Recurrent chromosome reshuffling and the evolution of neo-sex chromosomes in parrots
Autor(a) principal: | |
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Data de Publicação: | 2022 |
Outros Autores: | , , , , , , , , , , , , , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Digital do Instituto Evandro Chagas (Patuá) |
DOI: | 10.1038/s41467-022-28585-1 |
Texto Completo: | https://patua.iec.gov.br/handle/iec/4523 |
Resumo: | The karyotype of most birds has remained considerably stable during more than 100 million years’ evolution, except for some groups, such as parrots. The evolutionary processes and underlying genetic mechanism of chromosomal rearrangements in parrots, however, are poorly understood. Here, using chromosome-level assemblies of four parrot genomes, we uncover frequent chromosome fusions and fissions, with most of them occurring independently among lineages. The increased activities of chromosomal rearrangements in parrots are likely associated with parrot-specific loss of two genes, ALC1 and PARP3, that have known functions in the repair of double-strand breaks and maintenance of genome stability. We further find that the fusion of the ZW sex chromosomes and chromosome 11 has created a pair of neo-sex chromosomes in the ancestor of parrots, and the chromosome 25 has been further added to the sex chromosomes in monk parakeet. Together, the combination of our genomic and cytogenetic analyses characterizes the complex evolutionary history of chromosomal rearrangements and sex chromosomes in parrots. |
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Huang, ZhenFuro, Ivanete de OliveiraLiu, JingPeona, ValentinaGomes, Anderson J. BCen, WanHuang, HaoZhang, YandingChen, DuoXue, TingZhang, QiujinYue, ZhicaoWang, QuanxiYu, LingyuChen, YoulingSuh, AlexanderOliveira, Edivaldo Herculano Corrêa deXu, Luohao2022-05-30T19:19:43Z2022-05-30T19:19:43Z2022HUANG, Zhen et al. Recurrent chromosome reshuffling and the evolution of neo-sex chromosomes in parrots. Nature Communications, v. 13, n. 1, p. 1-11, Feb. 2022.2041-1723https://patua.iec.gov.br/handle/iec/452310.1038/s41467-022-28585-1The karyotype of most birds has remained considerably stable during more than 100 million years’ evolution, except for some groups, such as parrots. The evolutionary processes and underlying genetic mechanism of chromosomal rearrangements in parrots, however, are poorly understood. Here, using chromosome-level assemblies of four parrot genomes, we uncover frequent chromosome fusions and fissions, with most of them occurring independently among lineages. The increased activities of chromosomal rearrangements in parrots are likely associated with parrot-specific loss of two genes, ALC1 and PARP3, that have known functions in the repair of double-strand breaks and maintenance of genome stability. We further find that the fusion of the ZW sex chromosomes and chromosome 11 has created a pair of neo-sex chromosomes in the ancestor of parrots, and the chromosome 25 has been further added to the sex chromosomes in monk parakeet. Together, the combination of our genomic and cytogenetic analyses characterizes the complex evolutionary history of chromosomal rearrangements and sex chromosomes in parrots.Fujian Normal University. College of Life Sciences. Fujian Key Laboratory of Developmental and Neural Biology & Southern Center for Biomedical Research. Fuzhou, Fujian, ChinaUniversidade Federal Rural da Amazônia. Laboratório de Reprodução Animal. Parauapebas, PA, Brazil / Ministério da Saúde. Secretaria de Vigilância em Saúde. Instituto Evandro Chagas. Laboratório de Citogenômica e Mutagênese Ambiental. Ananindeua, PA, BrasilUniversity of Vienna. Department of Neurosciences and Developmental Biology. Vienna, AustriaUppsala University. Science for Life Laboratories. Systematic Biology. Department of Organismal Biology. Uppsala, Sweden.Instituto Federal do Pará. Abaetetuba, PA, BrazilFujian Key Laboratory of Special Marine Bio-resources Sustainable Utilization. Fuzhou, Fujian, ChinaFujian Normal University. College of Life Sciences. Fujian Key Laboratory of Developmental and Neural Biology & Southern Center for Biomedical Research. Fuzhou, Fujian, ChinaFujian Normal University. College of Life Sciences. Fujian Key Laboratory of Developmental and Neural Biology & Southern Center for Biomedical Research. Fuzhou, Fujian, ChinaFujian Key Laboratory of Special Marine Bio-resources Sustainable Utilization. Fuzhou, Fujian, ChinaFujian Key Laboratory of Special Marine Bio-resources Sustainable Utilization. Fuzhou, Fujian, ChinaFujian Normal University. College of Life Sciences. Fujian Key Laboratory of Developmental and Neural Biology & Southern Center for Biomedical Research. Fuzhou, Fujian, ChinaShenzhen University School of Medicine. Department of Cell Biology and Medical Genetics. International Cancer Center. Guangdong Key Laboratory for Genome Stability and Disease Prevention. Guangdong, China.Fujian Agriculture and Forestry University. Fujian Key Laboratory of Traditional Chinese Veterinary Medicine and Animal Health. Fuzhou, Fujian, ChinaAnnoroad Gene Technology Co, Ltd. Beijing, ChinaFujian Normal University. College of Life Sciences. Fujian Key Laboratory of Developmental and Neural Biology & Southern Center for Biomedical Research. Fuzhou, Fujian, ChinaUppsala University. Science for Life Laboratories. Department of Organismal Biology, Systematic Biology. Uppsala, Sweden / University of East Anglia. School of Biological Sciences. Organisms and the Environment. Norwich, UKUniversidade Federal do Pará. Programa de Pós-graduação em Genética e Biologia Molecular. Belém, PA, Brazil / Ministério da Saúde. Secretaria de Vigilância em Saúde. Instituto Evandro Chagas. Laboratório de Cultura de Tecidos e Citogenética. Ananindeua, PA, Brasil / Universidade Federal do Pará. Instituto de Ciências Exatas e Naturais. Belém, PA, BrazilUniversity of Vienna. Department of Neurosciences and Developmental Biology. Vienna, Austria / Southwest University. School of Life Sciences. Key Laboratory of Aquatic Science of Chongqing. Key Laboratory of Freshwater Fish Reproduction and Development. Chongqing, ChinaengNature ResearchRecurrent chromosome reshuffling and the evolution of neo-sex chromosomes in parrotsinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articlePapagaios / genéticaColoração Cromossômica / veterináriaCariótipoCariotipagem / veterináriaCromossomos Sexuais / genéticainfo:eu-repo/semantics/openAccessreponame:Repositório Digital do Instituto Evandro Chagas (Patuá)instname:Instituto Evandro Chagas (IEC)instacron:IECORIGINALRecurrent chromosome reshuffling and the evolution of neo-sex chromosomes in parrots.pdfRecurrent chromosome reshuffling and the evolution of neo-sex chromosomes in parrots.pdfapplication/pdf1565562https://patua.iec.gov.br/bitstreams/df983933-cc80-4957-a014-a43908d98ffd/download76b309f92ca5ccdd65c894f5e86e3453MD51LICENSElicense.txtlicense.txttext/plain; charset=utf-82182https://patua.iec.gov.br/bitstreams/9f37c304-46f3-4245-8cba-61a6a85f10e3/download11832eea31b16df8613079d742d61793MD52TEXTRecurrent chromosome reshuffling and the evolution of neo-sex chromosomes in parrots.pdf.txtRecurrent chromosome reshuffling and the evolution of neo-sex chromosomes in parrots.pdf.txtExtracted texttext/plain79331https://patua.iec.gov.br/bitstreams/774a3761-3c8b-4b8c-9c37-71dce5761348/download53bf47456030fc21bea1ce2a2a5fb25fMD55THUMBNAILRecurrent chromosome reshuffling and the evolution of neo-sex chromosomes in parrots.pdf.jpgRecurrent chromosome reshuffling and the evolution of neo-sex chromosomes in parrots.pdf.jpgGenerated Thumbnailimage/jpeg5097https://patua.iec.gov.br/bitstreams/342ebcaf-c17b-4fdc-a8e6-64b797f6d2ad/downloada43040233a742ae2eb76d5140d1b1c50MD56iec/45232022-10-20 21:05:50.804oai:patua.iec.gov.br:iec/4523https://patua.iec.gov.brRepositório InstitucionalPUBhttps://patua.iec.gov.br/oai/requestclariceneta@iec.gov.br || Biblioteca@iec.gov.bropendoar:2022-10-20T21:05:50Repositório Digital do Instituto Evandro Chagas (Patuá) - Instituto Evandro Chagas (IEC)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 |
dc.title.pt_BR.fl_str_mv |
Recurrent chromosome reshuffling and the evolution of neo-sex chromosomes in parrots |
title |
Recurrent chromosome reshuffling and the evolution of neo-sex chromosomes in parrots |
spellingShingle |
Recurrent chromosome reshuffling and the evolution of neo-sex chromosomes in parrots Recurrent chromosome reshuffling and the evolution of neo-sex chromosomes in parrots Huang, Zhen Papagaios / genética Coloração Cromossômica / veterinária Cariótipo Cariotipagem / veterinária Cromossomos Sexuais / genética Huang, Zhen Papagaios / genética Coloração Cromossômica / veterinária Cariótipo Cariotipagem / veterinária Cromossomos Sexuais / genética |
title_short |
Recurrent chromosome reshuffling and the evolution of neo-sex chromosomes in parrots |
title_full |
Recurrent chromosome reshuffling and the evolution of neo-sex chromosomes in parrots |
title_fullStr |
Recurrent chromosome reshuffling and the evolution of neo-sex chromosomes in parrots Recurrent chromosome reshuffling and the evolution of neo-sex chromosomes in parrots |
title_full_unstemmed |
Recurrent chromosome reshuffling and the evolution of neo-sex chromosomes in parrots Recurrent chromosome reshuffling and the evolution of neo-sex chromosomes in parrots |
