Discrimination of Brazilian propolis according to the seasoning using chemometrics and machine learning based on UV-Vis scanning data

Detalhes bibliográficos
Autor(a) principal: Tomazzoli, Maíra Maciel
Data de Publicação: 2015
Outros Autores: Neto, Remi Dal Pai, Moresco, Rodolfo, Westphal, Larissa, Zeggio, Amélia Regina Somensi, Specht, Leandro, Costa, Christopher, Rocha, Miguel, Maraschin, Marcelo
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
Texto Completo: http://hdl.handle.net/1822/38890
Resumo: Propolis is a chemically complex biomass produced by honeybees (Apis mellifera) from plant resins added of salivary enzymes, beeswax, and pollen. The biological activities described for propolis were also identified for donor plants resin, but a big challenge for the standardization of the chemical composition and biological effects of propolis remains on a better understanding of the influence of seasonality on the chemical constituents of that raw material. Since propolis quality depends, among other variables, on the local flora which is strongly influenced by (a)biotic factors over the seasons, to unravel the harvest season effect on the propolis chemical profile is an issue of recognized importance. For that, fast, cheap, and robust analytical techniques seem to be the best choice for large scale quality control processes in the most demanding markets, e.g., human health applications. For that, UV-Visible (UV-Vis) scanning spectrophotometry of hydroalcoholic extracts (HE) of seventy-three propolis samples, collected over the seasons in 2014 (summer, spring, autumn, and winter) and 2015 (summer and autumn) in Southern Brazil was adopted. Further machine learning and chemometrics techniques were applied to the UV-Vis dataset aiming to gain insights as to the seasonality effect on the claimed chemical heterogeneity of propolis samples determined by changes in the flora of the geographic region under study. Descriptive and classification models were built following a chemometric approach, i.e. principal component analysis (PCA) and hierarchical clustering analysis (HCA) supported by scripts written in the R language. The UV-Vis profiles associated with chemometric analysis allowed identifying a typical pattern in propolis samples collected in the summer. Importantly, the discrimination based on PCA could be improved by using the dataset of the fingerprint region of phenolic compounds ( = 280-400m), suggesting that besides the biological activities of those secondary metabolites, they also play a relevant role for the discrimination and classification of that complex matrix through bioinformatics tools. Finally, a series of machine learning approaches, e.g., partial least square-discriminant analysis (PLS-DA), k-Nearest Neighbors (kNN), and Decision Trees showed to be complementary to PCA and HCA, allowing to obtain relevant information as to the sample discrimination.
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spelling Discrimination of Brazilian propolis according to the seasoning using chemometrics and machine learning based on UV-Vis scanning dataPropolisUV-Vis scanning spectrophotometrychemometricsmetabolic profilebotanical sourceseasonalityScience & TechnologyPropolis is a chemically complex biomass produced by honeybees (Apis mellifera) from plant resins added of salivary enzymes, beeswax, and pollen. The biological activities described for propolis were also identified for donor plants resin, but a big challenge for the standardization of the chemical composition and biological effects of propolis remains on a better understanding of the influence of seasonality on the chemical constituents of that raw material. Since propolis quality depends, among other variables, on the local flora which is strongly influenced by (a)biotic factors over the seasons, to unravel the harvest season effect on the propolis chemical profile is an issue of recognized importance. For that, fast, cheap, and robust analytical techniques seem to be the best choice for large scale quality control processes in the most demanding markets, e.g., human health applications. For that, UV-Visible (UV-Vis) scanning spectrophotometry of hydroalcoholic extracts (HE) of seventy-three propolis samples, collected over the seasons in 2014 (summer, spring, autumn, and winter) and 2015 (summer and autumn) in Southern Brazil was adopted. Further machine learning and chemometrics techniques were applied to the UV-Vis dataset aiming to gain insights as to the seasonality effect on the claimed chemical heterogeneity of propolis samples determined by changes in the flora of the geographic region under study. Descriptive and classification models were built following a chemometric approach, i.e. principal component analysis (PCA) and hierarchical clustering analysis (HCA) supported by scripts written in the R language. The UV-Vis profiles associated with chemometric analysis allowed identifying a typical pattern in propolis samples collected in the summer. Importantly, the discrimination based on PCA could be improved by using the dataset of the fingerprint region of phenolic compounds ( = 280-400m), suggesting that besides the biological activities of those secondary metabolites, they also play a relevant role for the discrimination and classification of that complex matrix through bioinformatics tools. Finally, a series of machine learning approaches, e.g., partial least square-discriminant analysis (PLS-DA), k-Nearest Neighbors (kNN), and Decision Trees showed to be complementary to PCA and HCA, allowing to obtain relevant information as to the sample discrimination.Financial support and the research fellowship to the later author from CNPq (Conselho Nacional de Desenvolvimento Científico e Tecnológico) are acknowledged. The work is partially funded by Project PropMine, funded by the agreement between Portuguese FCT and Brazilian CNPq. The authors also thank the FCT Strategic Project of UID/BIO/04469/2013 unitDe Gruyter OpenUniversidade do MinhoTomazzoli, Maíra MacielNeto, Remi Dal PaiMoresco, RodolfoWestphal, LarissaZeggio, Amélia Regina SomensiSpecht, LeandroCosta, ChristopherRocha, MiguelMaraschin, Marcelo2015-10-212015-10-21T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfhttp://hdl.handle.net/1822/38890engTomazzoli, Maíra Maciel; Neto, Remi Dal Pai; Moresco, Rodolfo; Westphal, Larissa; Zeggio, Amélia Regina Somensi; Specht, Leandro; Costa, Christopher; Rocha, Miguel; Maraschin, Marcelo, Discrimination of Brazilian propolis according to the seasoning using chemometrics and machine learning based on UV-Vis scanning data. Journal of Integrative Bioinformatics, 12(4), 279, 20151613-45161613-451610.2390/biecoll-jib-2015-279info:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2023-07-21T12:22:21Zoai:repositorium.sdum.uminho.pt:1822/38890Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-19T19:15:49.456726Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse
