Lectin genes and their mature proteins: Still an exciting matter, as revealed by biochemistry and bioinformatics analyses of newly reported proteins
Autor(a) principal: | |
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Data de Publicação: | 2015 |
Outros Autores: | , , , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Institucional do INPA |
Texto Completo: | https://repositorio.inpa.gov.br/handle/1/15895 |
Resumo: | Two new lectins were purified through affinity chromatography after crude extract preparation under high ionic strength. The hemagglutinating activity of these lectins from the seeds of the legumes Dioclea bicolor (DBL) and Deguelia scandens (DSL) was inhibited by galactose and glucose, respectively, and the molecular masses were estimated at 24 and 22kDa (via SDS-PAGE), respectively. The alignment of internal peptides of DBL (MS/MS) with known protein sequences revealed similarity to other legume lectins. The N-terminal amino acid sequence of DSL also aligned with legume lectins. Cross-similarities among the two studied lectins were observed only after sequence permutation. More than a dozen lectins have been reported for the genus Dioclea but none that recognize galactose. DSL is the first lectin reported for the Deguelia genus in the tribe Millettieae. With the aid of bioinformatics tools and searches for genome/transcriptome information about closely related sequences, new lectin members of Millettieae were also identified. Electrophoresis profiling and amino acid sequence analysis suggested that DBL-Gal and DSL do not undergo post-transcriptional ConA-like circular permutation. Molecular modeling of the deduced amino acid sequences of the Millettieae lectins suggested that the overall folding of the monomeric structures of legume lectins is conserved. This and other recent studies highlight native plants of the Amazon as renewed sources of lectins. © 2015 Elsevier Ltd. |
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Fernandes, Andréia VarmesRamos, Márcio VianaCosta, José HélioVasconcelos, Ilka Maria AriaMOREIRA, Renato A.Moreno, Frederico Bruno Mendes BatistaCaldas dos Santos, Maria ElizaGonçalves, José Francisco Carvalho de2020-05-19T21:03:18Z2020-05-19T21:03:18Z2015https://repositorio.inpa.gov.br/handle/1/1589510.1016/j.bse.2015.02.002Two new lectins were purified through affinity chromatography after crude extract preparation under high ionic strength. The hemagglutinating activity of these lectins from the seeds of the legumes Dioclea bicolor (DBL) and Deguelia scandens (DSL) was inhibited by galactose and glucose, respectively, and the molecular masses were estimated at 24 and 22kDa (via SDS-PAGE), respectively. The alignment of internal peptides of DBL (MS/MS) with known protein sequences revealed similarity to other legume lectins. The N-terminal amino acid sequence of DSL also aligned with legume lectins. Cross-similarities among the two studied lectins were observed only after sequence permutation. More than a dozen lectins have been reported for the genus Dioclea but none that recognize galactose. DSL is the first lectin reported for the Deguelia genus in the tribe Millettieae. With the aid of bioinformatics tools and searches for genome/transcriptome information about closely related sequences, new lectin members of Millettieae were also identified. Electrophoresis profiling and amino acid sequence analysis suggested that DBL-Gal and DSL do not undergo post-transcriptional ConA-like circular permutation. Molecular modeling of the deduced amino acid sequences of the Millettieae lectins suggested that the overall folding of the monomeric structures of legume lectins is conserved. This and other recent studies highlight native plants of the Amazon as renewed sources of lectins. © 2015 Elsevier Ltd.Volume 60, Pags. 46-55Attribution-NonCommercial-NoDerivs 3.0 Brazilhttp://creativecommons.org/licenses/by-nc-nd/3.0/br/info:eu-repo/semantics/openAccessBiochemistryBioinformaticsDicotyledonElectrokinesisLegumePeptideProteinSeedAmazon BasinDegueliaDiocleaDioclea BicolorMillettieaeLectin genes and their mature proteins: Still an exciting matter, as revealed by biochemistry and bioinformatics analyses of newly reported proteinsinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleBiochemical Systematics and Ecologyengreponame:Repositório Institucional do INPAinstname:Instituto Nacional de Pesquisas da Amazônia (INPA)instacron:INPAORIGINALartigo-inpa.pdfartigo-inpa.pdfapplication/pdf1579924https://repositorio.inpa.gov.br/bitstream/1/15895/1/artigo-inpa.pdfb5ac4bcc79e88cba22bbeb774ebd12a1MD511/158952020-05-19 17:16:14.917oai:repositorio:1/15895Repositório de PublicaçõesPUBhttps://repositorio.inpa.gov.br/oai/requestopendoar:2020-05-19T21:16:14Repositório Institucional do INPA - Instituto Nacional de Pesquisas da Amazônia (INPA)false |
dc.title.en.fl_str_mv |
Lectin genes and their mature proteins: Still an exciting matter, as revealed by biochemistry and bioinformatics analyses of newly reported proteins |
title |
Lectin genes and their mature proteins: Still an exciting matter, as revealed by biochemistry and bioinformatics analyses of newly reported proteins |
spellingShingle |
