Towards a unified eco-evolutionary framework for fisheries management: Coupling advances in next-generation sequencing with species distribution modelling

Detalhes bibliográficos
Autor(a) principal: Baltazar-Soares, Miguel
Data de Publicação: 2023
Outros Autores: Lima, André R.A., Silva, Gonçalo, Gaget, Elie
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
Texto Completo: http://hdl.handle.net/10400.12/9054
Resumo: The establishment of high-throughput sequencing technologies and subsequent large-scale genomic datasets has flourished across fields of fundamental biological sciences. The introduction of genomic resources in fisheries management has been proposed from multiple angles, ranging from an accurate re-definition of geographical limitations of stocks and connectivity, identification of fine-scale stock structure linked to locally adapted subpopulations, or even the integration with individual-based biophysical models to explore life history strategies. While those clearly enhance our perception of patterns at the light of a spatial scale, temporal depth and consequently forecasting ability might be compromised as an analytical trade-off. Here, we present a framework to reinforce our understanding of stock dynamics by adding also a temporal point of view. We propose to integrate genomic information on temporal projections of species distributions computed by Species Distribution Models (SDMs). SDMs have the potential to project the current and future distribution ranges of a given species from relevant environmental predictors. These projections serve as tools to inform about range expansions and contractions of fish stocks and suggest either suitable locations or local extirpations that may arise in the future. However, SDMs assume that the whole population respond homogenously to the range of environmental conditions. Here, we conceptualize a framework that leverages a conventional Bayesian joint-SDM approach with the incorporation of genomic data. We propose that introducing genomic information at the basis of a joint-SDM will explore the range of suitable habitats where stocks could thrive in the future as a function of their current evolutionary potential.
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spelling Towards a unified eco-evolutionary framework for fisheries management: Coupling advances in next-generation sequencing with species distribution modellingHigh-throughput sequencinggenomicsSpecies distribution model (SDMs)Fisheries applicationsEvolutionary ecologyThe establishment of high-throughput sequencing technologies and subsequent large-scale genomic datasets has flourished across fields of fundamental biological sciences. The introduction of genomic resources in fisheries management has been proposed from multiple angles, ranging from an accurate re-definition of geographical limitations of stocks and connectivity, identification of fine-scale stock structure linked to locally adapted subpopulations, or even the integration with individual-based biophysical models to explore life history strategies. While those clearly enhance our perception of patterns at the light of a spatial scale, temporal depth and consequently forecasting ability might be compromised as an analytical trade-off. Here, we present a framework to reinforce our understanding of stock dynamics by adding also a temporal point of view. We propose to integrate genomic information on temporal projections of species distributions computed by Species Distribution Models (SDMs). SDMs have the potential to project the current and future distribution ranges of a given species from relevant environmental predictors. These projections serve as tools to inform about range expansions and contractions of fish stocks and suggest either suitable locations or local extirpations that may arise in the future. However, SDMs assume that the whole population respond homogenously to the range of environmental conditions. Here, we conceptualize a framework that leverages a conventional Bayesian joint-SDM approach with the incorporation of genomic data. We propose that introducing genomic information at the basis of a joint-SDM will explore the range of suitable habitats where stocks could thrive in the future as a function of their current evolutionary potential.Fundação para a Ciência e Tecnollogia - FCT; ARNETFrontiers Media S.A.Repositório do ISPABaltazar-Soares, MiguelLima, André R.A.Silva, GonçaloGaget, Elie2023-02-27T20:17:10Z20232023-01-01T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfhttp://hdl.handle.net/10400.12/9054engBaltazar-Soares, M., Lima, A. R. A., Silva, G., & Gaget, E. (2023). Towards a unified eco-evolutionary framework for fisheries management: Coupling advances in next-generation sequencing with species distribution modelling. Frontiers in Marine Science, 9 https://doi.org/10.3389/fmars.2022.1014361o10.3389/fmars.2022.1014361info:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2023-03-05T02:15:15Zoai:repositorio.ispa.pt:10400.12/9054Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-19T16:48:13.765879Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse
dc.title.none.fl_str_mv Towards a unified eco-evolutionary framework for fisheries management: Coupling advances in next-generation sequencing with species distribution modelling
title Towards a unified eco-evolutionary framework for fisheries management: Coupling advances in next-generation sequencing with species distribution modelling
spellingShingle Towards a unified eco-evolutionary framework for fisheries management: Coupling advances in next-generation sequencing with species distribution modelling
Baltazar-Soares, Miguel
High-throughput sequencing
genomics
Species distribution model (SDMs)
Fisheries applications
Evolutionary ecology
title_short Towards a unified eco-evolutionary framework for fisheries management: Coupling advances in next-generation sequencing with species distribution modelling
title_full Towards a unified eco-evolutionary framework for fisheries management: Coupling advances in next-generation sequencing with species distribution modelling
title_fullStr Towards a unified eco-evolutionary framework for fisheries management: Coupling advances in next-generation sequencing with species distribution modelling
title_full_unstemmed Towards a unified eco-evolutionary framework for fisheries management: Coupling advances in next-generation sequencing with species distribution modelling
title_sort Towards a unified eco-evolutionary framework for fisheries management: Coupling advances in next-generation sequencing with species distribution modelling
author Baltazar-Soares, Miguel
author_facet Baltazar-Soares, Miguel
Lima, André R.A.
Silva, Gonçalo
Gaget, Elie
author_role author
author2 Lima, André R.A.
Silva, Gonçalo
Gaget, Elie
author2_role author
author
author
dc.contributor.none.fl_str_mv Repositório do ISPA
dc.contributor.author.fl_str_mv Baltazar-Soares, Miguel
Lima, André R.A.
Silva, Gonçalo
Gaget, Elie
dc.subject.por.fl_str_mv High-throughput sequencing
genomics
Species distribution model (SDMs)
Fisheries applications
Evolutionary ecology
topic High-throughput sequencing
genomics
Species distribution model (SDMs)
Fisheries applications
Evolutionary ecology
description The establishment of high-throughput sequencing technologies and subsequent large-scale genomic datasets has flourished across fields of fundamental biological sciences. The introduction of genomic resources in fisheries management has been proposed from multiple angles, ranging from an accurate re-definition of geographical limitations of stocks and connectivity, identification of fine-scale stock structure linked to locally adapted subpopulations, or even the integration with individual-based biophysical models to explore life history strategies. While those clearly enhance our perception of patterns at the light of a spatial scale, temporal depth and consequently forecasting ability might be compromised as an analytical trade-off. Here, we present a framework to reinforce our understanding of stock dynamics by adding also a temporal point of view. We propose to integrate genomic information on temporal projections of species distributions computed by Species Distribution Models (SDMs). SDMs have the potential to project the current and future distribution ranges of a given species from relevant environmental predictors. These projections serve as tools to inform about range expansions and contractions of fish stocks and suggest either suitable locations or local extirpations that may arise in the future. However, SDMs assume that the whole population respond homogenously to the range of environmental conditions. Here, we conceptualize a framework that leverages a conventional Bayesian joint-SDM approach with the incorporation of genomic data. We propose that introducing genomic information at the basis of a joint-SDM will explore the range of suitable habitats where stocks could thrive in the future as a function of their current evolutionary potential.
publishDate 2023
dc.date.none.fl_str_mv 2023-02-27T20:17:10Z
2023
2023-01-01T00:00:00Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://hdl.handle.net/10400.12/9054
url http://hdl.handle.net/10400.12/9054
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Baltazar-Soares, M., Lima, A. R. A., Silva, G., & Gaget, E. (2023). Towards a unified eco-evolutionary framework for fisheries management: Coupling advances in next-generation sequencing with species distribution modelling. Frontiers in Marine Science, 9 https://doi.org/10.3389/fmars.2022.1014361o
10.3389/fmars.2022.1014361
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Frontiers Media S.A.
publisher.none.fl_str_mv Frontiers Media S.A.
dc.source.none.fl_str_mv reponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
instacron:RCAAP
instname_str Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
instacron_str RCAAP
institution RCAAP
reponame_str Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
collection Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
repository.name.fl_str_mv Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
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