How genomics can help biodiversity conservation

Detalhes bibliográficos
Autor(a) principal: Theissinger, Kathrin
Data de Publicação: 2023
Outros Autores: Fernandes, Carlos, Formenti, Giulio, Bista, Iliana, Berg, Paul R., Bleidorn, Christoph, Bombarely, Aureliano, Crottini, Angelica, Gallo, Guido R., Godoy, José A., Jentoft, Sissel, Malukiewicz, Joanna, Mouton, Alice, Oomen, Rebekah A., Paez, Sadye, Palsbøll, Per J., Pampoulie, Christophe, Ruiz-López, María J., Secomandi, Simona, Svardal, Hannes, Theofanopoulou, Constantina, De Vries, Jan, Waldvogel, Ann-Marie, Zhang, Guojie, Jarvis, Erich D., Bálint, Miklós, CIOFI, CLAUDIO, Waterhouse, Robert M., Mazzoni, Camila J., Höglund, Jacob, Aghayan, Sargis A., Alioto, Tyler, Amorim do Rosário, Isabel, Alvarez, Nadir, Alves, Paulo C., Antunes, Agostinho, Arribas, Paula, Baldrian, Petr, Bertorelle, Giorgio, Böhne, Astrid, Bonisoli Alquati, Andrea, Boštjančić, Ljudevit L., Boussau, Bastien, Breton, Catherine M., Buzan, Elena, Campos, Paula F., Carreras, Carlos, Castro, Luis Filipe, Chueca, Luis J., Čiampor, Fedor, Conti, Elena, Cook-Deegan, Robert, Croll, Daniel, Cunha, Mónica V., Delsuc, Frédéric, Dennis, Alice B., Dimitrov, Dimitar, Faria, Rui, Favre, Adrien, Fedrigo, Olivier D., Fernández, Rosa, Ficetola, Gentile, Flot, Jean-François, Gabaldón, Toni, Agius, Dolores R., Giani, Alice M., Gilbert, M Thomas P, Grebenc, Tine, Guschanski, Katerina, Guyot, Romain, Hausdorf, Bernhard, Hawlitschek, Oliver, Heintzman, Peter D., Heinze, Berthold, Hiller, Michael, Husemann, Martin, Iannucci, Alessio, Irisarri, Iker, Jakobsen, Kjetill S., Klinga, Peter, Kloch, Agnieszka, Kratochwil, Claudius F, Kusche, Henrik, Layton, Kara K.S., Leonard, Jennifer A., LERAT, Emmanuelle, Liti, Gianni, Manousaki, Tereza, Marques-Bonet, Tomas, Matos-Maraví, Pável, Matschiner, Michael, Maumus, Florian, Mc Cartney, Ann M., Meiri, Shai, Melo-Ferreira, José, Mengual, Ximo, Monaghan, Michael T., Montagna, Matteo, Mysłajek, Robert, Neiber, Marco T., Nicolas, Violaine, Novo, Marta, Ozretić, Petar, Palero, Ferran, Pârvulescu, Lucian, Pascual, Marta, Paulo, Octávio S., Pavlek, Martina, Pegueroles, Cinta, Pellissier, Loïc, Pesole, Graziano, Primmer, Craig R., Riesgo, Ana, Rüber, Lukas, RUBOLINI, DIEGO, Salvi, Daniele, Seehausen, Ole, Seidel, Matthias, Studer, Bruno, Theodoridis, Spyros, Thines, Marco, Urban, Lara, Vasemägi, Anti, Vella, Adriana, Vella, Noel, Vernes, Sonja C., Vernesi, Cristiano, Vieites, David R., Wheat, Christopher W., Wörheide, Gert, Wurm, Yannick, Zammit, Gabrielle
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
Texto Completo: http://hdl.handle.net/10400.3/6855
Resumo: ABSTRACT: The availability of public genomic resources can greatly assist biodiversity assessment, conservation, and restoration efforts by providing evidence for scientifically informed management decisions. Here we survey the main approaches and applications in biodiversity and conservation genomics, considering practical factors, such as cost, time, prerequisite skills, and current shortcomings of applications. Most approaches perform best in combination with reference genomes from the target species or closely related species. We review case studies to illustrate how reference genomes can facilitate biodiversity research and conservation across the tree of life. We conclude that the time is ripe to view reference genomes as fundamental resources and to integrate their use as a best practice in conservation genomics.
