Automatic sleep staging: a computer assisted approach for optimal combination of features and polysomnographic channels

Detalhes bibliográficos
Autor(a) principal: Khalighi, Sirvan
Data de Publicação: 2013
Outros Autores: Sousa, Teresa, Pires, Gabriel, Nunes, Urbano
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
Texto Completo: http://hdl.handle.net/10316/27275
https://doi.org/10.1016/j.eswa.2013.06.023
Resumo: To improve applicability of automatic sleep staging an efficient subject-independent method is proposed with application in sleep–wake detection and in multiclass sleep staging (awake, non-rapid eye movement (NREM) sleep and rapid eye movement (REM) sleep). In turn, NREM is further divided into three stages denoted here by N1, N2, and N3. To assess the method, polysomnographic (PSG) records of 40 patients from our ISRUC-Sleep dataset, which was scored by an expert clinician in the central hospital of Coimbra, are used. To find the best combination of PSG signals for automatic sleep staging, six electroencephalographic (EEG), two electrooculographic (EOG), and one electromyographic (EMG) channels are analyzed. An extensive set of feature extraction techniques are applied, covering temporal, frequency and time–frequency domains. The maximum overlap wavelet transform (MODWT), a shift invariant transform, was used to extract the features in time–frequency domain. The extracted feature set is transformed and normalized to reduce the effect of extreme values of features. The most discriminative features are selected through a two-step method composed by a manual selection step based on features’ histogram analysis followed by an automatic feature selector. The selected feature set is classified using support vector machines (SVMs). The system achieved the best performance by combining 6 channels (C3, C4, O1, left EOG (LOC), right EOG (ROC) and chin EMG (X1)) for sleep–wake detection, and 9 channels (C3, C4, O1, O2, F3, F4, LOC, ROC, X1) for multiclass sleep staging.
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spelling Automatic sleep staging: a computer assisted approach for optimal combination of features and polysomnographic channelsAutomatic sleep stagingThe maximum overlap discrete wavelet transformPolysomnographic signalsFeatures selectionSleep datasetTo improve applicability of automatic sleep staging an efficient subject-independent method is proposed with application in sleep–wake detection and in multiclass sleep staging (awake, non-rapid eye movement (NREM) sleep and rapid eye movement (REM) sleep). In turn, NREM is further divided into three stages denoted here by N1, N2, and N3. To assess the method, polysomnographic (PSG) records of 40 patients from our ISRUC-Sleep dataset, which was scored by an expert clinician in the central hospital of Coimbra, are used. To find the best combination of PSG signals for automatic sleep staging, six electroencephalographic (EEG), two electrooculographic (EOG), and one electromyographic (EMG) channels are analyzed. An extensive set of feature extraction techniques are applied, covering temporal, frequency and time–frequency domains. The maximum overlap wavelet transform (MODWT), a shift invariant transform, was used to extract the features in time–frequency domain. The extracted feature set is transformed and normalized to reduce the effect of extreme values of features. The most discriminative features are selected through a two-step method composed by a manual selection step based on features’ histogram analysis followed by an automatic feature selector. The selected feature set is classified using support vector machines (SVMs). The system achieved the best performance by combining 6 channels (C3, C4, O1, left EOG (LOC), right EOG (ROC) and chin EMG (X1)) for sleep–wake detection, and 9 channels (C3, C4, O1, O2, F3, F4, LOC, ROC, X1) for multiclass sleep staging.Elsevier2013-12-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articlehttp://hdl.handle.net/10316/27275http://hdl.handle.net/10316/27275https://doi.org/10.1016/j.eswa.2013.06.023engKHALIGHI, Sirvan [et. al] - Automatic sleep staging: a computer assisted approach for optimal combination of features and polysomnographic channels. "Expert Systems with Applications". ISSN 0957-4174. Vol. 40 Nº. 17 (2013) p. 7046-70590957-4174http://www.sciencedirect.com/science/article/pii/S095741741300403XKhalighi, SirvanSousa, TeresaPires, GabrielNunes, Urbanoinfo:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2021-03-05T10:45:29Zoai:estudogeral.uc.pt:10316/27275Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-19T20:57:55.409503Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse
