High throughput sequencing unravels tomato- pathogen interactions towards a sustainable plant breeding
Autor(a) principal: | |
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Data de Publicação: | 2021 |
Outros Autores: | , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) |
Texto Completo: | http://hdl.handle.net/10174/31342 https://doi.org/Campos, M.D.; Félix, M.D.R.; Patanita, M.; Materatski, P.; Varanda, C. (2021). High throughput sequencing unravels tomato- pathogen interactions towards a sustainable plant breeding. Horticulture Research, 8, 171. doi.org/10.1038/s41438-021-00607-x. https://doi.org/doi.org/10.1038/s41438-021-00607-x |
Resumo: | Tomato (Solanum lycopersicum) is one of the most economically important vegetables throughout the world. It is one of the best studied cultivated dicotyledonous plants, often used as a model system for plant research into classical genetics, cytogenetics, molecular genetics, and molecular biology. Tomato plants are affected by different pathogens such as viruses, viroids, fungi, oomycetes, bacteria, and nematodes, that reduce yield and affect product quality. The study of tomato as a plant-pathogen system helps to accelerate the discovery and understanding of the molecular mechanisms underlying disease resistance and offers the opportunity of improving the yield and quality of their edible products. The use of functional genomics has contributed to this purpose through both traditional and recently developed techniques, that allow the identification of plant key functional genes in susceptible and resistant responses, and the understanding of the molecular basis of compatible interactions during pathogen attack. Nextgeneration sequencing technologies (NGS), which produce massive quantities of sequencing data, have greatly accelerated research in biological sciences and offer great opportunities to better understand the molecular networks of plant–pathogen interactions. In this review, we summarize important research that used high-throughput RNA-seq technology to obtain transcriptome changes in tomato plants in response to a wide range of pathogens such as viruses, fungi, bacteria, oomycetes, and nematodes. These findings will facilitate genetic engineering efforts to incorporate new sources of resistance in tomato for protection against pathogens and are of major importance for sustainable plant-disease management, namely the ones relying on the plant’s innate immune mechanisms in view of plant breeding. |
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High throughput sequencing unravels tomato- pathogen interactions towards a sustainable plant breedingTomato (Solanum lycopersicum) is one of the most economically important vegetables throughout the world. It is one of the best studied cultivated dicotyledonous plants, often used as a model system for plant research into classical genetics, cytogenetics, molecular genetics, and molecular biology. Tomato plants are affected by different pathogens such as viruses, viroids, fungi, oomycetes, bacteria, and nematodes, that reduce yield and affect product quality. The study of tomato as a plant-pathogen system helps to accelerate the discovery and understanding of the molecular mechanisms underlying disease resistance and offers the opportunity of improving the yield and quality of their edible products. The use of functional genomics has contributed to this purpose through both traditional and recently developed techniques, that allow the identification of plant key functional genes in susceptible and resistant responses, and the understanding of the molecular basis of compatible interactions during pathogen attack. Nextgeneration sequencing technologies (NGS), which produce massive quantities of sequencing data, have greatly accelerated research in biological sciences and offer great opportunities to better understand the molecular networks of plant–pathogen interactions. In this review, we summarize important research that used high-throughput RNA-seq technology to obtain transcriptome changes in tomato plants in response to a wide range of pathogens such as viruses, fungi, bacteria, oomycetes, and nematodes. These findings will facilitate genetic engineering efforts to incorporate new sources of resistance in tomato for protection against pathogens and are of major importance for sustainable plant-disease management, namely the ones relying on the plant’s innate immune mechanisms in view of plant breeding.Nature2022-03-09T15:28:04Z2022-03-092021-01-01T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articlehttp://hdl.handle.net/10174/31342https://doi.org/Campos, M.D.; Félix, M.D.R.; Patanita, M.; Materatski, P.; Varanda, C. (2021). High throughput sequencing unravels tomato- pathogen interactions towards a sustainable plant breeding. Horticulture Research, 8, 171. doi.org/10.1038/s41438-021-00607-x.http://hdl.handle.net/10174/31342https://doi.org/doi.org/10.1038/s41438-021-00607-xenghttps://www.nature.com/articles/s41438-021-00607-x.pdfmdcc@uevora.ptmrff@uevora.ptmpatanita@uevora.ptpmateratski@uevora.ptcarlavaranda@uevora.pt581Campos, MariaFelix, MariaPatanita, MarianaMateratski, PatrickVaranda, Carlainfo:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2024-01-03T19:30:45Zoai:dspace.uevora.pt:10174/31342Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-20T01:20:30.480578Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse |
dc.title.none.fl_str_mv |
High throughput sequencing unravels tomato- pathogen interactions towards a sustainable plant breeding |
title |
High throughput sequencing unravels tomato- pathogen interactions towards a sustainable plant breeding |
spellingShingle |
High throughput sequencing unravels tomato- pathogen interactions towards a sustainable plant breeding Campos, Maria |
title_short |
High throughput sequencing unravels tomato- pathogen interactions towards a sustainable plant breeding |
title_full |
High throughput sequencing unravels tomato- pathogen interactions towards a sustainable plant breeding |
title_fullStr |
High throughput sequencing unravels tomato- pathogen interactions towards a sustainable plant breeding |
title_full_unstemmed |
High throughput sequencing unravels tomato- pathogen interactions towards a sustainable plant breeding |
title_sort |
High throughput sequencing unravels tomato- pathogen interactions towards a sustainable plant breeding |
author |
Campos, Maria |
author_facet |
Campos, Maria Felix, Maria Patanita, Mariana Materatski, Patrick Varanda, Carla |
author_role |
author |
author2 |
Felix, Maria Patanita, Mariana Materatski, Patrick Varanda, Carla |
author2_role |
author author author author |
dc.contributor.author.fl_str_mv |
Campos, Maria Felix, Maria Patanita, Mariana Materatski, Patrick Varanda, Carla |
description |
Tomato (Solanum lycopersicum) is one of the most economically important vegetables throughout the world. It is one of the best studied cultivated dicotyledonous plants, often used as a model system for plant research into classical genetics, cytogenetics, molecular genetics, and molecular biology. Tomato plants are affected by different pathogens such as viruses, viroids, fungi, oomycetes, bacteria, and nematodes, that reduce yield and affect product quality. The study of tomato as a plant-pathogen system helps to accelerate the discovery and understanding of the molecular mechanisms underlying disease resistance and offers the opportunity of improving the yield and quality of their edible products. The use of functional genomics has contributed to this purpose through both traditional and recently developed techniques, that allow the identification of plant key functional genes in susceptible and resistant responses, and the understanding of the molecular basis of compatible interactions during pathogen attack. Nextgeneration sequencing technologies (NGS), which produce massive quantities of sequencing data, have greatly accelerated research in biological sciences and offer great opportunities to better understand the molecular networks of plant–pathogen interactions. In this review, we summarize important research that used high-throughput RNA-seq technology to obtain transcriptome changes in tomato plants in response to a wide range of pathogens such as viruses, fungi, bacteria, oomycetes, and nematodes. These findings will facilitate genetic engineering efforts to incorporate new sources of resistance in tomato for protection against pathogens and are of major importance for sustainable plant-disease management, namely the ones relying on the plant’s innate immune mechanisms in view of plant breeding. |
publishDate |
2021 |
dc.date.none.fl_str_mv |
2021-01-01T00:00:00Z 2022-03-09T15:28:04Z 2022-03-09 |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://hdl.handle.net/10174/31342 https://doi.org/Campos, M.D.; Félix, M.D.R.; Patanita, M.; Materatski, P.; Varanda, C. (2021). High throughput sequencing unravels tomato- pathogen interactions towards a sustainable plant breeding. Horticulture Research, 8, 171. doi.org/10.1038/s41438-021-00607-x. http://hdl.handle.net/10174/31342 https://doi.org/doi.org/10.1038/s41438-021-00607-x |
url |
http://hdl.handle.net/10174/31342 https://doi.org/Campos, M.D.; Félix, M.D.R.; Patanita, M.; Materatski, P.; Varanda, C. (2021). High throughput sequencing unravels tomato- pathogen interactions towards a sustainable plant breeding. Horticulture Research, 8, 171. doi.org/10.1038/s41438-021-00607-x. https://doi.org/doi.org/10.1038/s41438-021-00607-x |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
https://www.nature.com/articles/s41438-021-00607-x.pdf mdcc@uevora.pt mrff@uevora.pt mpatanita@uevora.pt pmateratski@uevora.pt carlavaranda@uevora.pt 581 |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.publisher.none.fl_str_mv |
Nature |
publisher.none.fl_str_mv |
Nature |
dc.source.none.fl_str_mv |
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Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação |
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RCAAP |
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RCAAP |
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Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) |
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Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) |
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Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação |
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1799136686532198400 |