Whole-genome sequencing of parvoviruses from wild and domestic animals in Brazil provides new insights into parvovirus distribution and diversity

Detalhes bibliográficos
Autor(a) principal: Souza, William Marciel de
Data de Publicação: 2018
Outros Autores: Dennis, Tristan Philip Wesley, Fumagalli, Marcílio Jorge, Araujo, Jansen de, Santos Jr, Gilberto Sabino, Maia, Felipe Gonçalves Motta, Acrani, Gustavo Olszanski, Carrasco, Adriano de Oliveira Torres, Romeiro, Marilia Farignoli, Modha, Sejal, Vieira, Luiz Carlos, Ometto, Tatiana Lopes, Queiroz, Luzia Helena, Durigon, Edison Luiz, Nunes, Márcio Roberto Teixeira, Figueiredo, Luiz Tadeu Moraes, Gifford, Robert James
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Digital do Instituto Evandro Chagas (Patuá)
Texto Completo: https://patua.iec.gov.br/handle/iec/3866
Resumo: Parvoviruses (family Parvoviridae) are small, single-stranded DNA viruses. Many parvoviral pathogens of medical, veterinary and ecological importance have been identified. In this study, we used high-throughput sequencing (HTS) to investigate the diversity of parvoviruses infecting wild and domestic animals in Brazil. We identified 21 parvovirus sequences (including twelve nearly complete genomes and nine partial genomes) in samples derived from rodents, bats, opossums, birds and cattle in Pernambuco, São Paulo, Paraná and Rio Grande do Sul states. These sequences were investigated using phylogenetic and distance-based approaches, and were thereby classified into eight parvovirus species (six of which have not been described previously), representing six distinct genera in the subfamily Parvovirinae. Our findings extend the known biogeographic range of previously characterized parvovirus species, and the known host range of three parvovirus genera (Dependovirus, Aveparvovirus, and Tetraparvovirus). Moreover, our investigation provides a window into the ecological dynamics of parvovirus infections in vertebrates, revealing that many parvovirus genera contain well-defined sub-lineages that circulate widely throughout the world within particular taxonomic groups of hosts.
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spelling Souza, William Marciel deDennis, Tristan Philip WesleyFumagalli, Marcílio JorgeAraujo, Jansen deSantos Jr, Gilberto SabinoMaia, Felipe Gonçalves MottaAcrani, Gustavo OlszanskiCarrasco, Adriano de Oliveira TorresRomeiro, Marilia FarignoliModha, SejalVieira, Luiz CarlosOmetto, Tatiana LopesQueiroz, Luzia HelenaDurigon, Edison LuizNunes, Márcio Roberto TeixeiraFigueiredo, Luiz Tadeu MoraesGifford, Robert James2019-08-28T17:47:51Z2019-08-28T17:47:51Z2018SOUZA, William Marciel de et al. Whole-genome sequencing of parvoviruses from wild and domestic animals in Brazil provides new insights into parvovirus distribution and diversity. Viruses, v. 10, n. 10, p. 1-10, Mar. 2018. DOI: https://doi.org/10.3390/v10040143. Disponível em: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5923437/pdf/viruses-10-00143.pdf.1999-4915https://patua.iec.gov.br/handle/iec/386610.3390/v10040143Parvoviruses (family Parvoviridae) are small, single-stranded DNA viruses. Many parvoviral pathogens of medical, veterinary and ecological importance have been identified. In this study, we used high-throughput sequencing (HTS) to investigate the diversity of parvoviruses infecting wild and domestic animals in Brazil. We identified 21 parvovirus sequences (including twelve nearly complete genomes and nine partial genomes) in samples derived from rodents, bats, opossums, birds and cattle in Pernambuco, São Paulo, Paraná and Rio Grande do Sul states. These sequences were investigated using phylogenetic and distance-based approaches, and were thereby classified into eight parvovirus species (six of which have not been described previously), representing six distinct genera in the subfamily Parvovirinae. Our findings extend the known biogeographic range of previously characterized parvovirus species, and the known host range of three parvovirus genera (Dependovirus, Aveparvovirus, and Tetraparvovirus). Moreover, our investigation provides a window into the ecological dynamics of parvovirus infections in vertebrates, revealing that many parvovirus genera contain well-defined sub-lineages that circulate widely throughout the world within particular taxonomic groups of hosts.This work was supported by the Fundação de Amparo à Pesquisa do Estado de São Paulo, Brazil (Grant number. 