Recurrent chromosome reshuffling and the evolution of neo-sex chromosomes in parrots

Detalhes bibliográficos
Autor(a) principal: Huang, Zhen
Data de Publicação: 2022
Outros Autores: Furo, Ivanete de Oliveira, Liu, Jing, Peona, Valentina, Gomes, Anderson J. B, Cen, Wan, Huang, Hao, Zhang, Yanding, Chen, Duo, Xue, Ting, Zhang, Qiujin, Yue, Zhicao, Wang, Quanxi, Yu, Lingyu, Chen, Youling, Suh, Alexander, Oliveira, Edivaldo Herculano Corrêa de, Xu, Luohao
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Digital do Instituto Evandro Chagas (Patuá)
Texto Completo: https://patua.iec.gov.br/handle/iec/4523
Resumo: The karyotype of most birds has remained considerably stable during more than 100 million years’ evolution, except for some groups, such as parrots. The evolutionary processes and underlying genetic mechanism of chromosomal rearrangements in parrots, however, are poorly understood. Here, using chromosome-level assemblies of four parrot genomes, we uncover frequent chromosome fusions and fissions, with most of them occurring independently among lineages. The increased activities of chromosomal rearrangements in parrots are likely associated with parrot-specific loss of two genes, ALC1 and PARP3, that have known functions in the repair of double-strand breaks and maintenance of genome stability. We further find that the fusion of the ZW sex chromosomes and chromosome 11 has created a pair of neo-sex chromosomes in the ancestor of parrots, and the chromosome 25 has been further added to the sex chromosomes in monk parakeet. Together, the combination of our genomic and cytogenetic analyses characterizes the complex evolutionary history of chromosomal rearrangements and sex chromosomes in parrots.
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spelling Huang, ZhenFuro, Ivanete de OliveiraLiu, JingPeona, ValentinaGomes, Anderson J. BCen, WanHuang, HaoZhang, YandingChen, DuoXue, TingZhang, QiujinYue, ZhicaoWang, QuanxiYu, LingyuChen, YoulingSuh, AlexanderOliveira, Edivaldo Herculano Corrêa deXu, Luohao2022-05-30T19:19:43Z2022-05-30T19:19:43Z2022HUANG, Zhen et al. Recurrent chromosome reshuffling and the evolution of neo-sex chromosomes in parrots. Nature Communications, v. 13, n. 1, p. 1-11, Feb. 2022.2041-1723https://patua.iec.gov.br/handle/iec/452310.1038/s41467-022-28585-1The karyotype of most birds has remained considerably stable during more than 100 million years’ evolution, except for some groups, such as parrots. The evolutionary processes and underlying genetic mechanism of chromosomal rearrangements in parrots, however, are poorly understood. Here, using chromosome-level assemblies of four parrot genomes, we uncover frequent chromosome fusions and fissions, with most of them occurring independently among lineages. The increased activities of chromosomal rearrangements in parrots are likely associated with parrot-specific loss of two genes, ALC1 and PARP3, that have known functions in the repair of double-strand breaks and maintenance of genome stability. We further find that the fusion of the ZW sex chromosomes and chromosome 11 has created a pair of neo-sex chromosomes in the ancestor of parrots, and the chromosome 25 has been further added to the sex chromosomes in monk parakeet. Together, the combination of our genomic and cytogenetic analyses characterizes the complex evolutionary history of chromosomal rearrangements and sex chromosomes in parrots.Fujian Normal University. College of Life Sciences. Fujian Key Laboratory of Developmental and Neural Biology & Southern Center for Biomedical Research. Fuzhou, Fujian, ChinaUniversidade Federal Rural da Amazônia. Laboratório de Reprodução Animal. Parauapebas, PA, Brazil / Ministério da Saúde. Secretaria de Vigilância em Saúde. Instituto Evandro Chagas. Laboratório de Citogenômica e Mutagênese Ambiental. Ananindeua, PA, BrasilUniversity of Vienna. Department of Neurosciences and Developmental Biology. Vienna, AustriaUppsala University. Science for Life Laboratories. Systematic Biology. Department of Organismal Biology. Uppsala, Sweden.Instituto Federal do Pará. Abaetetuba, PA, BrazilFujian Key Laboratory of Special Marine Bio-resources Sustainable