Meiofauna metabarcoding in Lima estuary (Portugal) suggests high taxon replacement within a background of network stability

Detalhes bibliográficos
Autor(a) principal: Fais, M.
Data de Publicação: 2020
Outros Autores: Bellissario, B., Duarte, S., Vieira, P. E., Sousa, Ronaldo Gomes, Canchaya, C. A., Costa, Filipe O.
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
Texto Completo: http://hdl.handle.net/1822/72563
Resumo: Meiofauna organisms play an important role in ecological and sedimentary processes in estuarine ecosystems. Recently, the application of environmental DNA (eDNA) for investigating meiofauna in different environments, improved the accessibility to its diversity and composition in a scale, frequency and depth previously unattainable. Nevertheless, little attention has been given to the description of baseline patterns of coupled spatial and temporal dynamics of meiobenthic communities. In an earlier study conducted in Lima estuary (NW Portugal), using eDNA metabarcoding of sediment samples, high levels of meiofauna Operational Taxonomic Units (OTUs) turnover were recorded, between sampling points only a few metres apart, and among sampling stations along the estuary. In order to verify the consistency of these patterns, in the current study we re-assessed Lima estuary's meiofauna communities approximately 1 year after, applying the same methodological approach (targeting segments of the COI and 18S rRNA genes), and expanding HTS-data analyses through the use of association networks. A high degree of spatial turnover was found both within and between sampling stations and this was consistent for both markers and years. As a consequence, most of the beta-diversity was accounted by OTU replacement with only a minor contribution from OTU richness. Despite the high levels of OTU replacement, relatively stable network properties were found in meiofaunal communities, irrespective of the sampled year. Network properties appear to shift sharply from the downstream/high salinity area of the estuary to the mesohaline medium-upstream areas, suggesting high resilience and redundancy of meiofaunal communities along the estuarine gradient. The recognition of meiofauna's networks features may improve the understanding of the ecology and dynamics of these communities that apparently hold large portions of variable elements, thereby making difficult their analyses solely based on the OTU/species composition.
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spelling Meiofauna metabarcoding in Lima estuary (Portugal) suggests high taxon replacement within a background of network stabilityEstuarine ecosystemsMeiofaunaSpatial and temporal variationeDNA metabarcodingNetwork analysisCiências Naturais::Ciências BiológicasScience & TechnologyMeiofauna organisms play an important role in ecological and sedimentary processes in estuarine ecosystems. Recently, the application of environmental DNA (eDNA) for investigating meiofauna in different environments, improved the accessibility to its diversity and composition in a scale, frequency and depth previously unattainable. Nevertheless, little attention has been given to the description of baseline patterns of coupled spatial and temporal dynamics of meiobenthic communities. In an earlier study conducted in Lima estuary (NW Portugal), using eDNA metabarcoding of sediment samples, high levels of meiofauna Operational Taxonomic Units (OTUs) turnover were recorded, between sampling points only a few metres apart, and among sampling stations along the estuary. In order to verify the consistency of these patterns, in the current study we re-assessed Lima estuary's meiofauna communities approximately 1 year after, applying the same methodological approach (targeting segments of the COI and 18S rRNA genes), and expanding HTS-data analyses through the use of association networks. A high degree of spatial turnover was found both within and between sampling stations and this was consistent for both markers and years. As a consequence, most of the beta-diversity was accounted by OTU replacement with only a minor contribution from OTU richness. Despite the high levels of OTU replacement, relatively stable network properties were found in meiofaunal communities, irrespective of the sampled year. Network properties appear to shift sharply from the downstream/high salinity area of the estuary to the mesohaline medium-upstream areas, suggesting high resilience and redundancy of meiofaunal communities along the estuarine gradient. The recognition of meiofauna's networks features may improve the understanding of the ecology and dynamics of these communities that apparently hold large portions of variable elements, thereby making difficult their analyses solely based on the OTU/species composition.This study was funded by the project "The NextSea: Next generation monitoring of coastal ecosystems in a scenario of global change'' (operacao NORTE-01-0145-FEDER-000032), supported by Norte Portugal Regional Operational Programme (NORTE 2020), under the PORTUGAL 2020 Partnership Agreement, through the European Regional Development Fund (ERDF). Maria Fais and Sofia Duarte were supported, respectively by a Ph.D. (SFRH/BD/113547/2015) and a post-doc fellowship (SFRH/BPD/109842/2015) from FCT. The authors would like to thank Prof. Jesus Troncoso (University of Vigo) and Prof. Pedro Gomes (University of Minho) for their availability and hospitality for the lab processing; Dr. Bruno Sampieri and Barbara Leite (University of Minho) for the great support during the implementation of the practical stage of the research. The authors would like also to thank the anonymous reviewers for critically reading the manuscript and suggesting substantial improvements.ElsevierUniversidade do MinhoFais, M.Bellissario, B.Duarte, S.Vieira, P. E.Sousa, Ronaldo GomesCanchaya, C. A.Costa, Filipe O.20202020-01-01T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfhttp://hdl.handle.net/1822/72563eng2352-485510.1016/j.rsma.2020.101341https://www.sciencedirect.com/science/article/pii/S2352485520304692info:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2023-07-21T11:58:47Zoai:repositorium.sdum.uminho.pt:1822/72563Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-19T18:48:34.367595Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse
dc.title.none.fl_str_mv Meiofauna metabarcoding in Lima estuary (Portugal) suggests high taxon replacement within a background of network stability
title Meiofauna metabarcoding in Lima estuary (Portugal) suggests high taxon replacement within a background of network stability
spellingShingle Meiofauna metabarcoding in Lima estuary (Portugal) suggests high taxon replacement within a background of network stability
Fais, M.
