Microchromosome BAC-FISH reveals different patterns of genome organization in three charadriiformes species

Detalhes bibliográficos
Autor(a) principal: Souza, Marcelo Santos
Data de Publicação: 2022
Outros Autores: Barcellos, Suziane Alves, Santos, Michelly da Silva dos, Gunski, Ricardo José, Garnero, Analía del Valle, Oliveira, Edivaldo Herculano Corrêa de, O'Connor, Rebecca E, Griffin, Darren K, Krestschmer, Rafael
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Digital do Instituto Evandro Chagas (Patuá)
Texto Completo: https://patua.iec.gov.br/handle/iec/6704
Resumo: Microchromosomes, once considered unimportant elements of the genome, represent fundamental building blocks of bird karyotypes. Shorebirds (Charadriiformes) comprise a wide variety of approximately 390 species and are considered a valuable model group for biological studies. Despite this variety, cytogenetic analysis is still very scarce in this bird order. Thus, the aim of this study was to provide insight into the Charadriiformes karyotype, with emphasis on microchromosome evolution in three species of shorebirds—Calidris canutus, Jacana jacana, and Vanellus chilensis—combining classical and molecular approaches. Cross-species FISH mapping applied two BAC probes for each microchromosome, GGA10–28 (except GGA16). The experiments revealed different patterns of microchromosome organization in the species investigated. Hence, while in C. canutus, we found two microchromosomes involved in chromosome fusions, they were present as single pairs in V. chilensis. We also described a new chromosome number for C. canutus (2n = 92). Hence, this study contributed to the understanding of genome organization and evolution of three shorebird species.
id IEC-2_b8ccbff6b9270e2287f4132451e38d4a
oai_identifier_str oai:patua.iec.gov.br:iec/6704
network_acronym_str IEC-2
network_name_str Repositório Digital do Instituto Evandro Chagas (Patuá)
repository_id_str
spelling Souza, Marcelo SantosBarcellos, Suziane AlvesSantos, Michelly da Silva dosGunski, Ricardo JoséGarnero, Analía del ValleOliveira, Edivaldo Herculano Corrêa deO'Connor, Rebecca EGriffin, Darren KKrestschmer, Rafael2022-12-20T18:49:47Z2022-12-20T18:49:47Z2022SOUZA, Marcelo Santos et al. Microchromosome BAC-FISH reveals different patterns of genome organization in three caradriiformes species. Animals, v. 12, n. 21, p. 1-9, Nov. 2022. DOI: https://doi.org/10.3390/ani122130522076-2615https://patua.iec.gov.br/handle/iec/670410.3390/ani12213052Microchromosomes, once considered unimportant elements of the genome, represent fundamental building blocks of bird karyotypes. Shorebirds (Charadriiformes) comprise a wide variety of approximately 390 species and are considered a valuable model group for biological studies. Despite this variety, cytogenetic analysis is still very scarce in this bird order. Thus, the aim of this study was to provide insight into the Charadriiformes karyotype, with emphasis on microchromosome evolution in three species of shorebirds—Calidris canutus, Jacana jacana, and Vanellus chilensis—combining classical and molecular approaches. Cross-species FISH mapping applied two BAC probes for each microchromosome, GGA10–28 (except GGA16). The experiments revealed different patterns of microchromosome organization in the species investigated. Hence, while in C. canutus, we found two microchromosomes involved in chromosome fusions, they were present as single pairs in V. chilensis. We also described a new chromosome number for C. canutus (2n = 92). Hence, this study contributed to the understanding of genome organization and evolution of three shorebird species.Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq, Proc. 407285/2021-0 ; Proc 307382/2019-2); Fundação de Amparo à Pesquisa do Estado do Rio Grande do Sul (FAPERGS ARD/ARC 22/2551- 0000572-1 ); Biotechnology and Biological Sciences Research Council UK (BB/K008226/1 to Darren K. Griffin)Universidade Federal do Pampa. Laboratório de Diversidade Genética Animal. São Gabriel, RS, Brazil.Universidade Federal do Pampa. Laboratório de Diversidade Genética Animal. São Gabriel, RS, Brazil.Ministério da Saúde. Secretaria de Ciência, Tecnologia, Inovação e Insumos Estratégicos. Instituto Evandro Chagas. Laboratório de Cultura de Tecidos e Citogenética. Ananindeua, PA, Brasil.Universidade Federal do Pampa. Laboratório de Diversidade Genética Animal. São Gabriel, RS, Brazil.Universidade Federal do Pampa. Laboratório de Diversidade Genética Animal. São Gabriel, RS, Brazil.Ministério da Saúde. Secretaria de Ciência, Tecnologia, Inovação e Insumos Estratégicos. Instituto Evandro Chagas. Laboratório de Cultura de Tecidos e Citogenética. Ananindeua, PA, Brasil / Universidade Federal do Pará. Instituto de Ciências Exatas e Naturais. Belém , PA, Brazil.University of Kent. School of Biosciences. Canterbury, UK.University of Kent. School of Biosciences. Canterbury, UK.Universidade Federal de Pelotas. Instituto de Biologia. Departamento de Ecologia, Zoologia e Genética. Pelotas, RS, Brazil.engMDPIMicrochromosome BAC-FISH reveals different patterns of genome organization in three charadriiformes speciesinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleAves / anatomia & histologiaCharadriiformes / genéticaCariótipoHibridização Genômica ComparativaAnálise Citogenéticainfo:eu-repo/semantics/openAccessreponame:Repositório Digital do Instituto Evandro Chagas (Patuá)instname:Instituto Evandro Chagas (IEC)instacron:IECORIGINAL Microchromosome BAC-FISH reveals different patterns of genome organization in three charadriiformes species.pdf Microchromosome BAC-FISH reveals different patterns of genome organization in three charadriiformes species.pdfapplication/pdf865944https://patua.iec.gov.br/bitstreams/3c4cd875-f1de-412d-a601-c1b46529897e/downloada2c905d6e522e803dcf786954958ecc2MD51LICENSElicense.txtlicense.txttext/plain; charset=utf-82182https://patua.iec.gov.br/bitstreams/60c7c7e3-4eb8-40f9-b11f-a4b1b2cf16d5/download11832eea31b16df8613079d742d61793MD52TEXTMicrochromosome BAC-FISH reveals different patterns of genome organization in three charadriiformes species.pdf.txtMicrochromosome BAC-FISH reveals different patterns of genome organization in three charadriiformes species.pdf.txtExtracted texttext/plain43078https://patua.iec.gov.br/bitstreams/844b4cbb-93e2-4c0b-9d6e-30573c898c2e/downloaddedf35a4fdcc0c260ff502969349f7a9MD53THUMBNAILMicrochromosome BAC-FISH reveals different patterns of genome organization in three charadriiformes species.pdf.jpgMicrochromosome BAC-FISH reveals different patterns of genome organization in three charadriiformes species.pdf.jpgGenerated Thumbnailimage/jpeg5607https://patua.iec.gov.br/bitstreams/04a12eb4-248d-4180-98ca-b84795814410/download75b39a455b043295f5d51de677af9799MD54iec/67042022-12-22 11:28:26.032oai:patua.iec.gov.br:iec/6704https://patua.iec.gov.brRepositório InstitucionalPUBhttps://patua.iec.gov.br/oai/requestclariceneta@iec.gov.br || Biblioteca@iec.gov.bropendoar:2022-12-22T11:28:26Repositório Digital do Instituto Evandro Chagas (Patuá) - Instituto Evandro Chagas (IEC)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
dc.title.pt_BR.fl_str_mv Microchromosome BAC-FISH reveals different patterns of genome organization in three charadriiformes species
title Microchromosome BAC-FISH reveals different patterns of genome organization in three charadriiformes species
spellingShingle Microchromosome BAC-FISH reveals different patterns of genome organization in three charadriiformes species
Souza, Marcelo Santos
Aves / anatomia & histologia
Charadriiformes / genética
Cariótipo
Hibridização Genômica Comparativa
Análise Citogenética
title_short Microchromosome BAC-FISH reveals different patterns of genome organization in three charadriiformes species
title_full Microchromosome BAC-FISH reveals different patterns of genome organization in three charadriiformes species
title_fullStr Microchromosome BAC-FISH reveals different patterns of genome organization in three charadriiformes species
title_full_unstemmed Microchromosome BAC-FISH reveals different patterns of genome organization in three charadriiformes species
title_sort Microchromosome BAC-FISH reveals different patterns of genome organization in three charadriiformes species
author Souza, Marcelo Santos
author_facet Souza, Marcelo Santos
Barcellos, Suziane Alves
Santos, Michelly da Silva dos
Gunski, Ricardo José
Garnero, Analía del Valle
Oliveira, Edivaldo Herculano Corrêa de
O'Connor, Rebecca E