13/14929-1, and Scholarships No. 17/13981-0; 12/24150-9; 15/05778-5; 16/01414-1; 14/20851-8; 06/00572-0; 08/06411-4; 11/06810-9; 11/22663-6; 16/02568-2, 06/00572-0; 09/05994-9 and 11/13821-7). RJG was supported by the Medical Research Council of the United Kingdom (Grant number MC_UU_12014/10).University of São Paulo. Ribeirão Preto Medical School. Virology Research Center. Ribeirão Preto, SP, Brazil.MRC-University of Glasgow Centre for Virus Research. Glasgow, United Kingdom.University of São Paulo. Ribeirão Preto Medical School. Virology Research Center. Ribeirão Preto, SP, Brazil.University of São Paulo. Institute of Biomedical Sciences. São Paulo, SP, Brazil.University of São Paulo. Ribeirão Preto Medical School. Virology Research Center. Ribeirão Preto, SP, Brazil.University of São Paulo. Ribeirão Preto Medical School. Virology Research Center. Ribeirão Preto, SP, Brazil / University of São Paulo. Institute of Biomedical Sciences. São Paulo, SP, Brazil.Universidade Federal da Fronteira Sul. Passo Fundo, RS, Brazil.Universidade do Centro Oeste do Paraná. Guarapuava, PR, Brazil.University of São Paulo. Ribeirão Preto Medical School. Virology Research Center. Ribeirão Preto, SP, Brazil.MRC-University of Glasgow Centre for Virus Research. Glasgow, United Kingdom.University of São Paulo. Ribeirão Preto Medical School. Virology Research Center. Ribeirão Preto, SP, Brazil.University of São Paulo. Institute of Biomedical Sciences. São Paulo, SP, Brazil.São Paulo State University. Faculty of Veterinary Medicine. Araçatuba, SP, Brazil.University of São Paulo. Institute of Biomedical Sciences. São Paulo, SP, Brazil.Ministério da Saúde. Secretaria de Vigilância em Saúde. Instituto Evandro Chagas. Ananindeua, PA, Brasil.University of São Paulo. Ribeirão Preto Medical School. Virology Research Center. Ribeirão Preto, SP, Brazil.MRC-University of Glasgow Centre for Virus Research. Glasgow, United Kingdom.engCold Spring Harbor LaboratoryWhole-genome sequencing of parvoviruses from wild and domestic animals in Brazil provides new insights into parvovirus distribution and diversityinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleParvovirus / patogenicidadeInfecções por Parvoviridae / veterináriaAnimais Selvagens / virologiaAnimais Domésticos / virologiaGenoma Viral / genéticainfo:eu-repo/semantics/openAccessreponame:Repositório Digital do Instituto Evandro Chagas (Patuá)instname:Instituto Evandro Chagas (IEC)instacron:IECORIGINALWhole-genome sequencing of parvoviruses from wild and domestic animals in Brazil provides new insights into parvovirus distribution and diversity.pdfWhole-genome sequencing of parvoviruses from wild and domestic animals in Brazil provides new insights into parvovirus distribution and diversity.pdfapplication/pdf584485https://patua.iec.gov.br/bitstreams/9023d068-922e-4fe6-84e6-c3bc231011da/download7fd42fc3b39937c9bb2505da4bfecb1dMD51LICENSElicense.txtlicense.txttext/plain; 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dc.title.pt_BR.fl_str_mv Whole-genome sequencing of parvoviruses from wild and domestic animals in Brazil provides new insights into parvovirus distribution and diversity
title Whole-genome sequencing of parvoviruses from wild and domestic animals in Brazil provides new insights into parvovirus distribution and diversity
spellingShingle Whole-genome sequencing of parvoviruses from wild and domestic animals in Brazil provides new insights into parvovirus distribution and diversity
Souza, William Marciel de
Parvovirus / patogenicidade
Infecções por Parvoviridae / veterinária
Animais Selvagens / virologia
Animais Domésticos / virologia
Genoma Viral / genética
title_short Whole-genome sequencing of parvoviruses from wild and domestic animals in Brazil provides new insights into parvovirus distribution and diversity
title_full Whole-genome sequencing of parvoviruses from wild and domestic animals in Brazil provides new insights into parvovirus distribution and diversity
title_fullStr Whole-genome sequencing of parvoviruses from wild and domestic animals in Brazil provides new insights into parvovirus distribution and diversity
title_full_unstemmed Whole-genome sequencing of parvoviruses from wild and domestic animals in Brazil provides new insights into parvovirus distribution and diversity
title_sort Whole-genome sequencing of parvoviruses from wild and domestic animals in Brazil provides new insights into parvovirus distribution and diversity
