Genetic association of CD247 (CD3ζ) with SLE in a large-scale multiethnic study
Autor(a) principal: | |
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Data de Publicação: | 2015 |
Outros Autores: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) |
Texto Completo: | http://hdl.handle.net/10400.7/678 |
Resumo: | A classic T-cell phenotype in systemic lupus erythematosus (SLE) is the downregulation and replacement of the CD3ζ chain that alters T-cell receptor signaling. However, genetic associations with SLE in the human CD247 locus that encodes CD3ζ are not well established and require replication in independent cohorts. Our aim was therefore to examine, localize and validate CD247-SLE association in a large multiethnic population. We typed 44 contiguous CD247 single-nucleotide polymorphisms (SNPs) in 8922 SLE patients and 8077 controls from four ethnically distinct populations. The strongest associations were found in the Asian population (11 SNPs in intron 1, 4.99 × 10(-4) < P < 4.15 × 10(-2)), where we further identified a five-marker haplotype (rs12141731-rs2949655-rs16859085-rs12144621-rs858554; G-G-A-G-A; P(hap) = 2.12 × 10(-5)) that exceeded the most associated single SNP rs858554 (minor allele frequency in controls = 13%; P = 4.99 × 10(-4), odds ratio = 1.32) in significance. Imputation and subsequent association analysis showed evidence of association (P < 0.05) at 27 additional SNPs within intron 1. Cross-ethnic meta-analysis, assuming an additive genetic model adjusted for population proportions, showed five SNPs with significant P-values (1.40 × 10(-3) < P< 3.97 × 10(-2)), with one (rs704848) remaining significant after Bonferroni correction (P(meta) = 2.66 × 10(-2)). Our study independently confirms and extends the association of SLE with CD247, which is shared by various autoimmune disorders and supports a common T-cell-mediated mechanism. |
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Genetic association of CD247 (CD3ζ) with SLE in a large-scale multiethnic studyAdultAntigens, CD3Asian Continental Ancestry GroupCase-Control StudiesEuropean Continental Ancestry GroupFemaleGenetic Association StudiesGenetic Predisposition to DiseaseHaplotypesHumansLupus Erythematosus, SystemicMalePolymorphism, Single NucleotideT-LymphocytesA classic T-cell phenotype in systemic lupus erythematosus (SLE) is the downregulation and replacement of the CD3ζ chain that alters T-cell receptor signaling. However, genetic associations with SLE in the human CD247 locus that encodes CD3ζ are not well established and require replication in independent cohorts. Our aim was therefore to examine, localize and validate CD247-SLE association in a large multiethnic population. We typed 44 contiguous CD247 single-nucleotide polymorphisms (SNPs) in 8922 SLE patients and 8077 controls from four ethnically distinct populations. The strongest associations were found in the Asian population (11 SNPs in intron 1, 4.99 × 10(-4) < P < 4.15 × 10(-2)), where we further identified a five-marker haplotype (rs12141731-rs2949655-rs16859085-rs12144621-rs858554; G-G-A-G-A; P(hap) = 2.12 × 10(-5)) that exceeded the most associated single SNP rs858554 (minor allele frequency in controls = 13%; P = 4.99 × 10(-4), odds ratio = 1.32) in significance. Imputation and subsequent association analysis showed evidence of association (P < 0.05) at 27 additional SNPs within intron 1. Cross-ethnic meta-analysis, assuming an additive genetic model adjusted for population proportions, showed five SNPs with significant P-values (1.40 × 10(-3) < P< 3.97 × 10(-2)), with one (rs704848) remaining significant after Bonferroni correction (P(meta) = 2.66 × 10(-2)). Our study independently confirms and extends the association of SLE with CD247, which is shared by various autoimmune disorders and supports a common T-cell-mediated mechanism.National Institutes of Health grants: (UL1RR025741, K24AR002138, P602AR30692, P01AR49084, UL1TR000165, P01AI083194, RO1AR43814, P60AR053308, UL1TR000004, AR43727, R21AI070304, RO1AR057172, UL1RR025014, R01AR051545-03, UL1RR029882, P60AR062755, P30AR53483, U19AI082714, P30GM103510, U01AI101934, AI063274, AR056360, AI083194, R37AI024717, P01083194, P01AR049084, PR094002); Northwestern University Feinberg School of Medicine; University of Alabama Birmingham; National Institute of Arthritis and Musculoskeletal and Skin Diseases; University of California