id RCAP_415e6a0e0ad5c8c311c82fba037c71a0
oai_identifier_str oai:repositorio.uac.pt:10400.3/6855
network_acronym_str RCAP
network_name_str Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
repository_id_str 7160
spelling How genomics can help biodiversity conservationBiodiversityGenómicaConservationERGAABSTRACT: The availability of public genomic resources can greatly assist biodiversity assessment, conservation, and restoration efforts by providing evidence for scientifically informed management decisions. Here we survey the main approaches and applications in biodiversity and conservation genomics, considering practical factors, such as cost, time, prerequisite skills, and current shortcomings of applications. Most approaches perform best in combination with reference genomes from the target species or closely related species. We review case studies to illustrate how reference genomes can facilitate biodiversity research and conservation across the tree of life. We conclude that the time is ripe to view reference genomes as fundamental resources and to integrate their use as a best practice in conservation genomics.Cell PressRepositório da Universidade dos AçoresTheissinger, KathrinFernandes, CarlosFormenti, GiulioBista, IlianaBerg, Paul R.Bleidorn, ChristophBombarely, AurelianoCrottini, AngelicaGallo, Guido R.Godoy, José A.Jentoft, SisselMalukiewicz, JoannaMouton, AliceOomen, Rebekah A.Paez, SadyePalsbøll, Per J.Pampoulie, ChristopheRuiz-López, María J.Secomandi, SimonaSvardal, HannesTheofanopoulou, ConstantinaDe Vries, JanWaldvogel, Ann-MarieZhang, GuojieJarvis, Erich D.Bálint, MiklósCIOFI, CLAUDIOWaterhouse, Robert M.Mazzoni, Camila J.Höglund, JacobAghayan, Sargis A.Alioto, TylerAmorim do Rosário, IsabelAmorim do Rosário, IsabelAlvarez, NadirAlves, Paulo C.Amorim do Rosário, IsabelAmorim do Rosário, IsabelAntunes, AgostinhoArribas, PaulaBaldrian, PetrBertorelle, GiorgioBöhne, AstridBonisoli Alquati, AndreaBoštjančić, Ljudevit L.Boussau, BastienBreton, Catherine M.Buzan, ElenaCampos, Paula F.Carreras, CarlosCastro, Luis FilipeChueca, Luis J.Čiampor, FedorConti, ElenaCook-Deegan, RobertCroll, DanielCunha, Mónica V.Delsuc, FrédéricDennis, Alice B.Dimitrov, DimitarFaria, RuiFavre, AdrienFedrigo, Olivier D.Fernández, RosaFicetola, GentileFlot, Jean-FrançoisGabaldón, ToniAgius, Dolores R.Giani, Alice M.Gilbert, M Thomas PGrebenc, TineGuschanski, KaterinaGuyot, RomainHausdorf, BernhardHawlitschek, OliverHeintzman, Peter D.Heinze, BertholdHiller, MichaelHusemann, MartinIannucci, AlessioIrisarri, IkerJakobsen, Kjetill S.Klinga, PeterKloch, AgnieszkaKratochwil, Claudius FKusche, HenrikLayton, Kara K.S.Leonard, Jennifer A.LERAT, EmmanuelleLiti, GianniManousaki, TerezaMarques-Bonet, TomasMatos-Maraví, PávelMatschiner, MichaelMaumus, FlorianMc Cartney, Ann M.Meiri, ShaiMelo-Ferreira, JoséMengual, XimoMonaghan, Michael T.Montagna, MatteoMysłajek, RobertNeiber, Marco T.Nicolas, ViolaineNovo, MartaOzretić, PetarPalero, FerranPârvulescu, LucianPascual, MartaPaulo, Octávio S.Pavlek, MartinaPegueroles, CintaPellissier, LoïcPesole, GrazianoPrimmer, Craig R.Riesgo, AnaRüber, LukasRUBOLINI, DIEGOSalvi, DanieleSeehausen, OleSeidel, MatthiasStuder, BrunoTheodoridis, SpyrosThines, MarcoUrban, LaraVasemägi, AntiVella, AdrianaVella, NoelVernes, Sonja C.Vernesi, CristianoVieites, David R.Wheat, Christopher W.Wörheide, GertWurm, YannickZammit, Gabrielle2024-01-15T14:33:03Z2023-072023-07-01T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfhttp://hdl.handle.net/10400.3/6855engTheissinger, K., Fernandes, C., Formenti, G., Bista, I., Berg, P. R. ... Zammit, G. (2023). How genomics can help biodiversity conservation. "Trends in Genetics", 39(7), 545-559. DOI:10.1016/j.tig.2023.01.005 (IF2022 11,4; Q1 Genetics & Heredity)1362-455510.1016/j.tig.2023.01.005info:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2024-01-20T02:00:53Zoai:repositorio.uac.pt:10400.3/6855Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-20T01:52:22.194479Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse
dc.title.none.fl_str_mv How genomics can help biodiversity conservation
title How genomics can help biodiversity conservation
spellingShingle How genomics can help biodiversity conservation
Theissinger, Kathrin
Biodiversity
Genómica
Conservation
ERGA
title_short How genomics can help biodiversity conservation
title_full How genomics can help biodiversity conservation
title_fullStr How genomics can help biodiversity conservation
title_full_unstemmed How genomics can help biodiversity conservation
title_sort How genomics can help biodiversity conservation
author Theissinger, Kathrin
author_facet Theissinger, Kathrin
Fernandes, Carlos
Formenti, Giulio
Bista, Iliana
Berg, Paul R.