dc.title.none.fl_str_mv Discrimination of Brazilian propolis according to the seasoning using chemometrics and machine learning based on UV-Vis scanning data
title Discrimination of Brazilian propolis according to the seasoning using chemometrics and machine learning based on UV-Vis scanning data
spellingShingle Discrimination of Brazilian propolis according to the seasoning using chemometrics and machine learning based on UV-Vis scanning data
Tomazzoli, Maíra Maciel
Propolis
UV-Vis scanning spectrophotometry
chemometrics
metabolic profile
botanical source
seasonality
Science & Technology
title_short Discrimination of Brazilian propolis according to the seasoning using chemometrics and machine learning based on UV-Vis scanning data
title_full Discrimination of Brazilian propolis according to the seasoning using chemometrics and machine learning based on UV-Vis scanning data
title_fullStr Discrimination of Brazilian propolis according to the seasoning using chemometrics and machine learning based on UV-Vis scanning data
title_full_unstemmed Discrimination of Brazilian propolis according to the seasoning using chemometrics and machine learning based on UV-Vis scanning data
title_sort Discrimination of Brazilian propolis according to the seasoning using chemometrics and machine learning based on UV-Vis scanning data
author Tomazzoli, Maíra Maciel
author_facet Tomazzoli, Maíra Maciel
Neto, Remi Dal Pai
Moresco, Rodolfo
Westphal, Larissa
Zeggio, Amélia Regina Somensi
Specht, Leandro
Costa, Christopher
Rocha, Miguel
Maraschin, Marcelo
author_role author
author2 Neto, Remi Dal Pai
Moresco, Rodolfo
Westphal, Larissa
Zeggio, Amélia Regina Somensi
Specht, Leandro
Costa, Christopher
Rocha, Miguel
Maraschin, Marcelo
author2_role author
author
author
author
author
author
author
author
dc.contributor.none.fl_str_mv Universidade do Minho
dc.contributor.author.fl_str_mv Tomazzoli, Maíra Maciel
Neto, Remi Dal Pai
Moresco, Rodolfo
Westphal, Larissa
Zeggio, Amélia Regina Somensi
Specht, Leandro
Costa, Christopher
Rocha, Miguel
Maraschin, Marcelo
dc.subject.por.fl_str_mv Propolis
UV-Vis scanning spectrophotometry
chemometrics
metabolic profile
botanical source
seasonality
Science & Technology
topic Propolis
UV-Vis scanning spectrophotometry
chemometrics
metabolic profile
botanical source
seasonality
Science & Technology
description Propolis is a chemically complex biomass produced by honeybees (Apis mellifera) from plant resins added of salivary enzymes, beeswax, and pollen. The biological activities described for propolis were also identified for donor plants resin, but a big challenge for the standardization of the chemical composition and biological effects of propolis remains on a better understanding of the influence of seasonality on the chemical constituents of that raw material. Since propolis quality depends, among other variables, on the local flora which is strongly influenced by (a)biotic factors over the seasons, to unravel the harvest season effect on the propolis chemical profile is an issue of recognized importance. For that, fast, cheap, and robust analytical techniques seem to be the best choice for large scale quality control processes in the most demanding markets, e.g., human health applications. For that, UV-Visible (UV-Vis) scanning spectrophotometry of hydroalcoholic extracts (HE) of seventy-three propolis samples, collected over the seasons in 2014 (summer, spring, autumn, and winter) and 2015 (summer and autumn) in Southern Brazil was adopted. Further machine learning and chemometrics techniques were applied to the UV-Vis dataset aiming to gain insights as to the seasonality effect on the claimed chemical heterogeneity of propolis samples determined by changes in the flora of the geographic region under study. Descriptive and classification models were built following a chemometric approach, i.e. principal component analysis (PCA) and hierarchical clustering analysis (HCA) supported by scripts written in the R language. The UV-Vis profiles associated with chemometric analysis allowed identifying a typical pattern in propolis samples collected in the summer. Importantly, the discrimination based on PCA could be improved by using the dataset of the fingerprint region of phenolic compounds ( = 280-400m), suggesting that besides the biological activities of those secondary metabolites, they also play a relevant role for the discrimination and classification of that complex matrix through bioinformatics tools. Finally, a series of machine learning approaches, e.g., partial least square-discriminant analysis (PLS-DA), k-Nearest Neighbors (kNN), and Decision Trees showed to be complementary to PCA and HCA, allowing to obtain relevant information as to the sample discrimination.
publishDate 2015
dc.date.none.fl_str_mv 2015-10-21
2015-10-21T00:00:00Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://hdl.handle.net/1822/38890
url http://hdl.handle.net/1822/38890
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Tomazzoli, Maíra Maciel; Neto, Remi Dal Pai; Moresco, Rodolfo; Westphal, Larissa; Zeggio, Amélia Regina Somensi; Specht, Leandro; Costa, Christopher; Rocha, Miguel; Maraschin, Marcelo, Discrimination of Brazilian propolis according to the seasoning using chemometrics and machine learning based on UV-Vis scanning data. Journal of Integrative Bioinformatics, 12(4), 279, 2015
1613-4516
1613-4516
10.2390/biecoll-jib-2015-279
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
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dc.publisher.none.fl_str_mv De Gruyter Open
publisher.none.fl_str_mv De Gruyter Open
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collection Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
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