LA-iMageS

Detalhes bibliográficos
Autor(a) principal: López-Fernández, Hugo
Data de Publicação: 2016
Outros Autores: Pessôa, Gustavo S., Arruda, Marco A. Z., Capelo-Martínez, José L., Fdez-Riverola, Florentino, Glez-Peña, Daniel, Reboiro-Jato, Miguel
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
Texto Completo: https://doi.org/10.1186/s13321-016-0178-7
Resumo: The authors thank the Fundacao de Amparo a Pesquisa do Estado de Sao Paulo (FAPESP, Sao Paulo, Brazil), the Conselho Nacional de Desenvolvimento Cientifico e Tecnologico (CNPq, Brasilia, Brazil), the Coordenacao de Aperfeicoamento de Pessoal de Nivel Superior (CAPES, Brasilia, Brazil), and the INOU-16-05 project from the Provincial Council of Ourense for financial support and fellowships. Dr. Capelo acknowledges support given by the Associate Laboratory for Green Chemistry LAQV which is financed by national funds from FCT/MEC (UID/QUI/50006/2013) and co-financed by the ERDF under the PT2020 Partnership Agreement (POCI-01-0145-FEDER-007265), and by the Unidade de Ciencias Biomoleculares Aplicadas-UCIBIO which is financed by national funds from FCT/MEC (UID/Multi/04378/2013) and co-financed by the ERDF under the PT2020 Partnership Agreement (POCI-01-0145-FEDER-007728). H. Lopez-Fernandez is supported by a postdoctoral fellowship from Xunta de Galicia. SING group thanks CITI (Centro de Investigacion, Transferencia e Innovacion) from University of Vigo for hosting its IT infrastructure.
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spelling LA-iMageSa software for elemental distribution bioimaging using LA-ICP-MS dataElemental distributionLA-ICP-MS imagingLaser ablationSoftwareComputer Science ApplicationsPhysical and Theoretical ChemistryComputer Graphics and Computer-Aided DesignLibrary and Information SciencesThe authors thank the Fundacao de Amparo a Pesquisa do Estado de Sao Paulo (FAPESP, Sao Paulo, Brazil), the Conselho Nacional de Desenvolvimento Cientifico e Tecnologico (CNPq, Brasilia, Brazil), the Coordenacao de Aperfeicoamento de Pessoal de Nivel Superior (CAPES, Brasilia, Brazil), and the INOU-16-05 project from the Provincial Council of Ourense for financial support and fellowships. Dr. Capelo acknowledges support given by the Associate Laboratory for Green Chemistry LAQV which is financed by national funds from FCT/MEC (UID/QUI/50006/2013) and co-financed by the ERDF under the PT2020 Partnership Agreement (POCI-01-0145-FEDER-007265), and by the Unidade de Ciencias Biomoleculares Aplicadas-UCIBIO which is financed by national funds from FCT/MEC (UID/Multi/04378/2013) and co-financed by the ERDF under the PT2020 Partnership Agreement (POCI-01-0145-FEDER-007728). H. Lopez-Fernandez is supported by a postdoctoral fellowship from Xunta de Galicia. SING group thanks CITI (Centro de Investigacion, Transferencia e Innovacion) from University of Vigo for hosting its IT infrastructure.The spatial distribution of chemical elements in different types of samples is an important field in several research areas such as biology, paleontology or biomedicine, among others. Elemental distribution imaging by laser ablation inductively coupled plasma mass spectrometry (LA-ICP-MS) is an effective technique for qualitative and quantitative imaging due to its high spatial resolution and sensitivity. By applying this technique, vast amounts of raw data are generated to obtain high-quality images, essentially making the use of specific LA-ICP-MS imaging software that can process such data absolutely mandatory. Since existing solutions are usually commercial or hard-to-use for average users, this work introduces LA-iMageS, an open-source, free-to-use multiplatform application for fast and automatic generation of high-quality elemental distribution bioimages from LA-ICP-MS data in the PerkinElmer Elan XL format, whose results can be directly exported to external applications for further analysis. A key strength of LA-iMageS is its substantial added value for users, with particular regard to the customization of the elemental distribution bioimages, which allows, among other features, the ability to change color maps, increase image resolution or toggle between 2D and 3D visualizations.DQ - Departamento de QuímicaUCIBIO - Applied Molecular Biosciences UnitRUNLópez-Fernández, HugoPessôa, Gustavo S.Arruda, Marco A. Z.Capelo-Martínez, José L.Fdez-Riverola, FlorentinoGlez-Peña, DanielReboiro-Jato, Miguel2018-05-09T22:17:34Z2016-11-182016-11-18T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/article10application/pdfhttps://doi.org/10.1186/s13321-016-0178-7eng1758-2946PURE: 3866898http://www.scopus.com/inward/record.url?scp=84995543426&partnerID=8YFLogxKhttps://doi.org/10.1186/s13321-016-0178-7info:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2024-03-11T04:19:42Zoai:run.unl.pt:10362/36344Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-20T03:30:26.496671Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse
dc.title.none.fl_str_mv LA-iMageS
a software for elemental distribution bioimaging using LA-ICP-MS data
title LA-iMageS
spellingShingle LA-iMageS
López-Fernández, Hugo
Elemental distribution
LA-ICP-MS imaging
Laser ablation
Software
Computer Science Applications
Physical and Theoretical Chemistry
Computer Graphics and Computer-Aided Design
Library and Information Sciences
title_short LA-iMageS
title_full LA-iMageS
title_fullStr LA-iMageS
title_full_unstemmed LA-iMageS
title_sort LA-iMageS
author López-Fernández, Hugo
author_facet López-Fernández, Hugo
Pessôa, Gustavo S.