Utilization. Fuzhou, Fujian, ChinaFujian Normal University. College of Life Sciences. Fujian Key Laboratory of Developmental and Neural Biology & Southern Center for Biomedical Research. Fuzhou, Fujian, ChinaFujian Normal University. College of Life Sciences. Fujian Key Laboratory of Developmental and Neural Biology & Southern Center for Biomedical Research. Fuzhou, Fujian, ChinaFujian Key Laboratory of Special Marine Bio-resources Sustainable Utilization. Fuzhou, Fujian, ChinaFujian Key Laboratory of Special Marine Bio-resources Sustainable Utilization. Fuzhou, Fujian, ChinaFujian Normal University. College of Life Sciences. Fujian Key Laboratory of Developmental and Neural Biology & Southern Center for Biomedical Research. Fuzhou, Fujian, ChinaShenzhen University School of Medicine. Department of Cell Biology and Medical Genetics. International Cancer Center. Guangdong Key Laboratory for Genome Stability and Disease Prevention. Guangdong, China.Fujian Agriculture and Forestry University. Fujian Key Laboratory of Traditional Chinese Veterinary Medicine and Animal Health. Fuzhou, Fujian, ChinaAnnoroad Gene Technology Co, Ltd. Beijing, ChinaFujian Normal University. College of Life Sciences. Fujian Key Laboratory of Developmental and Neural Biology & Southern Center for Biomedical Research. Fuzhou, Fujian, ChinaUppsala University. Science for Life Laboratories. Department of Organismal Biology, Systematic Biology. Uppsala, Sweden / University of East Anglia. School of Biological Sciences. Organisms and the Environment. Norwich, UKUniversidade Federal do Pará. Programa de Pós-graduação em Genética e Biologia Molecular. Belém, PA, Brazil / Ministério da Saúde. Secretaria de Vigilância em Saúde. Instituto Evandro Chagas. Laboratório de Cultura de Tecidos e Citogenética. Ananindeua, PA, Brasil / Universidade Federal do Pará. Instituto de Ciências Exatas e Naturais. Belém, PA, BrazilUniversity of Vienna. Department of Neurosciences and Developmental Biology. Vienna, Austria / Southwest University. School of Life Sciences. Key Laboratory of Aquatic Science of Chongqing. Key Laboratory of Freshwater Fish Reproduction and Development. Chongqing, ChinaengNature ResearchRecurrent chromosome reshuffling and the evolution of neo-sex chromosomes in parrotsinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articlePapagaios / genéticaColoração Cromossômica / veterináriaCariótipoCariotipagem / veterináriaCromossomos Sexuais / genéticainfo:eu-repo/semantics/openAccessreponame:Repositório Digital do Instituto Evandro Chagas (Patuá)instname:Instituto Evandro Chagas (IEC)instacron:IECORIGINALRecurrent chromosome reshuffling and the evolution of neo-sex chromosomes in parrots.pdfRecurrent chromosome reshuffling and the evolution of neo-sex chromosomes in parrots.pdfapplication/pdf1565562https://patua.iec.gov.br/bitstreams/df983933-cc80-4957-a014-a43908d98ffd/download76b309f92ca5ccdd65c894f5e86e3453MD51LICENSElicense.txtlicense.txttext/plain; charset=utf-82182https://patua.iec.gov.br/bitstreams/9f37c304-46f3-4245-8cba-61a6a85f10e3/download11832eea31b16df8613079d742d61793MD52TEXTRecurrent chromosome reshuffling and the evolution of neo-sex chromosomes in parrots.pdf.txtRecurrent chromosome reshuffling and the evolution of neo-sex chromosomes in parrots.pdf.txtExtracted texttext/plain79331https://patua.iec.gov.br/bitstreams/774a3761-3c8b-4b8c-9c37-71dce5761348/download53bf47456030fc21bea1ce2a2a5fb25fMD55THUMBNAILRecurrent chromosome reshuffling and the evolution of neo-sex chromosomes in parrots.pdf.jpgRecurrent chromosome reshuffling and the evolution of neo-sex chromosomes in parrots.pdf.jpgGenerated Thumbnailimage/jpeg5097https://patua.iec.gov.br/bitstreams/342ebcaf-c17b-4fdc-a8e6-64b797f6d2ad/downloada43040233a742ae2eb76d5140d1b1c50MD56iec/45232022-10-20 21:05:50.804oai:patua.iec.gov.br:iec/4523https://patua.iec.gov.brRepositório InstitucionalPUBhttps://patua.iec.gov.br/oai/requestclariceneta@iec.gov.br || Biblioteca@iec.gov.bropendoar:2022-10-20T21:05:50Repositório Digital do Instituto Evandro Chagas (Patuá) - Instituto Evandro Chagas (IEC)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
dc.title.pt_BR.fl_str_mv Recurrent chromosome reshuffling and the evolution of neo-sex chromosomes in parrots