dc.title.none.fl_str_mv Automatic sleep staging: a computer assisted approach for optimal combination of features and polysomnographic channels
title Automatic sleep staging: a computer assisted approach for optimal combination of features and polysomnographic channels
spellingShingle Automatic sleep staging: a computer assisted approach for optimal combination of features and polysomnographic channels
Khalighi, Sirvan
Automatic sleep staging
The maximum overlap discrete wavelet transform
Polysomnographic signals
Features selection
Sleep dataset
title_short Automatic sleep staging: a computer assisted approach for optimal combination of features and polysomnographic channels
title_full Automatic sleep staging: a computer assisted approach for optimal combination of features and polysomnographic channels
title_fullStr Automatic sleep staging: a computer assisted approach for optimal combination of features and polysomnographic channels
title_full_unstemmed Automatic sleep staging: a computer assisted approach for optimal combination of features and polysomnographic channels
title_sort Automatic sleep staging: a computer assisted approach for optimal combination of features and polysomnographic channels
author Khalighi, Sirvan
author_facet Khalighi, Sirvan
Sousa, Teresa
Pires, Gabriel
Nunes, Urbano
author_role author
author2 Sousa, Teresa
Pires, Gabriel
Nunes, Urbano
author2_role author
author
author
dc.contributor.author.fl_str_mv Khalighi, Sirvan
Sousa, Teresa
Pires, Gabriel
Nunes, Urbano
dc.subject.por.fl_str_mv Automatic sleep staging
The maximum overlap discrete wavelet transform
Polysomnographic signals
Features selection
Sleep dataset
topic Automatic sleep staging
The maximum overlap discrete wavelet transform
Polysomnographic signals
Features selection
Sleep dataset
description To improve applicability of automatic sleep staging an efficient subject-independent method is proposed with application in sleep–wake detection and in multiclass sleep staging (awake, non-rapid eye movement (NREM) sleep and rapid eye movement (REM) sleep). In turn, NREM is further divided into three stages denoted here by N1, N2, and N3. To assess the method, polysomnographic (PSG) records of 40 patients from our ISRUC-Sleep dataset, which was scored by an expert clinician in the central hospital of Coimbra, are used. To find the best combination of PSG signals for automatic sleep staging, six electroencephalographic (EEG), two electrooculographic (EOG), and one electromyographic (EMG) channels are analyzed. An extensive set of feature extraction techniques are applied, covering temporal, frequency and time–frequency domains. The maximum overlap wavelet transform (MODWT), a shift invariant transform, was used to extract the features in time–frequency domain. The extracted feature set is transformed and normalized to reduce the effect of extreme values of features. The most discriminative features are selected through a two-step method composed by a manual selection step based on features’ histogram analysis followed by an automatic feature selector. The selected feature set is classified using support vector machines (SVMs). The system achieved the best performance by combining 6 channels (C3, C4, O1, left EOG (LOC), right EOG (ROC) and chin EMG (X1)) for sleep–wake detection, and 9 channels (C3, C4, O1, O2, F3, F4, LOC, ROC, X1) for multiclass sleep staging.
publishDate 2013
dc.date.none.fl_str_mv 2013-12-01
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://hdl.handle.net/10316/27275
http://hdl.handle.net/10316/27275
https://doi.org/10.1016/j.eswa.2013.06.023
url http://hdl.handle.net/10316/27275
https://doi.org/10.1016/j.eswa.2013.06.023
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv KHALIGHI, Sirvan [et. al] - Automatic sleep staging: a computer assisted approach for optimal combination of features and polysomnographic channels. "Expert Systems with Applications". ISSN 0957-4174. Vol. 40 Nº. 17 (2013) p. 7046-7059
0957-4174
http://www.sciencedirect.com/science/article/pii/S095741741300403X
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.publisher.none.fl_str_mv Elsevier
publisher.none.fl_str_mv Elsevier
dc.source.none.fl_str_mv reponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
instacron:RCAAP
instname_str Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
instacron_str RCAAP
institution RCAAP
reponame_str Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
collection Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
repository.name.fl_str_mv Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
repository.mail.fl_str_mv
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