Microchromosome BAC-FISH reveals different patterns of genome organization in three charadriiformes species
Autor(a) principal: | |
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Data de Publicação: | 2022 |
Outros Autores: | , , , , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Digital do Instituto Evandro Chagas (Patuá) |
Texto Completo: | https://patua.iec.gov.br/handle/iec/6704 |
Resumo: | Microchromosomes, once considered unimportant elements of the genome, represent fundamental building blocks of bird karyotypes. Shorebirds (Charadriiformes) comprise a wide variety of approximately 390 species and are considered a valuable model group for biological studies. Despite this variety, cytogenetic analysis is still very scarce in this bird order. Thus, the aim of this study was to provide insight into the Charadriiformes karyotype, with emphasis on microchromosome evolution in three species of shorebirds—Calidris canutus, Jacana jacana, and Vanellus chilensis—combining classical and molecular approaches. Cross-species FISH mapping applied two BAC probes for each microchromosome, GGA10–28 (except GGA16). The experiments revealed different patterns of microchromosome organization in the species investigated. Hence, while in C. canutus, we found two microchromosomes involved in chromosome fusions, they were present as single pairs in V. chilensis. We also described a new chromosome number for C. canutus (2n = 92). Hence, this study contributed to the understanding of genome organization and evolution of three shorebird species. |
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Souza, Marcelo SantosBarcellos, Suziane AlvesSantos, Michelly da Silva dosGunski, Ricardo JoséGarnero, Analía del ValleOliveira, Edivaldo Herculano Corrêa deO'Connor, Rebecca EGriffin, Darren KKrestschmer, Rafael2022-12-20T18:49:47Z2022-12-20T18:49:47Z2022SOUZA, Marcelo Santos et al. Microchromosome BAC-FISH reveals different patterns of genome organization in three caradriiformes species. Animals, v. 12, n. 21, p. 1-9, Nov. 2022. DOI: https://doi.org/10.3390/ani122130522076-2615https://patua.iec.gov.br/handle/iec/670410.3390/ani12213052Microchromosomes, once considered unimportant elements of the genome, represent fundamental building blocks of bird karyotypes. Shorebirds (Charadriiformes) comprise a wide variety of approximately 390 species and are considered a valuable model group for biological studies. Despite this variety, cytogenetic analysis is still very scarce in this bird order. Thus, the aim of this study was to provide insight into the Charadriiformes karyotype, with emphasis on microchromosome evolution in three species of shorebirds—Calidris canutus, Jacana jacana, and Vanellus chilensis—combining classical and molecular approaches. Cross-species FISH mapping applied two BAC probes for each microchromosome, GGA10–28 (except GGA16). The experiments revealed different patterns of microchromosome organization in the species investigated. Hence, while in C. canutus, we found two microchromosomes involved in chromosome fusions, they were present as single pairs in V. chilensis. We also described a new chromosome number for C. canutus (2n = 92). Hence, this study contributed to the understanding of genome organization and evolution of three shorebird species.Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq, Proc. 407285/2021-0 ; Proc 307382/2019-2); Fundação de Amparo à Pesquisa do Estado do Rio Grande do Sul (FAPERGS ARD/ARC 22/2551- 0000572-1 ); Biotechnology and Biological Sciences Research Council UK (BB/K008226/1 to Darren K. Griffin)Universidade Federal do Pampa. Laboratório de Diversidade Genética Animal. São Gabriel, RS, Brazil.Universidade Federal do Pampa. Laboratório de Diversidade Genética Animal. São Gabriel, RS, Brazil.Ministério da Saúde. Secretaria de Ciência, Tecnologia, Inovação e Insumos Estratégicos. Instituto Evandro Chagas. Laboratório de Cultura de Tecidos e Citogenética. Ananindeua, PA, Brasil.Universidade Federal do Pampa. Laboratório de Diversidade Genética Animal. São Gabriel, RS, Brazil.Universidade Federal do Pampa. Laboratório de Diversidade Genética Animal. São Gabriel, RS, Brazil.Ministério da Saúde. Secretaria de Ciência, Tecnologia, Inovação e Insumos Estratégicos. Instituto Evandro Chagas. Laboratório de Cultura de Tecidos e Citogenética. Ananindeua, PA, Brasil / Universidade Federal do Pará. Instituto de Ciências Exatas e Naturais. Belém , PA, Brazil.University of Kent. School of Biosciences. Canterbury, UK.University of Kent. School of Biosciences. Canterbury, UK.Universidade Federal de Pelotas. Instituto de Biologia. Departamento de Ecologia, Zoologia e Genética. Pelotas, RS, Brazil.engMDPIMicrochromosome BAC-FISH reveals different patterns of genome organization in three charadriiformes speciesinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleAves / anatomia & histologiaCharadriiformes / genéticaCariótipoHibridização Genômica ComparativaAnálise Citogenéticainfo:eu-repo/semantics/openAccessreponame:Repositório Digital do Instituto Evandro Chagas (Patuá)instname:Instituto Evandro Chagas (IEC)instacron:IECORIGINAL Microchromosome BAC-FISH reveals different patterns of genome organization in three charadriiformes species.pdf Microchromosome BAC-FISH reveals different patterns of genome organization in three charadriiformes species.pdfapplication/pdf865944https://patua.iec.gov.br/bitstreams/3c4cd875-f1de-412d-a601-c1b46529897e/downloada2c905d6e522e803dcf786954958ecc2MD51LICENSElicense.txtlicense.txttext/plain; charset=utf-82182https://patua.iec.gov.br/bitstreams/60c7c7e3-4eb8-40f9-b11f-a4b1b2cf16d5/download11832eea31b16df8613079d742d61793MD52TEXTMicrochromosome BAC-FISH reveals different patterns of genome organization in three charadriiformes species.pdf.txtMicrochromosome BAC-FISH reveals different patterns of genome organization in three charadriiformes species.pdf.txtExtracted texttext/plain43078https://patua.iec.gov.br/bitstreams/844b4cbb-93e2-4c0b-9d6e-30573c898c2e/downloaddedf35a4fdcc0c260ff502969349f7a9MD53THUMBNAILMicrochromosome BAC-FISH reveals different patterns of genome organization in three charadriiformes species.pdf.jpgMicrochromosome BAC-FISH reveals different patterns of genome organization in three charadriiformes species.pdf.jpgGenerated Thumbnailimage/jpeg5607https://patua.iec.gov.br/bitstreams/04a12eb4-248d-4180-98ca-b84795814410/download75b39a455b043295f5d51de677af9799MD54iec/67042022-12-22 11:28:26.032oai:patua.iec.gov.br:iec/6704https://patua.iec.gov.brRepositório InstitucionalPUBhttps://patua.iec.gov.br/oai/requestclariceneta@iec.gov.br || Biblioteca@iec.gov.bropendoar:2022-12-22T11:28:26Repositório Digital do Instituto Evandro Chagas (Patuá) - 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dc.title.pt_BR.fl_str_mv |
Microchromosome BAC-FISH reveals different patterns of genome organization in three charadriiformes species |
title |
Microchromosome BAC-FISH reveals different patterns of genome organization in three charadriiformes species |
spellingShingle |
Microchromosome BAC-FISH reveals different patterns of genome organization in three charadriiformes species Souza, Marcelo Santos Aves / anatomia & histologia Charadriiformes / genética Cariótipo Hibridização Genômica Comparativa Análise Citogenética |
title_short |
Microchromosome BAC-FISH reveals different patterns of genome organization in three charadriiformes species |
title_full |
Microchromosome BAC-FISH reveals different patterns of genome organization in three charadriiformes species |
title_fullStr |
Microchromosome BAC-FISH reveals different patterns of genome organization in three charadriiformes species |
title_full_unstemmed |
