Collective and harmonized high throughput barcoding of insular arthropod biodiversity: Toward a Genomic Observatories Network for islands
Autor(a) principal: | |
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Data de Publicação: | 2023 |
Outros Autores: | , , , , , , , , , , , , , , , , , , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) |
Texto Completo: | http://hdl.handle.net/10400.3/6899 |
Resumo: | ABSTRACT: Current understanding of ecological and evolutionary processes underlying island biodiversity is heavily shaped by empirical data from plants and birds, although arthropods comprise the overwhelming majority of known animal species, and as such can provide key insights into processes governing biodiversity. Novel high throughput sequencing (HTS) approaches are now emerging as powerful tools to overcome limitations in the availability of arthropod biodiversity data, and hence provide insights into these processes. Here, we explored how these tools might be most effectively exploited for comprehensive and comparable inventory and monitoring of insular arthropod biodiversity. We first reviewed the strengths, limitations and potential synergies among existing approaches of high throughput barcode sequencing. We considered how this could be complemented with deep learning approaches applied to image analysis to study arthropod biodiversity. We then explored how these approaches could be implemented within the framework of an island Genomic Observatories Network (iGON) for the advancement of fundamental and applied understanding of island biodiversity. To this end, we identified seven island biology themes at the interface of ecology, evolution and conservation biology, within which collective and harmonized efforts in HTS arthropod inventory could yield significant advances in island biodiversity research. |
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Collective and harmonized high throughput barcoding of insular arthropod biodiversity: Toward a Genomic Observatories Network for islandsArthropodsBiodiversity ConservationIsland EvolutionIsland BiodiversityABSTRACT: Current understanding of ecological and evolutionary processes underlying island biodiversity is heavily shaped by empirical data from plants and birds, although arthropods comprise the overwhelming majority of known animal species, and as such can provide key insights into processes governing biodiversity. Novel high throughput sequencing (HTS) approaches are now emerging as powerful tools to overcome limitations in the availability of arthropod biodiversity data, and hence provide insights into these processes. Here, we explored how these tools might be most effectively exploited for comprehensive and comparable inventory and monitoring of insular arthropod biodiversity. We first reviewed the strengths, limitations and potential synergies among existing approaches of high throughput barcode sequencing. We considered how this could be complemented with deep learning approaches applied to image analysis to study arthropod biodiversity. We then explored how these approaches could be implemented within the framework of an island Genomic Observatories Network (iGON) for the advancement of fundamental and applied understanding of island biodiversity. To this end, we identified seven island biology themes at the interface of ecology, evolution and conservation biology, within which collective and harmonized efforts in HTS arthropod inventory could yield significant advances in island biodiversity research.WileyRepositório da Universidade dos AçoresEmerson, Brent C.Borges, Paulo A. V.Cardoso, PedroConvey, PeterdeWaard, Jeremy R.Economo, Evan P.Gillespie, Rosemary G.Kennedy, SusanKrehenwinkel, HenrikMeier, RudolfRoderick, George K.Strasberg, DominiqueThébaud, ChristopheTraveset, AnnaCreedy, Thomas J.Meramveliotakis, EmmanouilNoguerales, VíctorOvercast, IsaacMorlon, HélènePapadopoulou, AnnaVogler, Alfried P.Arribas, PaulaAndújar, Carmelo2024-01-24T14:36:03Z20232023-01-01T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfhttp://hdl.handle.net/10400.3/6899engEmerson, B., Borges, P. A. V., Cardoso, P., Convey, P., deWarrd, J. R., Economo, E. P, Gillespie, R. G., Kennedy, S., Krehenwinkel, H., Meier, R., Roderick, G. K., Strasberg, D., Thébaud, C., Traveset, A, Creedy, T. J., Meramveliotakis, E., Noguerales, V., Overcast, I., Morlon, H., Papadopoulou, A., Vogler, A. P., Arribas, P., & Andújar, C. (2023). Collective and harmonised high throughput barcoding of insular arthropod biodiversity: toward a Genomic Observatories Network for islands. "Molecular Ecology", 32, 6161-6176. DOI:10.1111/mec.166830692-108310.1111/mec.166831365-294Xinfo:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2024-01-27T02:00:47Zoai:repositorio.uac.pt:10400.3/6899Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-20T01:58:02.276110Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse |
dc.title.none.fl_str_mv |
Collective and harmonized high throughput barcoding of insular arthropod biodiversity: Toward a Genomic Observatories Network for islands |
title |
Collective and harmonized high throughput barcoding of insular arthropod biodiversity: Toward a Genomic Observatories Network for islands |
spellingShingle |
Collective and harmonized high throughput barcoding of insular arthropod biodiversity: Toward a Genomic Observatories Network for islands Emerson, Brent C. Arthropods Biodiversity Conservation Island Evolution Island Biodiversity |
title_short |
