The Genome of Anopheles darlingi, the main neotropical malaria vector

Detalhes bibliográficos
Autor(a) principal: Marinotti, Osvaldo
Data de Publicação: 2013
Outros Autores: Cerqueira, Gustavo C., Almeida, Luiz G.P., Ferro, Maria Inês Tiraboschi, Loreto, Elgion Lúcio da Silva, Zaha, Arnaldo, Teixeira, Santuza Ribeiro, Wespiser, Adam R., e Silva, A. A., Schlindwein, Aline Daiane, Pacheco, Ana Carolina Landim, Silva, Artur, Graveley, Brenton R., Walenz, Brian P., Araújo Lima, Bruna de, Ribeiro, Carlos Alexandre Gomes, Nunes-Silva, Carlos Gustavo, Carvalho, Carlos Roberto de, Almeida Soares, Célia Maria A. de, Menezes, Cláudia Beatriz Afonso de, Matiolli, Cleverson Carlos, Caffrey, Daniel R., Araujo, Demetrius Antonio Machado, Oliveira, Diana Magalhães de, Golenbock, Douglas T., Grisard, Edmundo Carlos, Fantinatti-Garboggini, Fabiana, Carvalho, Fabíola Marques de, Barcellos, Fernando Gomes, Prosdocimi, Francisco, May, Gemma, Azevedo Júnior, Gilson Martins de, Guimarães, Giselle Moura, Goldman, Gustavo Henrique, Padilha, Itácio Q.M., Batista, Jacqueline da Silva, Ferro, Jesus Aparecido, Ribeiro, J. M.C., Serrao, Jose Eduardo Lopes Rangel, Dabbas, Karina Maia, Cerdeira, Louise Teixeira, Agnez-Lima, Lucymara Fassarella, Brocchi, Marcelo, Carvalho, Marcos Oliveira de, Teixeira, Marcus de Melo, Mascena Diniz Maia, Maria de, Goldman, Maria Helena S., Schneider, Maria Paula Cruz, Felipe, Maria Sueli Soares, Hungría, Mariangela, Nicolás, Marisa Fabiana, Pereira, Maristela, Montes, Martín Alejandro, Cantão, Maurício Egídio, Vincentz, Michel G.A., Rafael, Míriam Silva, Silverman, Neal, Stoco, Patrícia Hermes, Souza, Rangel Celso, Vicentini, Renato, Gazzinelli, Ricardo Tostes Ostes, Oliveira Neves, Rogério de, Silva, Rosane A., Astolfi-Filho, Spártaco A.T., Maciel, Talles Eduardo Ferreira, Ürményi, Turán Péter, Tadei, Wanderli Pedro, Camargo, Erney Plessmann, Vasconcelos, Ana Tereza
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional do INPA
Texto Completo: https://repositorio.inpa.gov.br/handle/1/16049
Resumo: Anopheles darlingi is the principal neotropical malaria vector, responsible for more than a million cases of malaria per year on the American continent. Anopheles darlingi diverged from the African and Asian malaria vectors ∼100 million years ago (mya) and successfully adapted to the New World environment. Here we present an annotated reference A. darlingi genome, sequenced from a wild population of males and females collected in the Brazilian Amazon. A total of 10 481 predicted protein-coding genes were annotated, 72% of which have their closest counterpart in Anopheles gambiae and 21% have highest similarity with other mosquito species. In spite of a long period of divergent evolution, conserved gene synteny was observed between A. darlingi and A. gambiae. More than 10 million single nucleotide polymorphisms and short indels with potential use as genetic markers were identified. Transposable elements correspond to 2.3% of the A. darlingi genome. Genes associated with hematophagy, immunity and insecticide resistance, directly involved in vectorhuman and vectorparasite interactions, were identified and discussed. This study represents the first effort to sequence the genome of a neotropical malaria vector, and opens a new window through which we can contemplate the evolutionary history of anopheline mosquitoes. It also provides valuable information that may lead to novel strategies to reduce malaria transmission on the South American continent. The A. darlingi genome is accessible at www.labinfo.lncc.br/index.php/anopheles- darlingi. © 2013 The Author(s).