Bleidorn, Christoph
Bombarely, Aureliano
Crottini, Angelica
Gallo, Guido R.
Godoy, José A.
Jentoft, Sissel
Malukiewicz, Joanna
Mouton, Alice
Oomen, Rebekah A.
Paez, Sadye
Palsbøll, Per J.
Pampoulie, Christophe
Ruiz-López, María J.
Secomandi, Simona
Svardal, Hannes
Theofanopoulou, Constantina
De Vries, Jan
Waldvogel, Ann-Marie
Zhang, Guojie
Jarvis, Erich D.
Bálint, Miklós
CIOFI, CLAUDIO
Waterhouse, Robert M.
Mazzoni, Camila J.
Höglund, Jacob
Aghayan, Sargis A.
Alioto, Tyler
Amorim do Rosário, Isabel
Alvarez, Nadir
Alves, Paulo C.
Antunes, Agostinho
Arribas, Paula
Baldrian, Petr
Bertorelle, Giorgio
Böhne, Astrid
Bonisoli Alquati, Andrea
Boštjančić, Ljudevit L.
Boussau, Bastien
Breton, Catherine M.
Buzan, Elena
Campos, Paula F.
Carreras, Carlos
Castro, Luis Filipe
Chueca, Luis J.
Čiampor, Fedor
Conti, Elena
Cook-Deegan, Robert
Croll, Daniel
Cunha, Mónica V.
Delsuc, Frédéric
Dennis, Alice B.
Dimitrov, Dimitar
Faria, Rui
Favre, Adrien
Fedrigo, Olivier D.
Fernández, Rosa
Ficetola, Gentile
Flot, Jean-François
Gabaldón, Toni
Agius, Dolores R.
Giani, Alice M.
Gilbert, M Thomas P
Grebenc, Tine
Guschanski, Katerina
Guyot, Romain
Hausdorf, Bernhard
Hawlitschek, Oliver
Heintzman, Peter D.
Heinze, Berthold
Hiller, Michael
Husemann, Martin
Iannucci, Alessio
Irisarri, Iker
Jakobsen, Kjetill S.
Klinga, Peter
Kloch, Agnieszka
Kratochwil, Claudius F
Kusche, Henrik
Layton, Kara K.S.
Leonard, Jennifer A.
LERAT, Emmanuelle
Liti, Gianni
Manousaki, Tereza
Marques-Bonet, Tomas
Matos-Maraví, Pável
Matschiner, Michael
Maumus, Florian
Mc Cartney, Ann M.
Meiri, Shai
Melo-Ferreira, José
Mengual, Ximo
Monaghan, Michael T.
Montagna, Matteo
Mysłajek, Robert
Neiber, Marco T.
Nicolas, Violaine
Novo, Marta
Ozretić, Petar
Palero, Ferran
Pârvulescu, Lucian
Pascual, Marta
Paulo, Octávio S.
Pavlek, Martina
Pegueroles, Cinta
Pellissier, Loïc
Pesole, Graziano
Primmer, Craig R.
Riesgo, Ana
Rüber, Lukas
RUBOLINI, DIEGO
Salvi, Daniele
Seehausen, Ole
Seidel, Matthias
Studer, Bruno
Theodoridis, Spyros
Thines, Marco
Urban, Lara
Vasemägi, Anti
Vella, Adriana
Vella, Noel
Vernes, Sonja C.
Vernesi, Cristiano
Vieites, David R.
Wheat, Christopher W.
Wörheide, Gert
Wurm, Yannick
Zammit, Gabrielle
author_role author
author2 Fernandes, Carlos
Formenti, Giulio
Bista, Iliana
Berg, Paul R.