Arruda, Marco A. Z.
Capelo-Martínez, José L.
Fdez-Riverola, Florentino
Glez-Peña, Daniel
Reboiro-Jato, Miguel
author_role author
author2 Pessôa, Gustavo S.
Arruda, Marco A. Z.
Capelo-Martínez, José L.
Fdez-Riverola, Florentino
Glez-Peña, Daniel
Reboiro-Jato, Miguel
author2_role author
author
author
author
author
author
dc.contributor.none.fl_str_mv DQ - Departamento de Química
UCIBIO - Applied Molecular Biosciences Unit
RUN
dc.contributor.author.fl_str_mv López-Fernández, Hugo
Pessôa, Gustavo S.
Arruda, Marco A. Z.
Capelo-Martínez, José L.
Fdez-Riverola, Florentino
Glez-Peña, Daniel
Reboiro-Jato, Miguel
dc.subject.por.fl_str_mv Elemental distribution
LA-ICP-MS imaging
Laser ablation
Software
Computer Science Applications
Physical and Theoretical Chemistry
Computer Graphics and Computer-Aided Design
Library and Information Sciences
topic Elemental distribution
LA-ICP-MS imaging
Laser ablation
Software
Computer Science Applications
Physical and Theoretical Chemistry
Computer Graphics and Computer-Aided Design
Library and Information Sciences
description The authors thank the Fundacao de Amparo a Pesquisa do Estado de Sao Paulo (FAPESP, Sao Paulo, Brazil), the Conselho Nacional de Desenvolvimento Cientifico e Tecnologico (CNPq, Brasilia, Brazil), the Coordenacao de Aperfeicoamento de Pessoal de Nivel Superior (CAPES, Brasilia, Brazil), and the INOU-16-05 project from the Provincial Council of Ourense for financial support and fellowships. Dr. Capelo acknowledges support given by the Associate Laboratory for Green Chemistry LAQV which is financed by national funds from FCT/MEC (UID/QUI/50006/2013) and co-financed by the ERDF under the PT2020 Partnership Agreement (POCI-01-0145-FEDER-007265), and by the Unidade de Ciencias Biomoleculares Aplicadas-UCIBIO which is financed by national funds from FCT/MEC (UID/Multi/04378/2013) and co-financed by the ERDF under the PT2020 Partnership Agreement (POCI-01-0145-FEDER-007728). H. Lopez-Fernandez is supported by a postdoctoral fellowship from Xunta de Galicia. SING group thanks CITI (Centro de Investigacion, Transferencia e Innovacion) from University of Vigo for hosting its IT infrastructure.
publishDate 2016
dc.date.none.fl_str_mv 2016-11-18
2016-11-18T00:00:00Z
2018-05-09T22:17:34Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv https://doi.org/10.1186/s13321-016-0178-7
url https://doi.org/10.1186/s13321-016-0178-7
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv 1758-2946
PURE: 3866898
http://www.scopus.com/inward/record.url?scp=84995543426&partnerID=8YFLogxK
https://doi.org/10.1186/s13321-016-0178-7
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
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application/pdf
dc.source.none.fl_str_mv reponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
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instacron:RCAAP
instname_str Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
instacron_str RCAAP
institution RCAAP
reponame_str Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
collection Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
repository.name.fl_str_mv Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
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