High genetic diversity and antimicrobial resistance in Escherichia coli highlight Arapaima gigas (Pisces: Arapaimidae) as a reservoir of quinolone-resistant strains in Brazilian Amazon rivers
Autor(a) principal: | |
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Data de Publicação: | 2022 |
Outros Autores: | , , , , , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Digital do Instituto Evandro Chagas (Patuá) |
Texto Completo: | http://patua.iec.gov.br//handle/iec/4541 |
Resumo: | The increasing prevalence of multi-drug resistant (MDR) Escherichia coli in distinct ecological niches, comprising water sources and food-producing animals, such as fish species, has been widely reported. In the present study, quinolone-resistant E. coli isolates from Arapirama gigas, a major fish species in the Brazilian Amazon rivers and fish farms, were characterized regarding their antimicrobial susceptibility, virulence, and genetic diversity. A total of forty (40) specimens of A. gigas, including 20 farmed and 20 wild fish, were included. Thirty-four quinolone-resistant E. coli isolates were phenotypically tested by broth microdilution, while resistance and virulence genes were detected by PCR. Molecular epidemiology and genetic relatedness were analyzed by MLST and PFGE typing. The majority of isolates were classified as MDR and detected harboring blaCTX-M, qnrA and qnrB genes. Enterotoxigenic E. coli pathotype (ETEC) isolates were presented in low prevalence among farmed animals. MLST and PFGE genotyping revealed a wide genetic background, including the detection of internationally spread clones. The obtained data point out A. gigas as a reservoir in Brazilian Amazon aquatic ecosystems and warns of the interference of AMR strains in wildlife and environmental matrices. |
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Lima, Luciana SampaioProietti Junior, Aldo AparecidoRodrigues, Yan CorrêaVieira, Marcelo Cleyton da SilvaLima, Luana Nepomuceno Gondim CostaSouza, Cintya de OliveiraGonçalves, Verônica DiasLima, Marcelo de OliveiraRodrigues, Dália dos PrazeresLima, Karla Valéria Batista2022-06-02T18:32:17Z2022-06-02T18:32:17Z2022LIMA, Luciana Sampaio et al. High genetic diversity and antimicrobial resistance in Escherichia coli highlight Arapaima gigas (Pisces: Arapaimidae) as a reservoir of quinolone-resistant strains in Brazilian Amazon rivers. Microorganisms, v. 10, n. 4, p. 1-16, Apr. 2022.2076-2607http://patua.iec.gov.br//handle/iec/454110.3390/microorganisms10040808The increasing prevalence of multi-drug resistant (MDR) Escherichia coli in distinct ecological niches, comprising water sources and food-producing animals, such as fish species, has been widely reported. In the present study, quinolone-resistant E. coli isolates from Arapirama gigas, a major fish species in the Brazilian Amazon rivers and fish farms, were characterized regarding their antimicrobial susceptibility, virulence, and genetic diversity. A total of forty (40) specimens of A. gigas, including 20 farmed and 20 wild fish, were included. Thirty-four quinolone-resistant E. coli isolates were phenotypically tested by broth microdilution, while resistance and virulence genes were detected by PCR. Molecular epidemiology and genetic relatedness were analyzed by MLST and PFGE typing. The majority of isolates were classified as MDR and detected harboring blaCTX-M, qnrA and qnrB genes. Enterotoxigenic E. coli pathotype (ETEC) isolates were presented in low prevalence among farmed animals. MLST and PFGE genotyping revealed