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spelling Marinotti, OsvaldoCerqueira, Gustavo C.Almeida, Luiz G.P.Ferro, Maria Inês TiraboschiLoreto, Elgion Lúcio da SilvaZaha, ArnaldoTeixeira, Santuza RibeiroWespiser, Adam R.e Silva, A. A.Schlindwein, Aline DaianePacheco, Ana Carolina LandimSilva, ArturGraveley, Brenton R.Walenz, Brian P.Araújo Lima, Bruna deRibeiro, Carlos Alexandre GomesNunes-Silva, Carlos GustavoCarvalho, Carlos Roberto deAlmeida Soares, Célia Maria A. deMenezes, Cláudia Beatriz Afonso deMatiolli, Cleverson CarlosCaffrey, Daniel R.Araujo, Demetrius Antonio MachadoOliveira, Diana Magalhães deGolenbock, Douglas T.Grisard, Edmundo CarlosFantinatti-Garboggini, FabianaCarvalho, Fabíola Marques deBarcellos, Fernando GomesProsdocimi, FranciscoMay, GemmaAzevedo Júnior, Gilson Martins deGuimarães, Giselle MouraGoldman, Gustavo HenriquePadilha, Itácio Q.M.Batista, Jacqueline da SilvaFerro, Jesus AparecidoRibeiro, J. M.C.Serrao, Jose Eduardo Lopes RangelDabbas, Karina MaiaCerdeira, Louise TeixeiraAgnez-Lima, Lucymara FassarellaBrocchi, MarceloCarvalho, Marcos Oliveira deTeixeira, Marcus de MeloMascena Diniz Maia, Maria deGoldman, Maria Helena S.Schneider, Maria Paula CruzFelipe, Maria Sueli SoaresHungría, MariangelaNicolás, Marisa FabianaPereira, MaristelaMontes, Martín AlejandroCantão, Maurício EgídioVincentz, Michel G.A.Rafael, Míriam SilvaSilverman, NealStoco, Patrícia HermesSouza, Rangel CelsoVicentini, RenatoGazzinelli, Ricardo Tostes OstesOliveira Neves, Rogério deSilva, Rosane A.Astolfi-Filho, Spártaco A.T.Maciel, Talles Eduardo FerreiraÜrményi, Turán PéterTadei, Wanderli PedroCamargo, Erney PlessmannVasconcelos, Ana Tereza2020-05-22T20:04:32Z2020-05-22T20:04:32Z2013https://repositorio.inpa.gov.br/handle/1/1604910.1093/nar/gkt484Anopheles darlingi is the principal neotropical malaria vector, responsible for more than a million cases of malaria per year on the American continent. Anopheles darlingi diverged from the African and Asian malaria vectors ∼100 million years ago (mya) and successfully adapted to the New World environment. Here we present an annotated reference A. darlingi genome, sequenced from a wild population of males and females collected in the Brazilian Amazon. A total of 10 481 predicted protein-coding genes were annotated, 72% of which have their closest counterpart in Anopheles gambiae and 21% have highest similarity with other mosquito species. In spite of a long period of divergent evolution, conserved gene synteny was observed between A. darlingi and A. gambiae. More than 10 million single nucleotide polymorphisms and short indels with potential use as genetic markers were identified. Transposable elements correspond to 2.3% of the A. darlingi genome. Genes associated with hematophagy, immunity and insecticide resistance, directly involved in vectorhuman and vectorparasite interactions, were identified and discussed. This study represents the first effort to sequence the genome of a neotropical malaria vector, and opens a new window through which we can contemplate the evolutionary history of anopheline mosquitoes. It also provides valuable information that may lead to novel strategies to reduce malaria transmission on the South American continent. The A. darlingi genome is accessible at www.labinfo.lncc.br/index.php/anopheles- darlingi. © 2013 The