Lectin genes and their mature proteins: Still an exciting matter, as revealed by biochemistry and bioinformatics analyses of newly reported proteins

Detalhes bibliográficos
Autor(a) principal: Fernandes, Andréia Varmes
Data de Publicação: 2015
Outros Autores: Ramos, Márcio Viana, Costa, José Hélio, Vasconcelos, Ilka Maria Aria, MOREIRA, Renato A., Moreno, Frederico Bruno Mendes Batista, Caldas dos Santos, Maria Eliza, Gonçalves, José Francisco Carvalho de
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Institucional do INPA
Texto Completo: https://repositorio.inpa.gov.br/handle/1/15895
Resumo: Two new lectins were purified through affinity chromatography after crude extract preparation under high ionic strength. The hemagglutinating activity of these lectins from the seeds of the legumes Dioclea bicolor (DBL) and Deguelia scandens (DSL) was inhibited by galactose and glucose, respectively, and the molecular masses were estimated at 24 and 22kDa (via SDS-PAGE), respectively. The alignment of internal peptides of DBL (MS/MS) with known protein sequences revealed similarity to other legume lectins. The N-terminal amino acid sequence of DSL also aligned with legume lectins. Cross-similarities among the two studied lectins were observed only after sequence permutation. More than a dozen lectins have been reported for the genus Dioclea but none that recognize galactose. DSL is the first lectin reported for the Deguelia genus in the tribe Millettieae. With the aid of bioinformatics tools and searches for genome/transcriptome information about closely related sequences, new lectin members of Millettieae were also identified. Electrophoresis profiling and amino acid sequence analysis suggested that DBL-Gal and DSL do not undergo post-transcriptional ConA-like circular permutation. Molecular modeling of the deduced amino acid sequences of the Millettieae lectins suggested that the overall folding of the monomeric structures of legume lectins is conserved. This and other recent studies highlight native plants of the Amazon as renewed sources of lectins. © 2015 Elsevier Ltd.
id INPA-2_e2261213b958245964eb669a35d800dc
oai_identifier_str oai:repositorio:1/15895
network_acronym_str INPA-2
network_name_str Repositório Institucional do INPA
repository_id_str
spelling Fernandes, Andréia VarmesRamos, Márcio VianaCosta, José HélioVasconcelos, Ilka Maria AriaMOREIRA, Renato A.Moreno, Frederico Bruno Mendes BatistaCaldas dos Santos, Maria ElizaGonçalves, José Francisco Carvalho de2020-05-19T21:03:18Z2020-05-19T21:03:18Z2015https://repositorio.inpa.gov.br/handle/1/1589510.1016/j.bse.2015.02.002Two new lectins were purified through affinity chromatography after crude extract preparation under high ionic strength. The hemagglutinating activity of these lectins from the seeds of the legumes Dioclea bicolor (DBL) and Deguelia scandens (DSL) was inhibited by galactose and glucose, respectively, and the molecular masses were estimated at 24 and 22kDa (via SDS-PAGE), respectively. The alignment of internal peptides of DBL (MS/MS) with known protein sequences revealed similarity to other legume lectins. The N-terminal amino acid sequence of DSL also aligned with legume lectins. Cross-similarities among the two studied lectins were observed only after sequence permutation. More than a dozen lectins have been reported for the genus Dioclea but none that recognize galactose. DSL is the first lectin reported for the Deguelia genus in the tribe Millettieae. With the aid of bioinformatics tools and searches for genome/transcriptome information about closely related sequences, new lectin members of Millettieae were also identified. Electrophoresis profiling and amino acid sequence analysis suggested that DBL-Gal and DSL do not undergo post-transcriptional ConA-like circular permutation. Molecular modeling of the deduced amino acid sequences of the Millettieae lectins suggested that the overall folding of the monomeric structures of legume lectins is conserved. This and other recent studies highlight native plants of the Amazon as renewed sources of lectins. © 2015 Elsevier Ltd.Volume 60, Pags. 46-55Attribution-NonCommercial-NoDerivs 3.0 Brazilhttp://creativecommons.org/licenses/by-nc-nd/3.0/br/info:eu-repo/semantics/openAccessBiochemistryBioinformaticsDicotyledonElectrokinesisLegumePeptideProteinSeedAmazon BasinDegueliaDiocleaDioclea BicolorMillettieaeLectin genes and their mature proteins: Still an exciting matter, as revealed by biochemistry and bioinformatics analyses of newly reported proteinsinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleBiochemical Systematics and Ecologyengreponame:Repositório Institucional do INPAinstname:Instituto Nacional de Pesquisas da Amazônia (INPA)instacron:INPAORIGINALartigo-inpa.pdfartigo-inpa.pdfapplication/pdf1579924https://repositorio.inpa.gov.br/bitstream/1/15895/1/artigo-inpa.pdfb5ac4bcc79e88cba22bbeb774ebd12a1MD511/158952020-05-19 17:16:14.917oai:repositorio:1/15895Repositório de PublicaçõesPUBhttps://repositorio.inpa.gov.br/oai/requestopendoar:2020-05-19T21:16:14Repositório Institucional do INPA - Instituto Nacional de Pesquisas da Amazônia (INPA)false
dc.title.en.fl_str_mv Lectin genes and their mature proteins: Still an exciting matter, as revealed by biochemistry and bioinformatics analyses of newly reported proteins
title Lectin genes and their mature proteins: Still an exciting matter, as revealed by biochemistry and bioinformatics analyses of newly reported proteins
spellingShingle Lectin genes and their mature proteins: Still an exciting matter, as revealed by biochemistry and bioinformatics analyses of newly reported proteins
Fernandes, Andréia Varmes
Biochemistry
Bioinformatics
Dicotyledon
Electrokinesis
Legume
Peptide
Protein
Seed
Amazon Basin
Deguelia
Dioclea
Dioclea Bicolor
Millettieae
title_short Lectin genes and their mature proteins: Still an exciting matter, as revealed by biochemistry and bioinformatics analyses of newly reported proteins
title_full Lectin genes and their mature proteins: Still an exciting matter, as revealed by biochemistry and bioinformatics analyses of newly reported proteins
title_fullStr Lectin genes and their mature proteins: Still an exciting matter, as revealed by biochemistry and bioinformatics analyses of newly reported proteins
title_full_unstemmed Lectin genes and their mature proteins: Still an exciting matter, as revealed by biochemistry and bioinformatics analyses of newly reported proteins
title_sort Lectin genes and their mature proteins: Still an exciting matter, as revealed by biochemistry and bioinformatics analyses of newly reported proteins
author Fernandes, Andréia Varmes
author_facet Fernandes, Andréia Varmes
Ramos, Márcio Viana
Costa, José Hélio
Vasconcelos, Ilka Maria Aria
MOREIRA, Renato A.