title Recurrent chromosome reshuffling and the evolution of neo-sex chromosomes in parrots
spellingShingle Recurrent chromosome reshuffling and the evolution of neo-sex chromosomes in parrots
Huang, Zhen
Papagaios / genética
Coloração Cromossômica / veterinária
Cariótipo
Cariotipagem / veterinária
Cromossomos Sexuais / genética
title_short Recurrent chromosome reshuffling and the evolution of neo-sex chromosomes in parrots
title_full Recurrent chromosome reshuffling and the evolution of neo-sex chromosomes in parrots
title_fullStr Recurrent chromosome reshuffling and the evolution of neo-sex chromosomes in parrots
title_full_unstemmed Recurrent chromosome reshuffling and the evolution of neo-sex chromosomes in parrots
title_sort Recurrent chromosome reshuffling and the evolution of neo-sex chromosomes in parrots
author Huang, Zhen
author_facet Huang, Zhen
Furo, Ivanete de Oliveira
Liu, Jing
Peona, Valentina
Gomes, Anderson J. B
Cen, Wan
Huang, Hao
Zhang, Yanding
Chen, Duo
Xue, Ting
Zhang, Qiujin
Yue, Zhicao
Wang, Quanxi
Yu, Lingyu
Chen, Youling
Suh, Alexander
Oliveira, Edivaldo Herculano Corrêa de
Xu, Luohao
author_role author
author2 Furo, Ivanete de Oliveira
Liu, Jing
Peona, Valentina
Gomes, Anderson J. B
Cen, Wan
Huang, Hao
Zhang, Yanding
Chen, Duo
Xue, Ting
Zhang, Qiujin
Yue, Zhicao
Wang, Quanxi
Yu, Lingyu
Chen, Youling
Suh, Alexander
Oliveira, Edivaldo Herculano Corrêa de
Xu, Luohao
author2_role author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
dc.contributor.author.fl_str_mv Huang, Zhen
Furo, Ivanete de Oliveira
Liu, Jing
Peona, Valentina
Gomes, Anderson J. B
Cen, Wan
Huang, Hao
Zhang, Yanding
Chen, Duo
Xue, Ting
Zhang, Qiujin
Yue, Zhicao
Wang, Quanxi
Yu, Lingyu
Chen, Youling
Suh, Alexander
Oliveira, Edivaldo Herculano Corrêa de
Xu, Luohao
dc.subject.decsPrimary.pt_BR.fl_str_mv Papagaios / genética
Coloração Cromossômica / veterinária
Cariótipo
Cariotipagem / veterinária
Cromossomos Sexuais / genética
topic Papagaios / genética
Coloração Cromossômica / veterinária
Cariótipo
Cariotipagem / veterinária
Cromossomos Sexuais / genética
description The karyotype of most birds has remained considerably stable during more than 100 million years’ evolution, except for some groups, such as parrots. The evolutionary processes and underlying genetic mechanism of chromosomal rearrangements in parrots, however, are poorly understood. Here, using chromosome-level assemblies of four parrot genomes, we uncover frequent chromosome fusions and fissions, with most of them occurring independently among lineages. The increased activities of chromosomal rearrangements in parrots are likely associated with parrot-specific loss of two genes, ALC1 and PARP3, that have known functions in the repair of double-strand breaks and maintenance of genome stability. We further find that the fusion of the ZW sex chromosomes and chromosome 11 has created a pair of neo-sex chromosomes in the ancestor of parrots, and the chromosome 25 has been further added to the sex chromosomes in monk parakeet. Together, the combination of our genomic and cytogenetic analyses characterizes the complex evolutionary history of chromosomal rearrangements and sex chromosomes in parrots.
publishDate 2022
dc.date.accessioned.fl_str_mv 2022-05-30T19:19:43Z
dc.date.available.fl_str_mv 2022-05-30T19:19:43Z
dc.date.issued.fl_str_mv 2022
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
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dc.identifier.citation.fl_str_mv HUANG, Zhen et al. Recurrent chromosome reshuffling and the evolution of neo-sex chromosomes in parrots. Nature Communications, v. 13, n. 1, p. 1-11, Feb. 2022.
dc.identifier.uri.fl_str_mv https://patua.iec.gov.br/handle/iec/4523
dc.identifier.issn.-.fl_str_mv 2041-1723
dc.identifier.doi.-.fl_str_mv 10.1038/s41467-022-28585-1
identifier_str_mv HUANG, Zhen et al. Recurrent chromosome reshuffling and the evolution of neo-sex chromosomes in parrots. Nature Communications, v. 13, n. 1, p. 1-11, Feb. 2022.
2041-1723
10.1038/s41467-022-28585-1
url https://patua.iec.gov.br/handle/iec/4523
dc.language.iso.fl_str_mv eng
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