Author(s).Volume 41, Número 15, Pags. 7387-7400Attribution-NonCommercial-NoDerivs 3.0 Brazilhttp://creativecommons.org/licenses/by-nc-nd/3.0/br/info:eu-repo/semantics/openAccessAnophelesAnopheles DarlingiAnopheles GambiaeCircadian RhythmFemaleGene IdentificationGene SequenceGenetic ConservationGenetic MarkerGenome AnalysisGenome SizeIndel MutationInsect GeneticsInsecticide ResistanceMaleNonhumanPriority JournalSequence HomologyPolymorphism, Single NucleotideSyntenyTransposonXenobiotic MetabolismAnimalAnophelesBrasilChromosomes, InsectDna Transposable ElementsEvolution, MolecularFemaleGenetic VariationGenome, InsectHost-parasite InteractionsInsect ProteinsInsect VectorsInsecticide ResistanceInsecticidesMalariaMaleMolecular Sequence AnnotationPhylogenySyntenyTranscriptomeThe Genome of Anopheles darlingi, the main neotropical malaria vectorinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleNucleic Acids Researchengreponame:Repositório Institucional do INPAinstname:Instituto Nacional de Pesquisas da Amazônia (INPA)instacron:INPAORIGINALartigo-inpa.pdfartigo-inpa.pdfapplication/pdf3358534https://repositorio.inpa.gov.br/bitstream/1/16049/1/artigo-inpa.pdf6f6f45879ca87f7b45e7b9cd3a31518eMD511/160492020-05-22 17:06:08.115oai:repositorio:1/16049Repositório de PublicaçõesPUBhttps://repositorio.inpa.gov.br/oai/requestopendoar:2020-05-22T21:06:08Repositório Institucional do INPA - Instituto Nacional de Pesquisas da Amazônia (INPA)false
dc.title.en.fl_str_mv The Genome of Anopheles darlingi, the main neotropical malaria vector
title The Genome of Anopheles darlingi, the main neotropical malaria vector
spellingShingle The Genome of Anopheles darlingi, the main neotropical malaria vector
Marinotti, Osvaldo
Anopheles
Anopheles Darlingi
Anopheles Gambiae
Circadian Rhythm
Female
Gene Identification
Gene Sequence
Genetic Conservation
Genetic Marker
Genome Analysis
Genome Size
Indel Mutation
Insect Genetics
Insecticide Resistance
Male
Nonhuman
Priority Journal
Sequence Homology
Polymorphism, Single Nucleotide
Synteny
Transposon
Xenobiotic Metabolism
Animal
Anopheles
Brasil
Chromosomes, Insect
Dna Transposable Elements
Evolution, Molecular
Female
Genetic Variation
Genome, Insect
Host-parasite Interactions
Insect Proteins
Insect Vectors
Insecticide Resistance
Insecticides
Malaria
Male
Molecular Sequence Annotation
Phylogeny
Synteny
Transcriptome
title_short The Genome of Anopheles darlingi, the main neotropical malaria vector
title_full The Genome of Anopheles darlingi, the main neotropical malaria vector
title_fullStr The Genome of Anopheles darlingi, the main neotropical malaria vector
title_full_unstemmed The Genome of Anopheles darlingi, the main neotropical malaria vector
title_sort The Genome of Anopheles darlingi, the main neotropical malaria vector
author Marinotti, Osvaldo
author_facet Marinotti, Osvaldo
Cerqueira, Gustavo C.
Almeida, Luiz G.P.
Ferro, Maria Inês Tiraboschi
Loreto, Elgion Lúcio da Silva
Zaha, Arnaldo
Teixeira, Santuza Ribeiro
Wespiser, Adam R.
e Silva, A. A.
Schlindwein, Aline Daiane
Pacheco, Ana Carolina Landim
Silva, Artur
Graveley, Brenton R.
Walenz, Brian P.
Araújo Lima, Bruna de
Ribeiro, Carlos Alexandre Gomes
Nunes-Silva, Carlos Gustavo
Carvalho, Carlos Roberto de
Almeida Soares, Célia Maria A. de
Menezes, Cláudia Beatriz Afonso de
Matiolli, Cleverson Carlos
Caffrey, Daniel R.
