bacterial diversity of pangolão, a stressresilient tropical grass |
title_sort |
Associative bacterial diversity of pangolão, a stressresilient tropical grass |
author |
Alves,Michelle Justino Gomes |
author_facet |
Alves,Michelle Justino Gomes Oliveira,Cybelle Souza Vitalino,Gisely Moreira Carvalho,Eric Xavier de Oliveira,José de Paula Fracetto,Giselle Gomes Monteiro Fracetto,Felipe José Cury Lira Junior,Mario Andrade |
author_role |
author |
author2 |
Oliveira,Cybelle Souza Vitalino,Gisely Moreira Carvalho,Eric Xavier de Oliveira,José de Paula Fracetto,Giselle Gomes Monteiro Fracetto,Felipe José Cury Lira Junior,Mario Andrade |
author2_role |
author author author author author author author |
dc.contributor.author.fl_str_mv |
Alves,Michelle Justino Gomes Oliveira,Cybelle Souza Vitalino,Gisely Moreira Carvalho,Eric Xavier de Oliveira,José de Paula Fracetto,Giselle Gomes Monteiro Fracetto,Felipe José Cury Lira Junior,Mario Andrade |
dc.subject.por.fl_str_mv |
endophytic bacteria rhizospheric bacteria environmental stress semiarid Digitaria eriantha Steud. cv. Survenola |
topic |
endophytic bacteria rhizospheric bacteria environmental stress semiarid Digitaria eriantha Steud. cv. Survenola |
description |
ABSTRACT Some forage species, such as pangolão grass (Digitaria eriantha Steud. cv. Survenola), are resilient in tropical semi arid regions. A possible reason for this is the presence of endophytic and rhizospheric microorganisms. Thus, this study evaluated the diversity of associative bacteria in pangolão grass. Bacteria associated with the roots, culm, leaves, and rhizospheric soil were isolated and characterized in three municipalities of Pernambuco, Brazil. An initial phenotypic characterization was followed by a genotypic assessment by based repetitive extragenic palindromic-polymerase chain reaction (BOX-PCR) and partial sequencing of the 16S rRNA gene. We obtained 325 phenotypically-characterized isolates grouped into 243 strains with 100% similarity by BOX-PCR. The most diverse sampling environment was Araripina, and all factors affected bacterial diversity. There were 135 groups with 90% similarity, that were represented by a single strain each for sequencing. Among the sequenced strains, 118 showed 96.84–99.9% similarity with previously described strains, whereas 17 could not be identified. The following 18 genera were identified from three phyla, five classes, seven orders, and 13 families: Achromobacter, Agrobacterium, Bacillus, Burkholderia, Curtobacterium, Enterobacter, Herbaspirillum, Kosakonia, Ochrobactrum, Paenibacillus, Pantoea, Priestia, Pseudomonas, Rhizobium, Serratia, Shinella, Stenotrophomonas, and Variovorax. The diversity of endophytic and rhizospheric bacteria may contribute to the resilience of pangolão, as various strains of these genera have been described as plant growth promoters. This is the first evaluation of pangolão bacterial diversity under tropical semi arid conditions. Since several of the genera include strains known to promote plant growth, we propose further research to evaluate this on crops. |
publishDate |
2022 |
dc.date.none.fl_str_mv |
2022-01-01 |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://old.scielo.br/scielo.php?script=sci_arttext&pid=S0006-87052022000100245 |
url |
http://old.scielo.br/scielo.php?script=sci_arttext&pid=S0006-87052022000100245 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
10.1590/1678-4499.20220071 |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
text/html |
dc.publisher.none.fl_str_mv |
Instituto Agronômico de Campinas |
publisher.none.fl_str_mv |
Instituto Agronômico de Campinas |
dc.source.none.fl_str_mv |
Bragantia v.81 2022 reponame:Bragantia instname:Instituto Agronômico de Campinas (IAC) instacron:IAC |
instname_str |
Instituto Agronômico de Campinas (IAC) |
instacron_str |
IAC |
institution |
IAC |
reponame_str |
Bragantia |
collection |
Bragantia |
repository.name.fl_str_mv |
Bragantia - Instituto Agronômico de Campinas (IAC) |
repository.mail.fl_str_mv |
bragantia@iac.sp.gov.br||bragantia@iac.sp.gov.br |
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1754193308471525376 |