Microchromosome BAC-FISH reveals different patterns of genome organization in three charadriiformes species |
title_sort |
Microchromosome BAC-FISH reveals different patterns of genome organization in three charadriiformes species |
author |
Souza, Marcelo Santos |
author_facet |
Souza, Marcelo Santos Barcellos, Suziane Alves Santos, Michelly da Silva dos Gunski, Ricardo José Garnero, Analía del Valle Oliveira, Edivaldo Herculano Corrêa de O'Connor, Rebecca E Griffin, Darren K Krestschmer, Rafael |
author_role |
author |
author2 |
Barcellos, Suziane Alves Santos, Michelly da Silva dos Gunski, Ricardo José Garnero, Analía del Valle Oliveira, Edivaldo Herculano Corrêa de O'Connor, Rebecca E Griffin, Darren K Krestschmer, Rafael |
author2_role |
author author author author author author author author |
dc.contributor.author.fl_str_mv |
Souza, Marcelo Santos Barcellos, Suziane Alves Santos, Michelly da Silva dos Gunski, Ricardo José Garnero, Analía del Valle Oliveira, Edivaldo Herculano Corrêa de O'Connor, Rebecca E Griffin, Darren K Krestschmer, Rafael |
dc.subject.decsPrimary.pt_BR.fl_str_mv |
Aves / anatomia & histologia Charadriiformes / genética Cariótipo Hibridização Genômica Comparativa Análise Citogenética |
topic |
Aves / anatomia & histologia Charadriiformes / genética Cariótipo Hibridização Genômica Comparativa Análise Citogenética |
description |
Microchromosomes, once considered unimportant elements of the genome, represent fundamental building blocks of bird karyotypes. Shorebirds (Charadriiformes) comprise a wide variety of approximately 390 species and are considered a valuable model group for biological studies. Despite this variety, cytogenetic analysis is still very scarce in this bird order. Thus, the aim of this study was to provide insight into the Charadriiformes karyotype, with emphasis on microchromosome evolution in three species of shorebirds—Calidris canutus, Jacana jacana, and Vanellus chilensis—combining classical and molecular approaches. Cross-species FISH mapping applied two BAC probes for each microchromosome, GGA10–28 (except GGA16). The experiments revealed different patterns of microchromosome organization in the species investigated. Hence, while in C. canutus, we found two microchromosomes involved in chromosome fusions, they were present as single pairs in V. chilensis. We also described a new chromosome number for C. canutus (2n = 92). Hence, this study contributed to the understanding of genome organization and evolution of three shorebird species. |
publishDate |
2022 |
dc.date.accessioned.fl_str_mv |
2022-12-20T18:49:47Z |
dc.date.available.fl_str_mv |
2022-12-20T18:49:47Z |
dc.date.issued.fl_str_mv |
2022 |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.citation.fl_str_mv |
SOUZA, Marcelo Santos et al. Microchromosome BAC-FISH reveals different patterns of genome organization in three caradriiformes species. Animals, v. 12, n. 21, p. 1-9, Nov. 2022. DOI: https://doi.org/10.3390/ani12213052 |
dc.identifier.uri.fl_str_mv |
https://patua.iec.gov.br/handle/iec/6704 |
dc.identifier.issn.-.fl_str_mv |
2076-2615 |
dc.identifier.doi.pt_BR.fl_str_mv |
10.3390/ani12213052 |
identifier_str_mv |
SOUZA, Marcelo Santos et al. Microchromosome BAC-FISH reveals different patterns of genome organization in three caradriiformes species. Animals, v. 12, n. 21, p. 1-9, Nov. 2022. DOI: https://doi.org/10.3390/ani12213052 2076-2615 10.3390/ani12213052 |
url |
https://patua.iec.gov.br/handle/iec/6704 |
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eng |
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eng |
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openAccess |
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MDPI |
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MDPI |
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