Los Angeles; University of California San Francisco; Hopkins University; University of Colorado School of Medicine; University of Southern California; Seattle Children's Research Institute Arthritis Foundation; Medical University of South Carolina; Oklahoma Medical Research Foundation; Cincinnati Children's Hospital Medical Center; US Departments of Defense grant: (PR094002); Veterans Affairs; Alliance for Lupus Research; Kirkland Scholar Award; Korea Healthcare technology R & D project: (A121983); Ministry for Health and Welfare; Republic of Korea; Swedish Research Council; Instituto de Salud Carlos III grant: (PS09/00129); European Union FEDER funds; Fundação para a Ciência e Tecnologia fellowships: (SFRH/BPD/29354/2006, SFRH/BPD/34648/2007).Nature Publishing GroupARCAMartins, MWilliams, A HComeau, MMarion, MZiegler, J TFreedman, B IMerrill, J TGlenn, S BKelly, J ASivils, K MJames, J AGuthridge, J MAlarcón-Riquelme, M EBae, S-CKim, J-HKim, DAnaya, J-MBoackle, S ACriswell, L AKimberly, R PAlarcón, G SBrown, E EVilá, L MPetri, M ARamsey-Goldman, RNiewold, T BTsao, B PGilkeson, G SKamen, D LJacob, C OStevens, A MGaffney, P MHarley, J BLangefeld, C DFesel, C2016-07-08T12:20:50Z2015-032015-03-01T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfhttp://hdl.handle.net/10400.7/678engMartins, M., Williams, A. H., Comeau, M., Marion, M., Ziegler, J. T., Freedman, B. I., Merrill, J. T., Glenn, S. B., Kelly, J. A., Sivils, K. M., James, J. A., Guthridge, J. M., Alarcón-Riquelme, M. E., Bae, S.-C., Kim, J.-H., Kim, D., Anaya, J.-M., Boackle, S. A., Criswell, L. A., Kimberly, R. P., Alarcón, G. S., Brown, E. E., Vilá, L. M., Petri, M. A., Ramsey-Goldman, R., Niewold, T. B., Tsao, B. P., Gilkeson, G. S., Kamen, D. L., Jacob, C. O., Stevens, A. M., Gaffney, P. M., Harley, J. B., Langefeld, C. D., Fesel, C. (2015). Genetic association of CD247 (CD3ζ) with SLE in a large-scale multiethnic study. Genes Immun, 16(2), 142–150.10.1038/gene.2014.73info:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2022-11-29T14:35:04Zoai:arca.igc.gulbenkian.pt:10400.7/678Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-19T16:11:54.922181Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse |
dc.title.none.fl_str_mv |
Genetic association of CD247 (CD3ζ) with SLE in a large-scale multiethnic study |
title |
Genetic association of CD247 (CD3ζ) with SLE in a large-scale multiethnic study |
spellingShingle |
Genetic association of CD247 (CD3ζ) with SLE in a large-scale multiethnic study Martins, M Adult Antigens, CD3 Asian Continental Ancestry Group Case-Control Studies European Continental Ancestry Group Female Genetic Association Studies Genetic Predisposition to Disease Haplotypes Humans Lupus Erythematosus, Systemic Male Polymorphism, Single Nucleotide T-Lymphocytes |
title_short |
Genetic association of CD247 (CD3ζ) with SLE in a large-scale multiethnic study |
title_full |
Genetic association of CD247 (CD3ζ) with SLE in a large-scale multiethnic study |
title_fullStr |
Genetic association of CD247 (CD3ζ) with SLE in a large-scale multiethnic study |
title_full_unstemmed |
Genetic association of CD247 (CD3ζ) with SLE in a large-scale multiethnic study |
title_sort |
Genetic association of CD247 (CD3ζ) with SLE in a large-scale multiethnic study |
author |
Martins, M |
author_facet |
Martins, M Williams, A H Comeau, M Marion, M Ziegler, J T Freedman, B I Merrill, J T Glenn, S B Kelly, J A Sivils, K M James, J A Guthridge, J M Alarcón-Riquelme, M E Bae, S-C Kim, J-H Kim, D Anaya, J-M Boackle, S A Criswell, L A Kimberly, R P Alarcón, G S Brown, E E Vilá, L M Petri, M A Ramsey-Goldman, R Niewold, T B Tsao, B P Gilkeson, G S Kamen, D L Jacob, C O Stevens, A M Gaffney, P M Harley, J B Langefeld, C D Fesel, C |
author_role |
author |
author2 |
Williams, A H Comeau, M Marion, M Ziegler, J T Freedman, B I Merrill, J T Glenn, S B Kelly, J A Sivils, K M James, J A Guthridge, J M Alarcón-Riquelme, M E Bae, S-C Kim, J-H Kim, D Anaya, J-M Boackle, S A Criswell, L A Kimberly, R P Alarcón, G S Brown, E E Vilá, L M Petri, M A Ramsey-Goldman, R Niewold, T B Tsao, B P Gilkeson, G S Kamen, D L Jacob, C O Stevens, A M Gaffney, P M Harley, J B Langefeld, C D Fesel, C |
author2_role |
author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author |
dc.contributor.none.fl_str_mv |
ARCA |
dc.contributor.author.fl_str_mv |