Bleidorn, Christoph
Bombarely, Aureliano
Crottini, Angelica
Gallo, Guido R.
Godoy, José A.
Jentoft, Sissel
Malukiewicz, Joanna
Mouton, Alice
Oomen, Rebekah A.
Paez, Sadye
Palsbøll, Per J.
Pampoulie, Christophe
Ruiz-López, María J.
Secomandi, Simona
Svardal, Hannes
Theofanopoulou, Constantina
De Vries, Jan
Waldvogel, Ann-Marie
Zhang, Guojie
Jarvis, Erich D.
Bálint, Miklós
CIOFI, CLAUDIO
Waterhouse, Robert M.
Mazzoni, Camila J.
Höglund, Jacob
Aghayan, Sargis A.
Alioto, Tyler
Amorim do Rosário, Isabel
Alvarez, Nadir
Alves, Paulo C.
Antunes, Agostinho
Arribas, Paula
Baldrian, Petr
Bertorelle, Giorgio
Böhne, Astrid
Bonisoli Alquati, Andrea
Boštjančić, Ljudevit L.
Boussau, Bastien
Breton, Catherine M.
Buzan, Elena
Campos, Paula F.
Carreras, Carlos
Castro, Luis Filipe
Chueca, Luis J.
Čiampor, Fedor
Conti, Elena
Cook-Deegan, Robert
Croll, Daniel
Cunha, Mónica V.
Delsuc, Frédéric
Dennis, Alice B.
Dimitrov, Dimitar
Faria, Rui
Favre, Adrien
Fedrigo, Olivier D.
Fernández, Rosa
Ficetola, Gentile
Flot, Jean-François
Gabaldón, Toni
Agius, Dolores R.
Giani, Alice M.
Gilbert, M Thomas P
Grebenc, Tine
Guschanski, Katerina
Guyot, Romain
Hausdorf, Bernhard
Hawlitschek, Oliver
Heintzman, Peter D.
Heinze, Berthold
Hiller, Michael
Husemann, Martin
Iannucci, Alessio
Irisarri, Iker
Jakobsen, Kjetill S.
Klinga, Peter
Kloch, Agnieszka
Kratochwil, Claudius F
Kusche, Henrik
Layton, Kara K.S.
Leonard, Jennifer A.
LERAT, Emmanuelle
Liti, Gianni
Manousaki, Tereza
Marques-Bonet, Tomas
Matos-Maraví, Pável
Matschiner, Michael
Maumus, Florian
Mc Cartney, Ann M.
Meiri, Shai
Melo-Ferreira, José
Mengual, Ximo
Monaghan, Michael T.
Montagna, Matteo
Mysłajek, Robert
Neiber, Marco T.
Nicolas, Violaine
Novo, Marta
Ozretić, Petar
Palero, Ferran
Pârvulescu, Lucian
Pascual, Marta
Paulo, Octávio S.
Pavlek, Martina
Pegueroles, Cinta
Pellissier, Loïc
Pesole, Graziano
Primmer, Craig R.
Riesgo, Ana
Rüber, Lukas
RUBOLINI, DIEGO
Salvi, Daniele
Seehausen, Ole
Seidel, Matthias
Studer, Bruno
Theodoridis, Spyros
Thines, Marco
Urban, Lara
Vasemägi, Anti
Vella, Adriana
Vella, Noel
Vernes, Sonja C.
Vernesi, Cristiano
Vieites, David R.
Wheat, Christopher W.
Wörheide, Gert
Wurm, Yannick
Zammit, Gabrielle
author2_role author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
dc.contributor.none.fl_str_mv Repositório da Universidade dos Açores
dc.contributor.author.fl_str_mv Theissinger, Kathrin
Fernandes, Carlos
Formenti, Giulio
Bista, Iliana
Berg, Paul R.
Bleidorn, Christoph
Bombarely, Aureliano
Crottini, Angelica
Gallo, Guido R.
Godoy, José A.
Jentoft, Sissel
Malukiewicz, Joanna
Mouton, Alice
Oomen, Rebekah A.
Paez, Sadye
Palsbøll, Per J.
Pampoulie, Christophe
Ruiz-López, María J.
Secomandi, Simona
Svardal, Hannes
Theofanopoulou, Constantina
De Vries, Jan
Waldvogel, Ann-Marie
Zhang, Guojie
Jarvis, Erich D.
Bálint, Miklós
CIOFI, CLAUDIO
Waterhouse, Robert M.
Mazzoni, Camila J.
Höglund, Jacob
Aghayan, Sargis A.
