Characterization of NS5A and NS5B Resistance-Associated Substitutions from Genotype 1 Hepatitis C Virus Infected Patients in a Portuguese Cohort

Detalhes bibliográficos
Autor(a) principal: Ruben, Brandão
Data de Publicação: 2018
Outros Autores: Rute, Marcelino, Goncalves, Maria de Fátima, Diogo, Isabel, Carvalho, A P, Cabanas, Joaquim, Costa, Inês, Brogueira, Pedro, Ventura, F, Miranda , Ana Cláudia, Mansinho, Kamal, Gomes, P
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
Texto Completo: http://hdl.handle.net/10362/116851
Resumo: This study is focused on the prevalent NS5 coding region resistance-associated substitutions (RASs) in DAA-naive genotype (GT)1 HCV-infected patients and their potential impact on success rates. Plasma RNA from 81 GT1 HCV-infected patients was extracted prior to an in-house nested RT-PCR of the NS5 coding region, which is followed by Sanger population sequencing. NS5A RASs were present in 28.4% (23/81) of all GT1-infected patients with 9.9% (8/81) having the Y93C/H mutation. NS5B RASs showed a prevalence of 14.8% (12/81) and were only detected in GT1b. Overall 38.3% (31/81) of all GT1 HCV-infected patients presented baseline RASs. The obtained data supports the usefulness of resistance testing prior to treatment since a statistically significant association was found between treatment failure and the baseline presence of specific NS5 RASs known as Y93C/H (p = 0.04).
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spelling Characterization of NS5A and NS5B Resistance-Associated Substitutions from Genotype 1 Hepatitis C Virus Infected Patients in a Portuguese CohortDirect-acting antiviralsHepatitis C virusNS5ANS5BResistance-associated substitutionsSDG 3 - Good Health and Well-beingThis study is focused on the prevalent NS5 coding region resistance-associated substitutions (RASs) in DAA-naive genotype (GT)1 HCV-infected patients and their potential impact on success rates. Plasma RNA from 81 GT1 HCV-infected patients was extracted prior to an in-house nested RT-PCR of the NS5 coding region, which is followed by Sanger population sequencing. NS5A RASs were present in 28.4% (23/81) of all GT1-infected patients with 9.9% (8/81) having the Y93C/H mutation. NS5B RASs showed a prevalence of 14.8% (12/81) and were only detected in GT1b. Overall 38.3% (31/81) of all GT1 HCV-infected patients presented baseline RASs. The obtained data supports the usefulness of resistance testing prior to treatment since a statistically significant association was found between treatment failure and the baseline presence of specific NS5 RASs known as Y93C/H (p = 0.04).TB, HIV and opportunistic diseases and pathogens (THOP)Global Health and Tropical Medicine (GHTM)Instituto de Higiene e Medicina Tropical (IHMT)NOVA Medical School|Faculdade de Ciências Médicas (NMS|FCM)RUNRuben, Brandão,Rute, Marcelino,Goncalves, Maria de FátimaDiogo, IsabelCarvalho, A PCabanas, JoaquimCosta, InêsBrogueira, PedroVentura, FMiranda , Ana CláudiaMansinho, KamalGomes, P2021-05-03T22:39:26Z2018-04-262018-04-26T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/article14application/pdfhttp://hdl.handle.net/10362/116851eng1999-4915PURE: 6140247https://doi.org/10.3390/v10050223info:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2024-03-11T04:59:38Zoai:run.unl.pt:10362/116851Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-20T03:43:19.158994Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse
dc.title.none.fl_str_mv Characterization of NS5A and NS5B Resistance-Associated Substitutions from Genotype 1 Hepatitis C Virus Infected Patients in a Portuguese Cohort
title Characterization of NS5A and NS5B Resistance-Associated Substitutions from Genotype 1 Hepatitis C Virus Infected Patients in a Portuguese Cohort
spellingShingle Characterization of NS5A and NS5B Resistance-Associated Substitutions from Genotype 1 Hepatitis C Virus Infected Patients in a Portuguese Cohort
