Big DNA datasets analysis under push down automata

• Autor(a) principal: Md. Sarwar Kamal
• Data de Publicação: 2018
• Outros Autores: Munesh Chandra Trivedi, Jannat Binta Alam, Nilanjan Dey, Amira S. Ashour, Fuqian Shi, João Manuel R. S. Tavares
• Tipo de documento: Artigo
• Idioma: eng
• Título da fonte: Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
• Texto Completo: https://hdl.handle.net/10216/115741
• topic: Ciências da Saúde, Ciências médicas e da saúde; Health sciences, Medical and Health sciences

Consensus is a significant part that supports the identification of unknown information about animals, plants and insects around the globe. It represents a small part of Deoxyribonucleic acid (DNA) known as the DNA segment that carries all the information for investigation and verification. However, excessive datasets are the major challenges to mine the accurate meaning of the experiments. The datasets are increasing exponentially in ever seconds. In the present article, a memory saving consensus finding approach is organized. The principal component analysis (PCA) and independent component (ICA) are used to pre-process the training datasets. A comparison is carried out between these approaches with the Apriori algorithm. Furthermore, the push down automat (PDA) is applied for superior memory utilization. It iteratively frees the memory for storing targeted consensus by removing all the datasets that are not matched with the consensus. Afterward, the Apriori algorithm selects the desired consensus from limited values that are stored by the PDA. Finally, the Gauss-Seidel method is used to verify the consensus mathematically.