Moreno, Frederico Bruno Mendes Batista
Caldas dos Santos, Maria Eliza
Gonçalves, José Francisco Carvalho de
author_role author
author2 Ramos, Márcio Viana
Costa, José Hélio
Vasconcelos, Ilka Maria Aria
MOREIRA, Renato A.
Moreno, Frederico Bruno Mendes Batista
Caldas dos Santos, Maria Eliza
Gonçalves, José Francisco Carvalho de
author2_role author
author
author
author
author
author
author
dc.contributor.author.fl_str_mv Fernandes, Andréia Varmes
Ramos, Márcio Viana
Costa, José Hélio
Vasconcelos, Ilka Maria Aria
MOREIRA, Renato A.
Moreno, Frederico Bruno Mendes Batista
Caldas dos Santos, Maria Eliza
Gonçalves, José Francisco Carvalho de
dc.subject.eng.fl_str_mv Biochemistry
Bioinformatics
Dicotyledon
Electrokinesis
Legume
Peptide
Protein
Seed
Amazon Basin
Deguelia
Dioclea
Dioclea Bicolor
Millettieae
topic Biochemistry
Bioinformatics
Dicotyledon
Electrokinesis
Legume
Peptide
Protein
Seed
Amazon Basin
Deguelia
Dioclea
Dioclea Bicolor
Millettieae
description Two new lectins were purified through affinity chromatography after crude extract preparation under high ionic strength. The hemagglutinating activity of these lectins from the seeds of the legumes Dioclea bicolor (DBL) and Deguelia scandens (DSL) was inhibited by galactose and glucose, respectively, and the molecular masses were estimated at 24 and 22kDa (via SDS-PAGE), respectively. The alignment of internal peptides of DBL (MS/MS) with known protein sequences revealed similarity to other legume lectins. The N-terminal amino acid sequence of DSL also aligned with legume lectins. Cross-similarities among the two studied lectins were observed only after sequence permutation. More than a dozen lectins have been reported for the genus Dioclea but none that recognize galactose. DSL is the first lectin reported for the Deguelia genus in the tribe Millettieae. With the aid of bioinformatics tools and searches for genome/transcriptome information about closely related sequences, new lectin members of Millettieae were also identified. Electrophoresis profiling and amino acid sequence analysis suggested that DBL-Gal and DSL do not undergo post-transcriptional ConA-like circular permutation. Molecular modeling of the deduced amino acid sequences of the Millettieae lectins suggested that the overall folding of the monomeric structures of legume lectins is conserved. This and other recent studies highlight native plants of the Amazon as renewed sources of lectins. © 2015 Elsevier Ltd.
publishDate 2015
dc.date.issued.fl_str_mv 2015
dc.date.accessioned.fl_str_mv 2020-05-19T21:03:18Z
dc.date.available.fl_str_mv 2020-05-19T21:03:18Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv https://repositorio.inpa.gov.br/handle/1/15895
dc.identifier.doi.none.fl_str_mv 10.1016/j.bse.2015.02.002
url https://repositorio.inpa.gov.br/handle/1/15895
identifier_str_mv 10.1016/j.bse.2015.02.002
dc.language.iso.fl_str_mv eng
language eng
dc.relation.ispartof.pt_BR.fl_str_mv Volume 60, Pags. 46-55
dc.rights.driver.fl_str_mv Attribution-NonCommercial-NoDerivs 3.0 Brazil
http://creativecommons.org/licenses/by-nc-nd/3.0/br/
info:eu-repo/semantics/openAccess
rights_invalid_str_mv Attribution-NonCommercial-NoDerivs 3.0 Brazil
http://creativecommons.org/licenses/by-nc-nd/3.0/br/
eu_rights_str_mv openAccess
dc.publisher.none.fl_str_mv Biochemical Systematics and Ecology
publisher.none.fl_str_mv Biochemical Systematics and Ecology
dc.source.none.fl_str_mv reponame:Repositório Institucional do INPA
instname:Instituto Nacional de Pesquisas da Amazônia (INPA)
instacron:INPA
instname_str Instituto Nacional de Pesquisas da Amazônia (INPA)
instacron_str INPA
institution INPA
reponame_str Repositório Institucional do INPA
collection Repositório Institucional do INPA
bitstream.url.fl_str_mv https://repositorio.inpa.gov.br/bitstream/1/15895/1/artigo-inpa.pdf
bitstream.checksum.fl_str_mv b5ac4bcc79e88cba22bbeb774ebd12a1
bitstream.checksumAlgorithm.fl_str_mv MD5
repository.name.fl_str_mv Repositório Institucional do INPA - Instituto Nacional de Pesquisas da Amazônia (INPA)
repository.mail.fl_str_mv
_version_ 1809928869041405952