Estuarine ecosystems
Meiofauna
Spatial and temporal variation
eDNA metabarcoding
Network analysis
Ciências Naturais::Ciências Biológicas
Science & Technology
title_short Meiofauna metabarcoding in Lima estuary (Portugal) suggests high taxon replacement within a background of network stability
title_full Meiofauna metabarcoding in Lima estuary (Portugal) suggests high taxon replacement within a background of network stability
title_fullStr Meiofauna metabarcoding in Lima estuary (Portugal) suggests high taxon replacement within a background of network stability
title_full_unstemmed Meiofauna metabarcoding in Lima estuary (Portugal) suggests high taxon replacement within a background of network stability
title_sort Meiofauna metabarcoding in Lima estuary (Portugal) suggests high taxon replacement within a background of network stability
author Fais, M.
author_facet Fais, M.
Bellissario, B.
Duarte, S.
Vieira, P. E.
Sousa, Ronaldo Gomes
Canchaya, C. A.
Costa, Filipe O.
author_role author
author2 Bellissario, B.
Duarte, S.
Vieira, P. E.
Sousa, Ronaldo Gomes
Canchaya, C. A.
Costa, Filipe O.
author2_role author
author
author
author
author
author
dc.contributor.none.fl_str_mv Universidade do Minho
dc.contributor.author.fl_str_mv Fais, M.
Bellissario, B.
Duarte, S.
Vieira, P. E.
Sousa, Ronaldo Gomes
Canchaya, C. A.
Costa, Filipe O.
dc.subject.por.fl_str_mv Estuarine ecosystems
Meiofauna
Spatial and temporal variation
eDNA metabarcoding
Network analysis
Ciências Naturais::Ciências Biológicas
Science & Technology
topic Estuarine ecosystems
Meiofauna
Spatial and temporal variation
eDNA metabarcoding
Network analysis
Ciências Naturais::Ciências Biológicas
Science & Technology
description Meiofauna organisms play an important role in ecological and sedimentary processes in estuarine ecosystems. Recently, the application of environmental DNA (eDNA) for investigating meiofauna in different environments, improved the accessibility to its diversity and composition in a scale, frequency and depth previously unattainable. Nevertheless, little attention has been given to the description of baseline patterns of coupled spatial and temporal dynamics of meiobenthic communities. In an earlier study conducted in Lima estuary (NW Portugal), using eDNA metabarcoding of sediment samples, high levels of meiofauna Operational Taxonomic Units (OTUs) turnover were recorded, between sampling points only a few metres apart, and among sampling stations along the estuary. In order to verify the consistency of these patterns, in the current study we re-assessed Lima estuary's meiofauna communities approximately 1 year after, applying the same methodological approach (targeting segments of the COI and 18S rRNA genes), and expanding HTS-data analyses through the use of association networks. A high degree of spatial turnover was found both within and between sampling stations and this was consistent for both markers and years. As a consequence, most of the beta-diversity was accounted by OTU replacement with only a minor contribution from OTU richness. Despite the high levels of OTU replacement, relatively stable network properties were found in meiofaunal communities, irrespective of the sampled year. Network properties appear to shift sharply from the downstream/high salinity area of the estuary to the mesohaline medium-upstream areas, suggesting high resilience and redundancy of meiofaunal communities along the estuarine gradient. The recognition of meiofauna's networks features may improve the understanding of the ecology and dynamics of these communities that apparently hold large portions of variable elements, thereby making difficult their analyses solely based on the OTU/species composition.
publishDate 2020
dc.date.none.fl_str_mv 2020
2020-01-01T00:00:00Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://hdl.handle.net/1822/72563
url http://hdl.handle.net/1822/72563
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv 2352-4855
10.1016/j.rsma.2020.101341
https://www.sciencedirect.com/science/article/pii/S2352485520304692
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dc.publisher.none.fl_str_mv Elsevier
publisher.none.fl_str_mv Elsevier
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