Lectin genes and their mature proteins: Still an exciting matter, as revealed by biochemistry and bioinformatics analyses of newly reported proteins Fernandes, Andréia Varmes Biochemistry Bioinformatics Dicotyledon Electrokinesis Legume Peptide Protein Seed Amazon Basin Deguelia Dioclea Dioclea Bicolor Millettieae |
title_short |
Lectin genes and their mature proteins: Still an exciting matter, as revealed by biochemistry and bioinformatics analyses of newly reported proteins |
title_full |
Lectin genes and their mature proteins: Still an exciting matter, as revealed by biochemistry and bioinformatics analyses of newly reported proteins |
title_fullStr |
Lectin genes and their mature proteins: Still an exciting matter, as revealed by biochemistry and bioinformatics analyses of newly reported proteins |
title_full_unstemmed |
Lectin genes and their mature proteins: Still an exciting matter, as revealed by biochemistry and bioinformatics analyses of newly reported proteins |
title_sort |
Lectin genes and their mature proteins: Still an exciting matter, as revealed by biochemistry and bioinformatics analyses of newly reported proteins |
author |
Fernandes, Andréia Varmes |
author_facet |
Fernandes, Andréia Varmes Ramos, Márcio Viana Costa, José Hélio Vasconcelos, Ilka Maria Aria MOREIRA, Renato A. Moreno, Frederico Bruno Mendes Batista Caldas dos Santos, Maria Eliza Gonçalves, José Francisco Carvalho de |
author_role |
author |
author2 |
Ramos, Márcio Viana Costa, José Hélio Vasconcelos, Ilka Maria Aria MOREIRA, Renato A. Moreno, Frederico Bruno Mendes Batista Caldas dos Santos, Maria Eliza Gonçalves, José Francisco Carvalho de |
author2_role |
author author author author author author author |
dc.contributor.author.fl_str_mv |
Fernandes, Andréia Varmes Ramos, Márcio Viana Costa, José Hélio Vasconcelos, Ilka Maria Aria MOREIRA, Renato A. Moreno, Frederico Bruno Mendes Batista Caldas dos Santos, Maria Eliza Gonçalves, José Francisco Carvalho de |
dc.subject.eng.fl_str_mv |
Biochemistry Bioinformatics Dicotyledon Electrokinesis Legume Peptide Protein Seed Amazon Basin Deguelia Dioclea Dioclea Bicolor Millettieae |
topic |
Biochemistry Bioinformatics Dicotyledon Electrokinesis Legume Peptide Protein Seed Amazon Basin Deguelia Dioclea Dioclea Bicolor Millettieae |
description |
Two new lectins were purified through affinity chromatography after crude extract preparation under high ionic strength. The hemagglutinating activity of these lectins from the seeds of the legumes Dioclea bicolor (DBL) and Deguelia scandens (DSL) was inhibited by galactose and glucose, respectively, and the molecular masses were estimated at 24 and 22kDa (via SDS-PAGE), respectively. The alignment of internal peptides of DBL (MS/MS) with known protein sequences revealed similarity to other legume lectins. The N-terminal amino acid sequence of DSL also aligned with legume lectins. Cross-similarities among the two studied lectins were observed only after sequence permutation. More than a dozen lectins have been reported for the genus Dioclea but none that recognize galactose. DSL is the first lectin reported for the Deguelia genus in the tribe Millettieae. With the aid of bioinformatics tools and searches for genome/transcriptome information about closely related sequences, new lectin members of Millettieae were also identified. Electrophoresis profiling and amino acid sequence analysis suggested that DBL-Gal and DSL do not undergo post-transcriptional ConA-like circular permutation. Molecular modeling of the deduced amino acid sequences of the Millettieae lectins suggested that the overall folding of the monomeric structures of legume lectins is conserved. This and other recent studies highlight native plants of the Amazon as renewed sources of lectins. © 2015 Elsevier Ltd. |
publishDate |
2015 |
dc.date.issued.fl_str_mv |
2015 |
dc.date.accessioned.fl_str_mv |
2020-05-19T21:03:18Z |
dc.date.available.fl_str_mv |
2020-05-19T21:03:18Z |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
https://repositorio.inpa.gov.br/handle/1/15895 |
dc.identifier.doi.none.fl_str_mv |
10.1016/j.bse.2015.02.002 |
url |
https://repositorio.inpa.gov.br/handle/1/15895 |
identifier_str_mv |
10.1016/j.bse.2015.02.002 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.ispartof.pt_BR.fl_str_mv |
Volume 60, Pags. 46-55 |
dc.rights.driver.fl_str_mv |
Attribution-NonCommercial-NoDerivs 3.0 Brazil http://creativecommons.org/licenses/by-nc-nd/3.0/br/ info:eu-repo/semantics/openAccess |
rights_invalid_str_mv |
Attribution-NonCommercial-NoDerivs 3.0 Brazil http://creativecommons.org/licenses/by-nc-nd/3.0/br/ |
eu_rights_str_mv |
openAccess |
dc.publisher.none.fl_str_mv |
Biochemical Systematics and Ecology |
publisher.none.fl_str_mv |
Biochemical Systematics and Ecology |
dc.source.none.fl_str_mv |
reponame:Repositório Institucional do INPA instname:Instituto Nacional de Pesquisas da Amazônia (INPA) instacron:INPA |
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Instituto Nacional de Pesquisas da Amazônia (INPA) |
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INPA |
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INPA |
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Repositório Institucional do INPA |
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Repositório Institucional do INPA |
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https://repositorio.inpa.gov.br/bitstream/1/15895/1/artigo-inpa.pdf |
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