Collective and harmonized high throughput barcoding of insular arthropod biodiversity: Toward a Genomic Observatories Network for islands |
title_full |
Collective and harmonized high throughput barcoding of insular arthropod biodiversity: Toward a Genomic Observatories Network for islands |
title_fullStr |
Collective and harmonized high throughput barcoding of insular arthropod biodiversity: Toward a Genomic Observatories Network for islands |
title_full_unstemmed |
Collective and harmonized high throughput barcoding of insular arthropod biodiversity: Toward a Genomic Observatories Network for islands |
title_sort |
Collective and harmonized high throughput barcoding of insular arthropod biodiversity: Toward a Genomic Observatories Network for islands |
author |
Emerson, Brent C. |
author_facet |
Emerson, Brent C. Borges, Paulo A. V. Cardoso, Pedro Convey, Peter deWaard, Jeremy R. Economo, Evan P. Gillespie, Rosemary G. Kennedy, Susan Krehenwinkel, Henrik Meier, Rudolf Roderick, George K. Strasberg, Dominique Thébaud, Christophe Traveset, Anna Creedy, Thomas J. Meramveliotakis, Emmanouil Noguerales, Víctor Overcast, Isaac Morlon, Hélène Papadopoulou, Anna Vogler, Alfried P. Arribas, Paula Andújar, Carmelo |
author_role |
author |
author2 |
Borges, Paulo A. V. Cardoso, Pedro Convey, Peter deWaard, Jeremy R. Economo, Evan P. Gillespie, Rosemary G. Kennedy, Susan Krehenwinkel, Henrik Meier, Rudolf Roderick, George K. Strasberg, Dominique Thébaud, Christophe Traveset, Anna Creedy, Thomas J. Meramveliotakis, Emmanouil Noguerales, Víctor Overcast, Isaac Morlon, Hélène Papadopoulou, Anna Vogler, Alfried P. Arribas, Paula Andújar, Carmelo |
author2_role |
author author author author author author author author author author author author author author author author author author author author author author |
dc.contributor.none.fl_str_mv |
Repositório da Universidade dos Açores |
dc.contributor.author.fl_str_mv |
Emerson, Brent C. Borges, Paulo A. V. Cardoso, Pedro Convey, Peter deWaard, Jeremy R. Economo, Evan P. Gillespie, Rosemary G. Kennedy, Susan Krehenwinkel, Henrik Meier, Rudolf Roderick, George K. Strasberg, Dominique Thébaud, Christophe Traveset, Anna Creedy, Thomas J. Meramveliotakis, Emmanouil Noguerales, Víctor Overcast, Isaac Morlon, Hélène Papadopoulou, Anna Vogler, Alfried P. Arribas, Paula Andújar, Carmelo |
dc.subject.por.fl_str_mv |
Arthropods Biodiversity Conservation Island Evolution Island Biodiversity |
topic |
Arthropods Biodiversity Conservation Island Evolution Island Biodiversity |
description |
ABSTRACT: Current understanding of ecological and evolutionary processes underlying island biodiversity is heavily shaped by empirical data from plants and birds, although arthropods comprise the overwhelming majority of known animal species, and as such can provide key insights into processes governing biodiversity. Novel high throughput sequencing (HTS) approaches are now emerging as powerful tools to overcome limitations in the availability of arthropod biodiversity data, and hence provide insights into these processes. Here, we explored how these tools might be most effectively exploited for comprehensive and comparable inventory and monitoring of insular arthropod biodiversity. We first reviewed the strengths, limitations and potential synergies among existing approaches of high throughput barcode sequencing. We considered how this could be complemented with deep learning approaches applied to image analysis to study arthropod biodiversity. We then explored how these approaches could be implemented within the framework of an island Genomic Observatories Network (iGON) for the advancement of fundamental and applied understanding of island biodiversity. To this end, we identified seven island biology themes at the interface of ecology, evolution and conservation biology, within which collective and harmonized efforts in HTS arthropod inventory could yield significant advances in island biodiversity research. |
publishDate |
2023 |
dc.date.none.fl_str_mv |
2023 2023-01-01T00:00:00Z 2024-01-24T14:36:03Z |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://hdl.handle.net/10400.3/6899 |
url |
http://hdl.handle.net/10400.3/6899 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
Emerson, B., Borges, P. A. V., Cardoso, P., Convey, P., deWarrd, J. R., Economo, E. P, Gillespie, R. G., Kennedy, S., Krehenwinkel, H., Meier, R., Roderick, G. K., Strasberg, D., Thébaud, C., Traveset, A, Creedy, T. J., Meramveliotakis, E., Noguerales, V., Overcast, I., Morlon, H., Papadopoulou, A., Vogler, A. P., Arribas, P., & Andújar, C. (2023). Collective and harmonised high throughput barcoding of insular arthropod biodiversity: toward a Genomic Observatories Network for islands. "Molecular Ecology", 32, 6161-6176. DOI:10.1111/mec.16683 0692-1083 10.1111/mec.16683 1365-294X |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
application/pdf |
dc.publisher.none.fl_str_mv |
Wiley |
publisher.none.fl_str_mv |
Wiley |
dc.source.none.fl_str_mv |
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RCAAP |
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RCAAP |
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Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) |
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Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) |
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Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação |
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