a wide genetic background, including the detection of internationally spread clones. The obtained data point out A. gigas as a reservoir in Brazilian Amazon aquatic ecosystems and warns of the interference of AMR strains in wildlife and environmental matrices.This study received financial support from the Federal University of Amapá through the educational incentive grant to Luciana Sampaio Lima (No. 01/2019-PSPIE/PROGEP/UNIFAP) and through the DECENTRALIZED Term of Reference of Municipal Plans of 6 Municipalities in the State of Amapá (TEDPLAN)—UNIFAP/FUNASA—Process UNIFAP No. 23125.012850/2018-87. 51 p. 2018. The APC was funded by Evandro Chagas Institute (IEC/Pa/Brazil). Yan Corrêa Rodrigues scholarship is funded by Fundação para o Desenvolvimento Científico e Tecnológico em Saúde (FIOTEC).Federal University of Amapá. Faculty of Pharmaceutical Sciences. Macapá, AP, BrazilFederal University of Amapá. Faculty of Pharmaceutical Sciences. Macapá, AP, BrazilMinistério da Saúde. Secretaria de Vigilância em Saúde. Instituto Evandro Chagas. Ananindeua, PA, BrasilMinistério da Saúde. Secretaria de Vigilância em Saúde. Instituto Evandro Chagas. Ananindeua, PA, BrasilMinistério da Saúde. Secretaria de Vigilância em Saúde. Instituto Evandro Chagas. Ananindeua, PA, BrasilMinistério da Saúde. Secretaria de Vigilância em Saúde. Instituto Evandro Chagas. Ananindeua, PA, BrasilOswaldo Cruz Institute. Oswaldo Cruz Foundation. Pavilhão Rocha Lima. Enterobacteria Laboratory. Rio de Janeiro, RJ, BrazilMinistério da Saúde. Secretaria de Vigilância em Saúde. Instituto Evandro Chagas. Ananindeua, PA, BrasilOswaldo Cruz Institute. Oswaldo Cruz Foundation. Pavilhão Rocha Lima. Enterobacteria Laboratory. Rio de Janeiro, RJ, BrazilOswaldo Cruz Institute. Oswaldo Cruz Foundation. Pavilhão Rocha Lima. Enterobacteria Laboratory. Rio de Janeiro, RJ, BrazilengMDPIHigh genetic diversity and antimicrobial resistance in Escherichia coli highlight Arapaima gigas (Pisces: Arapaimidae) as a reservoir of quinolone-resistant strains in Brazilian Amazon riversinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articlePeixes / anatomia & histologiaEscherichia coli / patogenicidadeEcossistema AmazônicoArapirama gigasQuinolonasResistência Microbiana a Medicamentosinfo:eu-repo/semantics/openAccessreponame:Repositório Digital do Instituto Evandro Chagas (Patuá)instname:Instituto Evandro Chagas (IEC)instacron:IECLICENSElicense.txtlicense.txttext/plain; charset=utf-82182https://patua.iec.gov.br/bitstreams/723a4b0b-c49d-4b37-a518-a6ce91fb2b74/download11832eea31b16df8613079d742d61793MD52ORIGINALHigh genetic diversity and antimicrobial resistance in Escherichia coli highlight Arapaima gigas (Pisces: Arapaimidae) as a reservoir of quinolone-resistant strains in Brazilian Amazon rivers.pdfHigh genetic diversity and antimicrobial resistance in Escherichia coli highlight Arapaima gigas (Pisces: Arapaimidae) as a reservoir of quinolone-resistant strains in Brazilian Amazon rivers.pdfapplication/pdf835481https://patua.iec.gov.br/bitstreams/41cb2b58-b9a8-4002-95c0-3c989e678884/downloadc43b4d1bba22395b8468b1f61194dc00MD51TEXTHigh genetic diversity and antimicrobial resistance in Escherichia coli highlight Arapaima gigas (Pisces: Arapaimidae) as a reservoir of quinolone-resistant strains in Brazilian Amazon rivers.pdf.txtHigh genetic diversity and antimicrobial resistance in Escherichia coli highlight Arapaima gigas (Pisces: Arapaimidae) as a reservoir of quinolone-resistant strains in Brazilian Amazon rivers.pdf.txtExtracted