Alioto, Tyler
Amorim do Rosário, Isabel
Amorim do Rosário, Isabel
Alvarez, Nadir
Alves, Paulo C.
Amorim do Rosário, Isabel
Amorim do Rosário, Isabel
Antunes, Agostinho
Arribas, Paula
Baldrian, Petr
Bertorelle, Giorgio
Böhne, Astrid
Bonisoli Alquati, Andrea
Boštjančić, Ljudevit L.
Boussau, Bastien
Breton, Catherine M.
Buzan, Elena
Campos, Paula F.
Carreras, Carlos
Castro, Luis Filipe
Chueca, Luis J.
Čiampor, Fedor
Conti, Elena
Cook-Deegan, Robert
Croll, Daniel
Cunha, Mónica V.
Delsuc, Frédéric
Dennis, Alice B.
Dimitrov, Dimitar
Faria, Rui
Favre, Adrien
Fedrigo, Olivier D.
Fernández, Rosa
Ficetola, Gentile
Flot, Jean-François
Gabaldón, Toni
Agius, Dolores R.
Giani, Alice M.
Gilbert, M Thomas P
Grebenc, Tine
Guschanski, Katerina
Guyot, Romain
Hausdorf, Bernhard
Hawlitschek, Oliver
Heintzman, Peter D.
Heinze, Berthold
Hiller, Michael
Husemann, Martin
Iannucci, Alessio
Irisarri, Iker
Jakobsen, Kjetill S.
Klinga, Peter
Kloch, Agnieszka
Kratochwil, Claudius F
Kusche, Henrik
Layton, Kara K.S.
Leonard, Jennifer A.
LERAT, Emmanuelle
Liti, Gianni
Manousaki, Tereza
Marques-Bonet, Tomas
Matos-Maraví, Pável
Matschiner, Michael
Maumus, Florian
Mc Cartney, Ann M.
Meiri, Shai
Melo-Ferreira, José
Mengual, Ximo
Monaghan, Michael T.
Montagna, Matteo
Mysłajek, Robert
Neiber, Marco T.
Nicolas, Violaine
Novo, Marta
Ozretić, Petar
Palero, Ferran
Pârvulescu, Lucian
Pascual, Marta
Paulo, Octávio S.
Pavlek, Martina
Pegueroles, Cinta
Pellissier, Loïc
Pesole, Graziano
Primmer, Craig R.
Riesgo, Ana
Rüber, Lukas
RUBOLINI, DIEGO
Salvi, Daniele
Seehausen, Ole
Seidel, Matthias
Studer, Bruno
Theodoridis, Spyros
Thines, Marco
Urban, Lara
Vasemägi, Anti
Vella, Adriana
Vella, Noel
Vernes, Sonja C.
Vernesi, Cristiano
Vieites, David R.
Wheat, Christopher W.
Wörheide, Gert
Wurm, Yannick
Zammit, Gabrielle
dc.subject.por.fl_str_mv Biodiversity
Genómica
Conservation
ERGA
topic Biodiversity
Genómica
Conservation
ERGA
description ABSTRACT: The availability of public genomic resources can greatly assist biodiversity assessment, conservation, and restoration efforts by providing evidence for scientifically informed management decisions. Here we survey the main approaches and applications in biodiversity and conservation genomics, considering practical factors, such as cost, time, prerequisite skills, and current shortcomings of applications. Most approaches perform best in combination with reference genomes from the target species or closely related species. We review case studies to illustrate how reference genomes can facilitate biodiversity research and conservation across the tree of life. We conclude that the time is ripe to view reference genomes as fundamental resources and to integrate their use as a best practice in conservation genomics.
publishDate 2023
dc.date.none.fl_str_mv 2023-07
2023-07-01T00:00:00Z
2024-01-15T14:33:03Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://hdl.handle.net/10400.3/6855
url http://hdl.handle.net/10400.3/6855
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Theissinger, K., Fernandes, C., Formenti, G., Bista, I., Berg, P. R. ... Zammit, G. (2023). How genomics can help biodiversity conservation. "Trends in Genetics", 39(7), 545-559. DOI:10.1016/j.tig.2023.01.005 (IF2022 11,4; Q1 Genetics & Heredity)
1362-4555
10.1016/j.tig.2023.01.005
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Cell Press
publisher.none.fl_str_mv Cell Press
dc.source.none.fl_str_mv reponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
instacron:RCAAP
instname_str Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
instacron_str RCAAP
institution RCAAP
reponame_str Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
collection Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
repository.name.fl_str_mv Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
repository.mail.fl_str_mv
_version_ 1799137014893772800