Araujo, Demetrius Antonio Machado
Oliveira, Diana Magalhães de
Golenbock, Douglas T.
Grisard, Edmundo Carlos
Fantinatti-Garboggini, Fabiana
Carvalho, Fabíola Marques de
Barcellos, Fernando Gomes
Prosdocimi, Francisco
May, Gemma
Azevedo Júnior, Gilson Martins de
Guimarães, Giselle Moura
Goldman, Gustavo Henrique
Padilha, Itácio Q.M.
Batista, Jacqueline da Silva
Ferro, Jesus Aparecido
Ribeiro, J. M.C.
Serrao, Jose Eduardo Lopes Rangel
Dabbas, Karina Maia
Cerdeira, Louise Teixeira
Agnez-Lima, Lucymara Fassarella
Brocchi, Marcelo
Carvalho, Marcos Oliveira de
Teixeira, Marcus de Melo
Mascena Diniz Maia, Maria de
Goldman, Maria Helena S.
Schneider, Maria Paula Cruz
Felipe, Maria Sueli Soares
Hungría, Mariangela
Nicolás, Marisa Fabiana
Pereira, Maristela
Montes, Martín Alejandro
Cantão, Maurício Egídio
Vincentz, Michel G.A.
Rafael, Míriam Silva
Silverman, Neal
Stoco, Patrícia Hermes
Souza, Rangel Celso
Vicentini, Renato
Gazzinelli, Ricardo Tostes Ostes
Oliveira Neves, Rogério de
Silva, Rosane A.
Astolfi-Filho, Spártaco A.T.
Maciel, Talles Eduardo Ferreira
Ürményi, Turán Péter
Tadei, Wanderli Pedro
Camargo, Erney Plessmann
Vasconcelos, Ana Tereza
author_role author
author2 Cerqueira, Gustavo C.
Almeida, Luiz G.P.
Ferro, Maria Inês Tiraboschi
Loreto, Elgion Lúcio da Silva
Zaha, Arnaldo
Teixeira, Santuza Ribeiro
Wespiser, Adam R.
e Silva, A. A.
Schlindwein, Aline Daiane
Pacheco, Ana Carolina Landim
Silva, Artur
Graveley, Brenton R.
Walenz, Brian P.
Araújo Lima, Bruna de
Ribeiro, Carlos Alexandre Gomes
Nunes-Silva, Carlos Gustavo
Carvalho, Carlos Roberto de
Almeida Soares, Célia Maria A. de
Menezes, Cláudia Beatriz Afonso de
Matiolli, Cleverson Carlos
Caffrey, Daniel R.
Araujo, Demetrius Antonio Machado
Oliveira, Diana Magalhães de
Golenbock, Douglas T.
Grisard, Edmundo Carlos
Fantinatti-Garboggini, Fabiana
Carvalho, Fabíola Marques de
Barcellos, Fernando Gomes
Prosdocimi, Francisco
May, Gemma
Azevedo Júnior, Gilson Martins de
Guimarães, Giselle Moura
Goldman, Gustavo Henrique
Padilha, Itácio Q.M.
Batista, Jacqueline da Silva
Ferro, Jesus Aparecido
Ribeiro, J. M.C.
Serrao, Jose Eduardo Lopes Rangel
Dabbas, Karina Maia
Cerdeira, Louise Teixeira
Agnez-Lima, Lucymara Fassarella
Brocchi, Marcelo
Carvalho, Marcos Oliveira de
Teixeira, Marcus de Melo
Mascena Diniz Maia, Maria de
Goldman, Maria Helena S.
Schneider, Maria Paula Cruz
Felipe, Maria Sueli Soares
Hungría, Mariangela
Nicolás, Marisa Fabiana
Pereira, Maristela
Montes, Martín Alejandro
Cantão, Maurício Egídio
Vincentz, Michel G.A.