Martins, M Williams, A H Comeau, M Marion, M Ziegler, J T Freedman, B I Merrill, J T Glenn, S B Kelly, J A Sivils, K M James, J A Guthridge, J M Alarcón-Riquelme, M E Bae, S-C Kim, J-H Kim, D Anaya, J-M Boackle, S A Criswell, L A Kimberly, R P Alarcón, G S Brown, E E Vilá, L M Petri, M A Ramsey-Goldman, R Niewold, T B Tsao, B P Gilkeson, G S Kamen, D L Jacob, C O Stevens, A M Gaffney, P M Harley, J B Langefeld, C D Fesel, C |
dc.subject.por.fl_str_mv |
Adult Antigens, CD3 Asian Continental Ancestry Group Case-Control Studies European Continental Ancestry Group Female Genetic Association Studies Genetic Predisposition to Disease Haplotypes Humans Lupus Erythematosus, Systemic Male Polymorphism, Single Nucleotide T-Lymphocytes |
topic |
Adult Antigens, CD3 Asian Continental Ancestry Group Case-Control Studies European Continental Ancestry Group Female Genetic Association Studies Genetic Predisposition to Disease Haplotypes Humans Lupus Erythematosus, Systemic Male Polymorphism, Single Nucleotide T-Lymphocytes |
description |
A classic T-cell phenotype in systemic lupus erythematosus (SLE) is the downregulation and replacement of the CD3ζ chain that alters T-cell receptor signaling. However, genetic associations with SLE in the human CD247 locus that encodes CD3ζ are not well established and require replication in independent cohorts. Our aim was therefore to examine, localize and validate CD247-SLE association in a large multiethnic population. We typed 44 contiguous CD247 single-nucleotide polymorphisms (SNPs) in 8922 SLE patients and 8077 controls from four ethnically distinct populations. The strongest associations were found in the Asian population (11 SNPs in intron 1, 4.99 × 10(-4) < P < 4.15 × 10(-2)), where we further identified a five-marker haplotype (rs12141731-rs2949655-rs16859085-rs12144621-rs858554; G-G-A-G-A; P(hap) = 2.12 × 10(-5)) that exceeded the most associated single SNP rs858554 (minor allele frequency in controls = 13%; P = 4.99 × 10(-4), odds ratio = 1.32) in significance. Imputation and subsequent association analysis showed evidence of association (P < 0.05) at 27 additional SNPs within intron 1. Cross-ethnic meta-analysis, assuming an additive genetic model adjusted for population proportions, showed five SNPs with significant P-values (1.40 × 10(-3) < P< 3.97 × 10(-2)), with one (rs704848) remaining significant after Bonferroni correction (P(meta) = 2.66 × 10(-2)). Our study independently confirms and extends the association of SLE with CD247, which is shared by various autoimmune disorders and supports a common T-cell-mediated mechanism. |
publishDate |
2015 |
dc.date.none.fl_str_mv |
2015-03 2015-03-01T00:00:00Z 2016-07-08T12:20:50Z |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://hdl.handle.net/10400.7/678 |
url |
http://hdl.handle.net/10400.7/678 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
Martins, M., Williams, A. H., Comeau, M., Marion, M., Ziegler, J. T., Freedman, B. I., Merrill, J. T., Glenn, S. B., Kelly, J. A., Sivils, K. M., James, J. A., Guthridge, J. M., Alarcón-Riquelme, M. E., Bae, S.-C., Kim, J.-H., Kim, D., Anaya, J.-M., Boackle, S. A., Criswell, L. A., Kimberly, R. P., Alarcón, G. S., Brown, E. E., Vilá, L. M., Petri, M. A., Ramsey-Goldman, R., Niewold, T. B., Tsao, B. P., Gilkeson, G. S., Kamen, D. L., Jacob, C. O., Stevens, A. M., Gaffney, P. M., Harley, J. B., Langefeld, C. D., Fesel, C. (2015). Genetic association of CD247 (CD3ζ) with SLE in a large-scale multiethnic study. Genes Immun, 16(2), 142–150. 10.1038/gene.2014.73 |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
application/pdf |
dc.publisher.none.fl_str_mv |
Nature Publishing Group |
publisher.none.fl_str_mv |
Nature Publishing Group |
dc.source.none.fl_str_mv |
reponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação instacron:RCAAP |
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Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação |
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RCAAP |
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RCAAP |
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Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) |
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Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) |
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Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação |
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