Identification of SCAR markers for genetic authentication of Dendrobium nobile Lindl.

Detalhes bibliográficos
Autor(a) principal: Deng,H.
Data de Publicação: 2022
Outros Autores: Khan,M.A., Liu,X., Fu,J., Mei,Z.
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Brazilian Journal of Biology
Texto Completo: http://old.scielo.br/scielo.php?script=sci_arttext&pid=S1519-69842022000100288
Resumo: Abstract Dendrobium nobile Lindl. is an orcid plant with important medicinal values. This is a colourful houseplant, and also a popular herb in traditional Chinese medicine (TCM). The variants of this plant from different geographic regions might be high, and in this study, we aimed to develop specific sequence characterized amplified region (SCAR) markers for the identification of specific variant of this plant. Different cultivars of D. nobile were collected from nine different places of China, and one cultivar from Myanmar. DNA materials were extracted from the plant samples, random amplified polymorphic DNA (RAPD) were developed, cloned and sequenced for the development of SCAR markers. We have developed four SCAR markers, which are specific to the cultivar from Luzhou China, and clearly distinguishable (genetically) from other cultivars. These SCAR markers are deposited in GenBank (accession number MZ417502, MZ484089, MZ417504 and MZ417505). Four SCAR markers for D. nobile are effective molecular technique to genetically identify the different cultivars or species, and this method is applicable for genetic characterization and identification of other plant species too.
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spelling Identification of SCAR markers for genetic authentication of Dendrobium nobile Lindl.Dendrobium nobile Lindlgenetic authenticationrandom amplified polymorphic DNAsequence characterized amplified regionAbstract Dendrobium nobile Lindl. is an orcid plant with important medicinal values. This is a colourful houseplant, and also a popular herb in traditional Chinese medicine (TCM). The variants of this plant from different geographic regions might be high, and in this study, we aimed to develop specific sequence characterized amplified region (SCAR) markers for the identification of specific variant of this plant. Different cultivars of D. nobile were collected from nine different places of China, and one cultivar from Myanmar. DNA materials were extracted from the plant samples, random amplified polymorphic DNA (RAPD) were developed, cloned and sequenced for the development of SCAR markers. We have developed four SCAR markers, which are specific to the cultivar from Luzhou China, and clearly distinguishable (genetically) from other cultivars. These SCAR markers are deposited in GenBank (accession number MZ417502, MZ484089, MZ417504 and MZ417505). Four SCAR markers for D. nobile are effective molecular technique to genetically identify the different cultivars or species, and this method is applicable for genetic characterization and identification of other plant species too.Instituto Internacional de Ecologia2022-01-01info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersiontext/htmlhttp://old.scielo.br/scielo.php?script=sci_arttext&pid=S1519-69842022000100288Brazilian Journal of Biology v.82 2022reponame:Brazilian Journal of Biologyinstname:Instituto Internacional de Ecologia (IIE)instacron:IIE10.1590/1519-6984.260394info:eu-repo/semantics/openAccessDeng,H.Khan,M.A.Liu,X.Fu,J.Mei,Z.eng2022-06-03T00:00:00Zoai:scielo:S1519-69842022000100288Revistahttps://www.scielo.br/j/bjb/https://old.scielo.br/oai/scielo-oai.phpbjb@bjb.com.br||bjb@bjb.com.br1678-43751519-6984opendoar:2022-06-03T00:00Brazilian Journal of Biology - Instituto Internacional de Ecologia (IIE)false
dc.title.none.fl_str_mv Identification of SCAR markers for genetic authentication of Dendrobium nobile Lindl.
title Identification of SCAR markers for genetic authentication of Dendrobium nobile Lindl.
spellingShingle Identification of SCAR markers for genetic authentication of Dendrobium nobile Lindl.
Deng,H.
Dendrobium nobile Lindl
genetic authentication
random amplified polymorphic DNA
sequence characterized amplified region
title_short Identification of SCAR markers for genetic authentication of Dendrobium nobile Lindl.
title_full Identification of SCAR markers for genetic authentication of Dendrobium nobile Lindl.
title_fullStr Identification of SCAR markers for genetic authentication of Dendrobium nobile Lindl.
title_full_unstemmed Identification of SCAR markers for genetic authentication of Dendrobium nobile Lindl.
title_sort Identification of SCAR markers for genetic authentication of Dendrobium nobile Lindl.
author Deng,H.
author_facet Deng,H.
Khan,M.A.
Liu,X.
Fu,J.
Mei,Z.
author_role author
author2 Khan,M.A.
Liu,X.
Fu,J.
Mei,Z.
author2_role author
author
author
author
dc.contributor.author.fl_str_mv Deng,H.
Khan,M.A.
Liu,X.
Fu,J.
Mei,Z.
dc.subject.por.fl_str_mv Dendrobium nobile Lindl
genetic authentication
random amplified polymorphic DNA
sequence characterized amplified region
topic Dendrobium nobile Lindl
genetic authentication
random amplified polymorphic DNA
sequence characterized amplified region
description Abstract Dendrobium nobile Lindl. is an orcid plant with important medicinal values. This is a colourful houseplant, and also a popular herb in traditional Chinese medicine (TCM). The variants of this plant from different geographic regions might be high, and in this study, we aimed to develop specific sequence characterized amplified region (SCAR) markers for the identification of specific variant of this plant. Different cultivars of D. nobile were collected from nine different places of China, and one cultivar from Myanmar. DNA materials were extracted from the plant samples, random amplified polymorphic DNA (RAPD) were developed, cloned and sequenced for the development of SCAR markers. We have developed four SCAR markers, which are specific to the cultivar from Luzhou China, and clearly distinguishable (genetically) from other cultivars. These SCAR markers are deposited in GenBank (accession number MZ417502, MZ484089, MZ417504 and MZ417505). Four SCAR markers for D. nobile are effective molecular technique to genetically identify the different cultivars or species, and this method is applicable for genetic characterization and identification of other plant species too.
publishDate 2022
dc.date.none.fl_str_mv 2022-01-01
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://old.scielo.br/scielo.php?script=sci_arttext&pid=S1519-69842022000100288
url http://old.scielo.br/scielo.php?script=sci_arttext&pid=S1519-69842022000100288
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv 10.1590/1519-6984.260394
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv text/html
dc.publisher.none.fl_str_mv Instituto Internacional de Ecologia
publisher.none.fl_str_mv Instituto Internacional de Ecologia
dc.source.none.fl_str_mv Brazilian Journal of Biology v.82 2022
reponame:Brazilian Journal of Biology
instname:Instituto Internacional de Ecologia (IIE)
instacron:IIE
instname_str Instituto Internacional de Ecologia (IIE)
instacron_str IIE
institution IIE
reponame_str Brazilian Journal of Biology
collection Brazilian Journal of Biology
repository.name.fl_str_mv Brazilian Journal of Biology - Instituto Internacional de Ecologia (IIE)
repository.mail.fl_str_mv bjb@bjb.com.br||bjb@bjb.com.br
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