texttext/plain75967https://patua.iec.gov.br/bitstreams/6fe058d4-84f6-46c1-a76f-6a48b0a0cda8/download8028a8c6044f32d7dbd5a36016982aa3MD55THUMBNAILHigh genetic diversity and antimicrobial resistance in Escherichia coli highlight Arapaima gigas (Pisces: Arapaimidae) as a reservoir of quinolone-resistant strains in Brazilian Amazon rivers.pdf.jpgHigh genetic diversity and antimicrobial resistance in Escherichia coli highlight Arapaima gigas (Pisces: Arapaimidae) as a reservoir of quinolone-resistant strains in Brazilian Amazon rivers.pdf.jpgGenerated Thumbnailimage/jpeg5967https://patua.iec.gov.br/bitstreams/9b69a701-e5df-4bd2-842f-428643bd898a/download46d7eeeee8b39c914c924dd41bdac2f6MD56iec/45412022-11-04 17:12:51.907oai:patua.iec.gov.br:iec/4541https://patua.iec.gov.brRepositório InstitucionalPUBhttps://patua.iec.gov.br/oai/requestclariceneta@iec.gov.br || Biblioteca@iec.gov.bropendoar:2022-11-04T17:12:51Repositório Digital do Instituto Evandro Chagas (Patuá) - 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dc.title.pt_BR.fl_str_mv |
High genetic diversity and antimicrobial resistance in Escherichia coli highlight Arapaima gigas (Pisces: Arapaimidae) as a reservoir of quinolone-resistant strains in Brazilian Amazon rivers |
title |
High genetic diversity and antimicrobial resistance in Escherichia coli highlight Arapaima gigas (Pisces: Arapaimidae) as a reservoir of quinolone-resistant strains in Brazilian Amazon rivers |
spellingShingle |
High genetic diversity and antimicrobial resistance in Escherichia coli highlight Arapaima gigas (Pisces: Arapaimidae) as a reservoir of quinolone-resistant strains in Brazilian Amazon rivers Lima, Luciana Sampaio Peixes / anatomia & histologia Escherichia coli / patogenicidade Ecossistema Amazônico Arapirama gigas Quinolonas Resistência Microbiana a Medicamentos |
title_short |
High genetic diversity and antimicrobial resistance in Escherichia coli highlight Arapaima gigas (Pisces: Arapaimidae) as a reservoir of quinolone-resistant strains in Brazilian Amazon rivers |
title_full |
High genetic diversity and antimicrobial resistance in Escherichia coli highlight Arapaima gigas (Pisces: Arapaimidae) as a reservoir of quinolone-resistant strains in Brazilian Amazon rivers |
title_fullStr |
High genetic diversity and antimicrobial resistance in Escherichia coli highlight Arapaima gigas (Pisces: Arapaimidae) as a reservoir of quinolone-resistant strains in Brazilian Amazon rivers |
title_full_unstemmed |
High genetic diversity and antimicrobial resistance in Escherichia coli highlight Arapaima gigas (Pisces: Arapaimidae) as a reservoir of quinolone-resistant strains in Brazilian Amazon rivers |
title_sort |
High genetic diversity and antimicrobial resistance in Escherichia coli highlight Arapaima gigas (Pisces: Arapaimidae) as a reservoir of quinolone-resistant strains in Brazilian Amazon rivers |
author |
Lima, Luciana Sampaio |
author_facet |
Lima, Luciana Sampaio Proietti Junior, Aldo Aparecido Rodrigues, Yan Corrêa Vieira, Marcelo Cleyton da Silva Lima, Luana Nepomuceno Gondim Costa Souza, Cintya de Oliveira Gonçalves, Verônica Dias Lima, Marcelo de Oliveira Rodrigues, Dália dos Prazeres Lima, Karla Valéria Batista |
author_role |
author |
author2 |
Proietti Junior, Aldo Aparecido Rodrigues, Yan Corrêa Vieira, Marcelo Cleyton da Silva Lima, Luana Nepomuceno Gondim Costa Souza, Cintya de Oliveira Gonçalves, Verônica Dias Lima, Marcelo de Oliveira Rodrigues, Dália dos Prazeres Lima, Karla Valéria Batista |
author2_role |