title_sort |
Recurrent chromosome reshuffling and the evolution of neo-sex chromosomes in parrots |
author |
Huang, Zhen |
author_facet |
Huang, Zhen Huang, Zhen Furo, Ivanete de Oliveira Liu, Jing Peona, Valentina Gomes, Anderson J. B Cen, Wan Huang, Hao Zhang, Yanding Chen, Duo Xue, Ting Zhang, Qiujin Yue, Zhicao Wang, Quanxi Yu, Lingyu Chen, Youling Suh, Alexander Oliveira, Edivaldo Herculano Corrêa de Xu, Luohao Furo, Ivanete de Oliveira Liu, Jing Peona, Valentina Gomes, Anderson J. B Cen, Wan Huang, Hao Zhang, Yanding Chen, Duo Xue, Ting Zhang, Qiujin Yue, Zhicao Wang, Quanxi Yu, Lingyu Chen, Youling Suh, Alexander Oliveira, Edivaldo Herculano Corrêa de Xu, Luohao |
author_role |
author |
author2 |
Furo, Ivanete de Oliveira Liu, Jing Peona, Valentina Gomes, Anderson J. B Cen, Wan Huang, Hao Zhang, Yanding Chen, Duo Xue, Ting Zhang, Qiujin Yue, Zhicao Wang, Quanxi Yu, Lingyu Chen, Youling Suh, Alexander Oliveira, Edivaldo Herculano Corrêa de Xu, Luohao |
author2_role |
author author author author author author author author author author author author author author author author author |
dc.contributor.author.fl_str_mv |
Huang, Zhen Furo, Ivanete de Oliveira Liu, Jing Peona, Valentina Gomes, Anderson J. B Cen, Wan Huang, Hao Zhang, Yanding Chen, Duo Xue, Ting Zhang, Qiujin Yue, Zhicao Wang, Quanxi Yu, Lingyu Chen, Youling Suh, Alexander Oliveira, Edivaldo Herculano Corrêa de Xu, Luohao |
dc.subject.decsPrimary.pt_BR.fl_str_mv |
Papagaios / genética Coloração Cromossômica / veterinária Cariótipo Cariotipagem / veterinária Cromossomos Sexuais / genética |
topic |
Papagaios / genética Coloração Cromossômica / veterinária Cariótipo Cariotipagem / veterinária Cromossomos Sexuais / genética |
description |
The karyotype of most birds has remained considerably stable during more than 100 million years’ evolution, except for some groups, such as parrots. The evolutionary processes and underlying genetic mechanism of chromosomal rearrangements in parrots, however, are poorly understood. Here, using chromosome-level assemblies of four parrot genomes, we uncover frequent chromosome fusions and fissions, with most of them occurring independently among lineages. The increased activities of chromosomal rearrangements in parrots are likely associated with parrot-specific loss of two genes, ALC1 and PARP3, that have known functions in the repair of double-strand breaks and maintenance of genome stability. We further find that the fusion of the ZW sex chromosomes and chromosome 11 has created a pair of neo-sex chromosomes in the ancestor of parrots, and the chromosome 25 has been further added to the sex chromosomes in monk parakeet. Together, the combination of our genomic and cytogenetic analyses characterizes the complex evolutionary history of chromosomal rearrangements and sex chromosomes in parrots. |
publishDate |
2022 |
dc.date.accessioned.fl_str_mv |
2022-05-30T19:19:43Z |
dc.date.available.fl_str_mv |
2022-05-30T19:19:43Z |
dc.date.issued.fl_str_mv |
2022 |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.citation.fl_str_mv |
HUANG, Zhen et al. Recurrent chromosome reshuffling and the evolution of neo-sex chromosomes in parrots. Nature Communications, v. 13, n. 1, p. 1-11, Feb. 2022. |
dc.identifier.uri.fl_str_mv |
https://patua.iec.gov.br/handle/iec/4523 |
dc.identifier.issn.-.fl_str_mv |
2041-1723 |
dc.identifier.doi.-.fl_str_mv |
10.1038/s41467-022-28585-1 |
identifier_str_mv |
HUANG, Zhen et al. Recurrent chromosome reshuffling and the evolution of neo-sex chromosomes in parrots. Nature Communications, v. 13, n. 1, p. 1-11, Feb. 2022. 2041-1723 10.1038/s41467-022-28585-1 |
url |
https://patua.iec.gov.br/handle/iec/4523 |
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eng |
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eng |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
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openAccess |
dc.publisher.none.fl_str_mv |
Nature Research |
publisher.none.fl_str_mv |
Nature Research |
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reponame:Repositório Digital do Instituto Evandro Chagas (Patuá) instname:Instituto Evandro Chagas (IEC) instacron:IEC |
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Instituto Evandro Chagas (IEC) |
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IEC |
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IEC |
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Repositório Digital do Instituto Evandro Chagas (Patuá) |
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Repositório Digital do Instituto Evandro Chagas (Patuá) |
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