Cell fate potentials and switching kinetics uncovered in a classic bistable genetic switch

Detalhes bibliográficos
Autor(a) principal: Fang, Xiaona
Data de Publicação: 2018
Outros Autores: Liu, Qiong, Bohrer, Christopher, Hensel, Zach, Han, Wei, Wang, Jin, Xiao, Jie
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
Texto Completo: https://doi.org/10.1038/s41467-018-05071-1
Resumo: Bistable switches are common gene regulatory motifs directing two mutually exclusive cell fates. Theoretical studies suggest that bistable switches are sufficient to encode more than two cell fates without rewiring the circuitry due to the non-equilibrium, heterogeneous cellular environment. However, such a scenario has not been experimentally observed. Here by developing a new, dual single-molecule gene-expression reporting system, we find that for the two mutually repressing transcription factors CI and Cro in the classic bistable bacteriophage λ switch, there exist two new production states, in which neither CI nor Cro is produced, or both CI and Cro are produced. We construct the corresponding potential landscape and map the transition kinetics among the four production states. These findings uncover cell fate potentials beyond the classical picture of bistable switches, and open a new window to explore the genetic and environmental origins of the cell fate decision-making process in gene regulatory networks.
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spelling Cell fate potentials and switching kinetics uncovered in a classic bistable genetic switchChemistry(all)Biochemistry, Genetics and Molecular Biology(all)Physics and Astronomy(all)Bistable switches are common gene regulatory motifs directing two mutually exclusive cell fates. Theoretical studies suggest that bistable switches are sufficient to encode more than two cell fates without rewiring the circuitry due to the non-equilibrium, heterogeneous cellular environment. However, such a scenario has not been experimentally observed. Here by developing a new, dual single-molecule gene-expression reporting system, we find that for the two mutually repressing transcription factors CI and Cro in the classic bistable bacteriophage λ switch, there exist two new production states, in which neither CI nor Cro is produced, or both CI and Cro are produced. We construct the corresponding potential landscape and map the transition kinetics among the four production states. These findings uncover cell fate potentials beyond the classical picture of bistable switches, and open a new window to explore the genetic and environmental origins of the cell fate decision-making process in gene regulatory networks.Molecular, Structural and Cellular Microbiology (MOSTMICRO)Instituto de Tecnologia Química e Biológica António Xavier (ITQB)RUNFang, XiaonaLiu, QiongBohrer, ChristopherHensel, ZachHan, WeiWang, JinXiao, Jie2019-04-26T22:14:15Z2018-12-012018-12-01T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfhttps://doi.org/10.1038/s41467-018-05071-1eng2041-1723PURE: 12363866http://www.scopus.com/inward/record.url?scp=85050388148&partnerID=8YFLogxKhttps://doi.org/10.1038/s41467-018-05071-1info:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2024-03-11T04:32:01Zoai:run.unl.pt:10362/67798Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-20T03:34:39.904607Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse
dc.title.none.fl_str_mv Cell fate potentials and switching kinetics uncovered in a classic bistable genetic switch
title Cell fate potentials and switching kinetics uncovered in a classic bistable genetic switch
spellingShingle Cell fate potentials and switching kinetics uncovered in a classic bistable genetic switch
Fang, Xiaona
Chemistry(all)
Biochemistry, Genetics and Molecular Biology(all)
Physics and Astronomy(all)
title_short Cell fate potentials and switching kinetics uncovered in a classic bistable genetic switch
title_full Cell fate potentials and switching kinetics uncovered in a classic bistable genetic switch
title_fullStr Cell fate potentials and switching kinetics uncovered in a classic bistable genetic switch
title_full_unstemmed Cell fate potentials and switching kinetics uncovered in a classic bistable genetic switch
title_sort Cell fate potentials and switching kinetics uncovered in a classic bistable genetic switch
author Fang, Xiaona
author_facet Fang, Xiaona
Liu, Qiong
Bohrer, Christopher
Hensel, Zach
Han, Wei
Wang, Jin
Xiao, Jie
author_role author
author2 Liu, Qiong
Bohrer, Christopher
Hensel, Zach
Han, Wei
Wang, Jin
Xiao, Jie
author2_role author
author
author
author
author
author
dc.contributor.none.fl_str_mv Molecular, Structural and Cellular Microbiology (MOSTMICRO)
Instituto de Tecnologia Química e Biológica António Xavier (ITQB)
RUN
dc.contributor.author.fl_str_mv Fang, Xiaona
Liu, Qiong
Bohrer, Christopher
Hensel, Zach
Han, Wei
Wang, Jin
Xiao, Jie
dc.subject.por.fl_str_mv Chemistry(all)
Biochemistry, Genetics and Molecular Biology(all)
Physics and Astronomy(all)
topic Chemistry(all)
Biochemistry, Genetics and Molecular Biology(all)
Physics and Astronomy(all)
description Bistable switches are common gene regulatory motifs directing two mutually exclusive cell fates. Theoretical studies suggest that bistable switches are sufficient to encode more than two cell fates without rewiring the circuitry due to the non-equilibrium, heterogeneous cellular environment. However, such a scenario has not been experimentally observed. Here by developing a new, dual single-molecule gene-expression reporting system, we find that for the two mutually repressing transcription factors CI and Cro in the classic bistable bacteriophage λ switch, there exist two new production states, in which neither CI nor Cro is produced, or both CI and Cro are produced. We construct the corresponding potential landscape and map the transition kinetics among the four production states. These findings uncover cell fate potentials beyond the classical picture of bistable switches, and open a new window to explore the genetic and environmental origins of the cell fate decision-making process in gene regulatory networks.
publishDate 2018
dc.date.none.fl_str_mv 2018-12-01
2018-12-01T00:00:00Z
2019-04-26T22:14:15Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
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dc.identifier.uri.fl_str_mv https://doi.org/10.1038/s41467-018-05071-1
url https://doi.org/10.1038/s41467-018-05071-1
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv 2041-1723
PURE: 12363866
http://www.scopus.com/inward/record.url?scp=85050388148&partnerID=8YFLogxK
https://doi.org/10.1038/s41467-018-05071-1
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