author author author author author author author author author |
dc.contributor.author.fl_str_mv |
Lima, Luciana Sampaio Proietti Junior, Aldo Aparecido Rodrigues, Yan Corrêa Vieira, Marcelo Cleyton da Silva Lima, Luana Nepomuceno Gondim Costa Souza, Cintya de Oliveira Gonçalves, Verônica Dias Lima, Marcelo de Oliveira Rodrigues, Dália dos Prazeres Lima, Karla Valéria Batista |
dc.subject.decsPrimary.pt_BR.fl_str_mv |
Peixes / anatomia & histologia Escherichia coli / patogenicidade Ecossistema Amazônico Arapirama gigas Quinolonas Resistência Microbiana a Medicamentos |
topic |
Peixes / anatomia & histologia Escherichia coli / patogenicidade Ecossistema Amazônico Arapirama gigas Quinolonas Resistência Microbiana a Medicamentos |
description |
The increasing prevalence of multi-drug resistant (MDR) Escherichia coli in distinct ecological niches, comprising water sources and food-producing animals, such as fish species, has been widely reported. In the present study, quinolone-resistant E. coli isolates from Arapirama gigas, a major fish species in the Brazilian Amazon rivers and fish farms, were characterized regarding their antimicrobial susceptibility, virulence, and genetic diversity. A total of forty (40) specimens of A. gigas, including 20 farmed and 20 wild fish, were included. Thirty-four quinolone-resistant E. coli isolates were phenotypically tested by broth microdilution, while resistance and virulence genes were detected by PCR. Molecular epidemiology and genetic relatedness were analyzed by MLST and PFGE typing. The majority of isolates were classified as MDR and detected harboring blaCTX-M, qnrA and qnrB genes. Enterotoxigenic E. coli pathotype (ETEC) isolates were presented in low prevalence among farmed animals. MLST and PFGE genotyping revealed a wide genetic background, including the detection of internationally spread clones. The obtained data point out A. gigas as a reservoir in Brazilian Amazon aquatic ecosystems and warns of the interference of AMR strains in wildlife and environmental matrices. |
publishDate |
2022 |
dc.date.accessioned.fl_str_mv |
2022-06-02T18:32:17Z |
dc.date.available.fl_str_mv |
2022-06-02T18:32:17Z |
dc.date.issued.fl_str_mv |
2022 |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.citation.fl_str_mv |
LIMA, Luciana Sampaio et al. High genetic diversity and antimicrobial resistance in Escherichia coli highlight Arapaima gigas (Pisces: Arapaimidae) as a reservoir of quinolone-resistant strains in Brazilian Amazon rivers. Microorganisms, v. 10, n. 4, p. 1-16, Apr. 2022. |
dc.identifier.uri.fl_str_mv |
http://patua.iec.gov.br//handle/iec/4541 |
dc.identifier.issn.-.fl_str_mv |
2076-2607 |
dc.identifier.doi.-.fl_str_mv |
10.3390/microorganisms10040808 |
identifier_str_mv |
LIMA, Luciana Sampaio et al. High genetic diversity and antimicrobial resistance in Escherichia coli highlight Arapaima gigas (Pisces: Arapaimidae) as a reservoir of quinolone-resistant strains in Brazilian Amazon rivers. Microorganisms, v. 10, n. 4, p. 1-16, Apr. 2022. 2076-2607 10.3390/microorganisms10040808 |
url |
http://patua.iec.gov.br//handle/iec/4541 |
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eng |
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eng |
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info:eu-repo/semantics/openAccess |
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openAccess |
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MDPI |
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MDPI |
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