Ruben, Brandão,
Direct-acting antivirals
Hepatitis C virus
NS5A
NS5B
Resistance-associated substitutions
SDG 3 - Good Health and Well-being
title_short Characterization of NS5A and NS5B Resistance-Associated Substitutions from Genotype 1 Hepatitis C Virus Infected Patients in a Portuguese Cohort
title_full Characterization of NS5A and NS5B Resistance-Associated Substitutions from Genotype 1 Hepatitis C Virus Infected Patients in a Portuguese Cohort
title_fullStr Characterization of NS5A and NS5B Resistance-Associated Substitutions from Genotype 1 Hepatitis C Virus Infected Patients in a Portuguese Cohort
title_full_unstemmed Characterization of NS5A and NS5B Resistance-Associated Substitutions from Genotype 1 Hepatitis C Virus Infected Patients in a Portuguese Cohort
title_sort Characterization of NS5A and NS5B Resistance-Associated Substitutions from Genotype 1 Hepatitis C Virus Infected Patients in a Portuguese Cohort
author Ruben, Brandão,
author_facet Ruben, Brandão,
Rute, Marcelino,
Goncalves, Maria de Fátima
Diogo, Isabel
Carvalho, A P
Cabanas, Joaquim
Costa, Inês
Brogueira, Pedro
Ventura, F
Miranda , Ana Cláudia
Mansinho, Kamal
Gomes, P
author_role author
author2 Rute, Marcelino,
Goncalves, Maria de Fátima
Diogo, Isabel
Carvalho, A P
Cabanas, Joaquim
Costa, Inês
Brogueira, Pedro
Ventura, F
Miranda , Ana Cláudia
Mansinho, Kamal
Gomes, P
author2_role author
author
author
author
author
author
author
author
author
author
author
dc.contributor.none.fl_str_mv TB, HIV and opportunistic diseases and pathogens (THOP)
Global Health and Tropical Medicine (GHTM)
Instituto de Higiene e Medicina Tropical (IHMT)
NOVA Medical School|Faculdade de Ciências Médicas (NMS|FCM)
RUN
dc.contributor.author.fl_str_mv Ruben, Brandão,
Rute, Marcelino,
Goncalves, Maria de Fátima
Diogo, Isabel
Carvalho, A P
Cabanas, Joaquim
Costa, Inês
Brogueira, Pedro
Ventura, F
Miranda , Ana Cláudia
Mansinho, Kamal
Gomes, P
dc.subject.por.fl_str_mv Direct-acting antivirals
Hepatitis C virus
NS5A
NS5B
Resistance-associated substitutions
SDG 3 - Good Health and Well-being
topic Direct-acting antivirals
Hepatitis C virus
NS5A
NS5B
Resistance-associated substitutions
SDG 3 - Good Health and Well-being
description This study is focused on the prevalent NS5 coding region resistance-associated substitutions (RASs) in DAA-naive genotype (GT)1 HCV-infected patients and their potential impact on success rates. Plasma RNA from 81 GT1 HCV-infected patients was extracted prior to an in-house nested RT-PCR of the NS5 coding region, which is followed by Sanger population sequencing. NS5A RASs were present in 28.4% (23/81) of all GT1-infected patients with 9.9% (8/81) having the Y93C/H mutation. NS5B RASs showed a prevalence of 14.8% (12/81) and were only detected in GT1b. Overall 38.3% (31/81) of all GT1 HCV-infected patients presented baseline RASs. The obtained data supports the usefulness of resistance testing prior to treatment since a statistically significant association was found between treatment failure and the baseline presence of specific NS5 RASs known as Y93C/H (p = 0.04).
publishDate 2018
dc.date.none.fl_str_mv 2018-04-26
2018-04-26T00:00:00Z
2021-05-03T22:39:26Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://hdl.handle.net/10362/116851
url http://hdl.handle.net/10362/116851
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv 1999-4915
PURE: 6140247
https://doi.org/10.3390/v10050223
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv 14
application/pdf
dc.source.none.fl_str_mv reponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
instacron:RCAAP
instname_str Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
instacron_str RCAAP
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reponame_str Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
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