Rafael, Míriam Silva
Silverman, Neal
Stoco, Patrícia Hermes
Souza, Rangel Celso
Vicentini, Renato
Gazzinelli, Ricardo Tostes Ostes
Oliveira Neves, Rogério de
Silva, Rosane A.
Astolfi-Filho, Spártaco A.T.
Maciel, Talles Eduardo Ferreira
Ürményi, Turán Péter
Tadei, Wanderli Pedro
Camargo, Erney Plessmann
Vasconcelos, Ana Tereza
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author
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author
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author
author
author
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author
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author
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dc.contributor.author.fl_str_mv Marinotti, Osvaldo
Cerqueira, Gustavo C.
Almeida, Luiz G.P.
Ferro, Maria Inês Tiraboschi
Loreto, Elgion Lúcio da Silva
Zaha, Arnaldo
Teixeira, Santuza Ribeiro
Wespiser, Adam R.
e Silva, A. A.
Schlindwein, Aline Daiane
Pacheco, Ana Carolina Landim
Silva, Artur
Graveley, Brenton R.
Walenz, Brian P.
Araújo Lima, Bruna de
Ribeiro, Carlos Alexandre Gomes
Nunes-Silva, Carlos Gustavo
Carvalho, Carlos Roberto de
Almeida Soares, Célia Maria A. de
Menezes, Cláudia Beatriz Afonso de
Matiolli, Cleverson Carlos
Caffrey, Daniel R.
Araujo, Demetrius Antonio Machado
Oliveira, Diana Magalhães de
Golenbock, Douglas T.
Grisard, Edmundo Carlos
Fantinatti-Garboggini, Fabiana
Carvalho, Fabíola Marques de
Barcellos, Fernando Gomes
Prosdocimi, Francisco
May, Gemma
Azevedo Júnior, Gilson Martins de
Guimarães, Giselle Moura
Goldman, Gustavo Henrique
Padilha, Itácio Q.M.
Batista, Jacqueline da Silva
Ferro, Jesus Aparecido
Ribeiro, J. M.C.
Serrao, Jose Eduardo Lopes Rangel
Dabbas, Karina Maia
Cerdeira, Louise Teixeira
Agnez-Lima, Lucymara Fassarella
Brocchi, Marcelo
Carvalho, Marcos Oliveira de
Teixeira, Marcus de Melo
Mascena Diniz Maia, Maria de
Goldman, Maria Helena S.
Schneider, Maria Paula Cruz
Felipe, Maria Sueli Soares
Hungría, Mariangela
Nicolás, Marisa Fabiana
Pereira, Maristela
Montes, Martín Alejandro
Cantão, Maurício Egídio
Vincentz, Michel G.A.
Rafael, Míriam Silva
Silverman, Neal
Stoco, Patrícia Hermes
Souza, Rangel Celso
Vicentini, Renato
Gazzinelli, Ricardo Tostes Ostes
Oliveira Neves, Rogério de
Silva, Rosane A.
Astolfi-Filho, Spártaco A.T.