author Souza, William Marciel de
author_facet Souza, William Marciel de
Dennis, Tristan Philip Wesley
Fumagalli, Marcílio Jorge
Araujo, Jansen de
Santos Jr, Gilberto Sabino
Maia, Felipe Gonçalves Motta
Acrani, Gustavo Olszanski
Carrasco, Adriano de Oliveira Torres
Romeiro, Marilia Farignoli
Modha, Sejal
Vieira, Luiz Carlos
Ometto, Tatiana Lopes
Queiroz, Luzia Helena
Durigon, Edison Luiz
Nunes, Márcio Roberto Teixeira
Figueiredo, Luiz Tadeu Moraes
Gifford, Robert James
author_role author
author2 Dennis, Tristan Philip Wesley
Fumagalli, Marcílio Jorge
Araujo, Jansen de
Santos Jr, Gilberto Sabino
Maia, Felipe Gonçalves Motta
Acrani, Gustavo Olszanski
Carrasco, Adriano de Oliveira Torres
Romeiro, Marilia Farignoli
Modha, Sejal
Vieira, Luiz Carlos
Ometto, Tatiana Lopes
Queiroz, Luzia Helena
Durigon, Edison Luiz
Nunes, Márcio Roberto Teixeira
Figueiredo, Luiz Tadeu Moraes
Gifford, Robert James
author2_role author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
dc.contributor.author.fl_str_mv Souza, William Marciel de
Dennis, Tristan Philip Wesley
Fumagalli, Marcílio Jorge
Araujo, Jansen de
Santos Jr, Gilberto Sabino
Maia, Felipe Gonçalves Motta
Acrani, Gustavo Olszanski
Carrasco, Adriano de Oliveira Torres
Romeiro, Marilia Farignoli
Modha, Sejal
Vieira, Luiz Carlos
Ometto, Tatiana Lopes
Queiroz, Luzia Helena
Durigon, Edison Luiz
Nunes, Márcio Roberto Teixeira
Figueiredo, Luiz Tadeu Moraes
Gifford, Robert James
dc.subject.decsPrimary.pt_BR.fl_str_mv Parvovirus / patogenicidade
Infecções por Parvoviridae / veterinária
Animais Selvagens / virologia
Animais Domésticos / virologia
Genoma Viral / genética
topic Parvovirus / patogenicidade
Infecções por Parvoviridae / veterinária
Animais Selvagens / virologia
Animais Domésticos / virologia
Genoma Viral / genética
description Parvoviruses (family Parvoviridae) are small, single-stranded DNA viruses. Many parvoviral pathogens of medical, veterinary and ecological importance have been identified. In this study, we used high-throughput sequencing (HTS) to investigate the diversity of parvoviruses infecting wild and domestic animals in Brazil. We identified 21 parvovirus sequences (including twelve nearly complete genomes and nine partial genomes) in samples derived from rodents, bats, opossums, birds and cattle in Pernambuco, São Paulo, Paraná and Rio Grande do Sul states. These sequences were investigated using phylogenetic and distance-based approaches, and were thereby classified into eight parvovirus species (six of which have not been described previously), representing six distinct genera in the subfamily Parvovirinae. Our findings extend the known biogeographic range of previously characterized parvovirus species, and the known host range of three parvovirus genera (Dependovirus, Aveparvovirus, and Tetraparvovirus). Moreover, our investigation provides a window into the ecological dynamics of parvovirus infections in vertebrates, revealing that many parvovirus genera contain well-defined sub-lineages that circulate widely throughout the world within particular taxonomic groups of hosts.
publishDate 2018
dc.date.issued.fl_str_mv 2018
dc.date.accessioned.fl_str_mv 2019-08-28T17:47:51Z
dc.date.available.fl_str_mv 2019-08-28T17:47:51Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
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dc.identifier.citation.fl_str_mv SOUZA, William Marciel de et al. Whole-genome sequencing of parvoviruses from wild and domestic animals in Brazil provides new insights into parvovirus distribution and diversity. Viruses, v. 10, n. 10, p. 1-10, Mar. 2018. DOI: https://doi.org/10.3390/v10040143. Disponível em: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5923437/pdf/viruses-10-00143.pdf.
dc.identifier.uri.fl_str_mv https://patua.iec.gov.br/handle/iec/3866
dc.identifier.issn.-.fl_str_mv 1999-4915
dc.identifier.doi.pt_BR.fl_str_mv 10.3390/v10040143
identifier_str_mv SOUZA, William Marciel de et al. Whole-genome sequencing of parvoviruses from wild and domestic animals in Brazil provides new insights into parvovirus distribution and diversity. Viruses, v. 10, n. 10, p. 1-10, Mar. 2018. DOI: https://doi.org/10.3390/v10040143. Disponível em: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5923437/pdf/viruses-10-00143.pdf.
1999-4915
10.3390/v10040143
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