Griffin, Darren K
Krestschmer, Rafael
author_role author
author2 Barcellos, Suziane Alves
Santos, Michelly da Silva dos
Gunski, Ricardo José
Garnero, Analía del Valle
Oliveira, Edivaldo Herculano Corrêa de
O'Connor, Rebecca E
Griffin, Darren K
Krestschmer, Rafael
author2_role author
author
author
author
author
author
author
author
dc.contributor.author.fl_str_mv Souza, Marcelo Santos
Barcellos, Suziane Alves
Santos, Michelly da Silva dos
Gunski, Ricardo José
Garnero, Analía del Valle
Oliveira, Edivaldo Herculano Corrêa de
O'Connor, Rebecca E
Griffin, Darren K
Krestschmer, Rafael
dc.subject.decsPrimary.pt_BR.fl_str_mv Aves / anatomia & histologia
Charadriiformes / genética
Cariótipo
Hibridização Genômica Comparativa
Análise Citogenética
topic Aves / anatomia & histologia
Charadriiformes / genética
Cariótipo
Hibridização Genômica Comparativa
Análise Citogenética
description Microchromosomes, once considered unimportant elements of the genome, represent fundamental building blocks of bird karyotypes. Shorebirds (Charadriiformes) comprise a wide variety of approximately 390 species and are considered a valuable model group for biological studies. Despite this variety, cytogenetic analysis is still very scarce in this bird order. Thus, the aim of this study was to provide insight into the Charadriiformes karyotype, with emphasis on microchromosome evolution in three species of shorebirds—Calidris canutus, Jacana jacana, and Vanellus chilensis—combining classical and molecular approaches. Cross-species FISH mapping applied two BAC probes for each microchromosome, GGA10–28 (except GGA16). The experiments revealed different patterns of microchromosome organization in the species investigated. Hence, while in C. canutus, we found two microchromosomes involved in chromosome fusions, they were present as single pairs in V. chilensis. We also described a new chromosome number for C. canutus (2n = 92). Hence, this study contributed to the understanding of genome organization and evolution of three shorebird species.
publishDate 2022
dc.date.accessioned.fl_str_mv 2022-12-20T18:49:47Z
dc.date.available.fl_str_mv 2022-12-20T18:49:47Z
dc.date.issued.fl_str_mv 2022
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.citation.fl_str_mv SOUZA, Marcelo Santos et al. Microchromosome BAC-FISH reveals different patterns of genome organization in three caradriiformes species. Animals, v. 12, n. 21, p. 1-9, Nov. 2022. DOI: https://doi.org/10.3390/ani12213052
dc.identifier.uri.fl_str_mv https://patua.iec.gov.br/handle/iec/6704
dc.identifier.issn.-.fl_str_mv 2076-2615
dc.identifier.doi.pt_BR.fl_str_mv 10.3390/ani12213052
identifier_str_mv SOUZA, Marcelo Santos et al. Microchromosome BAC-FISH reveals different patterns of genome organization in three caradriiformes species. Animals, v. 12, n. 21, p. 1-9, Nov. 2022. DOI: https://doi.org/10.3390/ani12213052
2076-2615
10.3390/ani12213052
url https://patua.iec.gov.br/handle/iec/6704
dc.language.iso.fl_str_mv eng
language eng
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.publisher.none.fl_str_mv MDPI
publisher.none.fl_str_mv MDPI
dc.source.none.fl_str_mv reponame:Repositório Digital do Instituto Evandro Chagas (Patuá)
instname:Instituto Evandro Chagas (IEC)
instacron:IEC
instname_str Instituto Evandro Chagas (IEC)
instacron_str IEC
institution IEC
reponame_str Repositório Digital do Instituto Evandro Chagas (Patuá)
collection Repositório Digital do Instituto Evandro Chagas (Patuá)
bitstream.url.fl_str_mv https://patua.iec.gov.br/bitstreams/3c4cd875-f1de-412d-a601-c1b46529897e/download
https://patua.iec.gov.br/bitstreams/60c7c7e3-4eb8-40f9-b11f-a4b1b2cf16d5/download
https://patua.iec.gov.br/bitstreams/844b4cbb-93e2-4c0b-9d6e-30573c898c2e/download
https://patua.iec.gov.br/bitstreams/04a12eb4-248d-4180-98ca-b84795814410/download
bitstream.checksum.fl_str_mv a2c905d6e522e803dcf786954958ecc2
11832eea31b16df8613079d742d61793
dedf35a4fdcc0c260ff502969349f7a9
75b39a455b043295f5d51de677af9799
bitstream.checksumAlgorithm.fl_str_mv MD5
MD5
MD5
MD5
repository.name.fl_str_mv Repositório Digital do Instituto Evandro Chagas (Patuá) - Instituto Evandro Chagas (IEC)
repository.mail.fl_str_mv clariceneta@iec.gov.br || Biblioteca@iec.gov.br
_version_ 1809190055999176704