Maciel, Talles Eduardo Ferreira
Ürményi, Turán Péter
Tadei, Wanderli Pedro
Camargo, Erney Plessmann
Vasconcelos, Ana Tereza
dc.subject.eng.fl_str_mv Anopheles
Anopheles Darlingi
Anopheles Gambiae
Circadian Rhythm
Female
Gene Identification
Gene Sequence
Genetic Conservation
Genetic Marker
Genome Analysis
Genome Size
Indel Mutation
Insect Genetics
Insecticide Resistance
Male
Nonhuman
Priority Journal
Sequence Homology
Polymorphism, Single Nucleotide
Synteny
Transposon
Xenobiotic Metabolism
Animal
Anopheles
Brasil
Chromosomes, Insect
Dna Transposable Elements
Evolution, Molecular
Female
Genetic Variation
Genome, Insect
Host-parasite Interactions
Insect Proteins
Insect Vectors
Insecticide Resistance
Insecticides
Malaria
Male
Molecular Sequence Annotation
Phylogeny
Synteny
Transcriptome
topic Anopheles
Anopheles Darlingi
Anopheles Gambiae
Circadian Rhythm
Female
Gene Identification
Gene Sequence
Genetic Conservation
Genetic Marker
Genome Analysis
Genome Size
Indel Mutation
Insect Genetics
Insecticide Resistance
Male
Nonhuman
Priority Journal
Sequence Homology
Polymorphism, Single Nucleotide
Synteny
Transposon
Xenobiotic Metabolism
Animal
Anopheles
Brasil
Chromosomes, Insect
Dna Transposable Elements
Evolution, Molecular
Female
Genetic Variation
Genome, Insect
Host-parasite Interactions
Insect Proteins
Insect Vectors
Insecticide Resistance
Insecticides
Malaria
Male
Molecular Sequence Annotation
Phylogeny
Synteny
Transcriptome
description Anopheles darlingi is the principal neotropical malaria vector, responsible for more than a million cases of malaria per year on the American continent. Anopheles darlingi diverged from the African and Asian malaria vectors ∼100 million years ago (mya) and successfully adapted to the New World environment. Here we present an annotated reference A. darlingi genome, sequenced from a wild population of males and females collected in the Brazilian Amazon. A total of 10 481 predicted protein-coding genes were annotated, 72% of which have their closest counterpart in Anopheles gambiae and 21% have highest similarity with other mosquito species. In spite of a long period of divergent evolution, conserved gene synteny was observed between A. darlingi and A. gambiae. More than 10 million single nucleotide polymorphisms and short indels with potential use as genetic markers were identified. Transposable elements correspond to 2.3% of the A. darlingi genome. Genes associated with hematophagy, immunity and insecticide resistance, directly involved in vectorhuman and vectorparasite interactions, were identified and discussed. This study represents the first effort to sequence the genome of a neotropical malaria vector, and opens a new window through which we can contemplate the evolutionary history of anopheline mosquitoes. It also provides valuable information that may lead to novel strategies to reduce malaria transmission on the South American continent. The A. darlingi genome is accessible at www.labinfo.lncc.br/index.php/anopheles- darlingi. © 2013 The Author(s).
publishDate 2013
dc.date.issued.fl_str_mv 2013
dc.date.accessioned.fl_str_mv 2020-05-22T20:04:32Z
dc.date.available.fl_str_mv 2020-05-22T20:04:32Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv https://repositorio.inpa.gov.br/handle/1/16049
dc.identifier.doi.none.fl_str_mv 10.1093/nar/gkt484
url https://repositorio.inpa.gov.br/handle/1/16049
identifier_str_mv 10.1093/nar/gkt484
dc.language.iso.fl_str_mv eng
language eng
dc.relation.ispartof.pt_BR.fl_str_mv Volume 41, Número 15, Pags. 7387-7400
dc.rights.driver.fl_str_mv Attribution-NonCommercial-NoDerivs 3.0 Brazil
http://creativecommons.org/licenses/by-nc-nd/3.0/br/
info:eu-repo/semantics/openAccess
rights_invalid_str_mv Attribution-NonCommercial-NoDerivs 3.0 Brazil
http://creativecommons.org/licenses/by-nc-nd/3.0/br/
eu_rights_str_mv openAccess
dc.publisher.none.fl_str_mv Nucleic Acids Research
publisher.none.fl_str_mv Nucleic Acids Research
dc.source.none.fl_str_mv reponame:Repositório Institucional do INPA
instname:Instituto Nacional de Pesquisas da Amazônia (INPA)
instacron:INPA
instname_str Instituto Nacional de Pesquisas da Amazônia (INPA)
instacron_str INPA
institution INPA
reponame_str Repositório Institucional do INPA
collection Repositório Institucional do INPA
bitstream.url.fl_str_mv https://repositorio.inpa.gov.br/bitstream/1/16049/1/artigo-inpa.pdf
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repository.name.fl_str_mv Repositório Institucional do INPA - Instituto Nacional de Pesquisas da Amazônia (INPA)
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