Compositional analysis of bacterial communities in seawater, sediment, and sponges in the Misool coral reef system, Indonesia

Detalhes bibliográficos
Autor(a) principal: Cleary, Daniel Francis Richard
Data de Publicação: 2018
Outros Autores: Polónia, Ana Rita Moura, Becking, Leontine E., de Voogd, Nicole Joy, Purwanto, Gomes, Helder, Gomes, Newton Carlos Marcial
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
Texto Completo: http://hdl.handle.net/10773/28169
Resumo: Sponge species have been deemed high microbial abundance (HMA) or low microbial abundance (LMA) based on the composition and abundance of their microbial symbionts. In the present study, we evaluated the richness and composition of bacterial communities associated with one HMA sponge (Xestospongia testudinaria; Demospongiae: Haplosclerida: Petrosiidae), one LMA sponge (Stylissa carteri; Demospongiae: Scopalinida - Scopalinidae), and one sponge with a hitherto unknown microbial community (Aaptos suberitoides; Demospongiae: Suberitida: Suberitidae) inhabiting the Misool coral reef system in the West Papua province of Indonesia. The bacterial communities of these sponge species were also compared with seawater and sediment bacterial communities from the same coastal coral reef habitat. Using a 16S rRNA gene barcoded pyrosequencing approach, we showed that the most abundant phylum overall was Proteobacteria. The biotope (sponge species, sediment or seawater) explained almost 84% of the variation in bacterial composition with highly significant differences in composition among biotopes and a clear separation between bacterial communities from seawater and S. carteri; X. testudinaria and A. suberitoides and sediment. The Chloroflexi classes SAR202 and Anaerolineae were most abundant in A. suberitoides and X. testudinaria and both of these species shared several OTUs that were largely absent in the remaining biotopes. This suggests that A. suberitoides is a HMA sponge. Although similar, the bacterial communities of S. carteri and seawater were compositionally distinct. These results confirm compositional differences between sponge and non-sponge biotopes and between HMA and LMA sponges.
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spelling Compositional analysis of bacterial communities in seawater, sediment, and sponges in the Misool coral reef system, IndonesiaAaptos suberitoidesMicrobial abundanceStylissa Carteri16S rRNA geneXestospongia testudinariaSponge species have been deemed high microbial abundance (HMA) or low microbial abundance (LMA) based on the composition and abundance of their microbial symbionts. In the present study, we evaluated the richness and composition of bacterial communities associated with one HMA sponge (Xestospongia testudinaria; Demospongiae: Haplosclerida: Petrosiidae), one LMA sponge (Stylissa carteri; Demospongiae: Scopalinida - Scopalinidae), and one sponge with a hitherto unknown microbial community (Aaptos suberitoides; Demospongiae: Suberitida: Suberitidae) inhabiting the Misool coral reef system in the West Papua province of Indonesia. The bacterial communities of these sponge species were also compared with seawater and sediment bacterial communities from the same coastal coral reef habitat. Using a 16S rRNA gene barcoded pyrosequencing approach, we showed that the most abundant phylum overall was Proteobacteria. The biotope (sponge species, sediment or seawater) explained almost 84% of the variation in bacterial composition with highly significant differences in composition among biotopes and a clear separation between bacterial communities from seawater and S. carteri; X. testudinaria and A. suberitoides and sediment. The Chloroflexi classes SAR202 and Anaerolineae were most abundant in A. suberitoides and X. testudinaria and both of these species shared several OTUs that were largely absent in the remaining biotopes. This suggests that A. suberitoides is a HMA sponge. Although similar, the bacterial communities of S. carteri and seawater were compositionally distinct. These results confirm compositional differences between sponge and non-sponge biotopes and between HMA and LMA sponges.Springer2020-04-02T16:18:46Z2018-01-01T00:00:00Z2018info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfhttp://hdl.handle.net/10773/28169eng1867-161610.1007/s12526-017-0697-0Cleary, Daniel Francis RichardPolónia, Ana Rita MouraBecking, Leontine E.de Voogd, Nicole JoyPurwantoGomes, HelderGomes, Newton Carlos Marcialinfo:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2024-02-22T11:54:31Zoai:ria.ua.pt:10773/28169Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-20T03:00:47.190675Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse
dc.title.none.fl_str_mv Compositional analysis of bacterial communities in seawater, sediment, and sponges in the Misool coral reef system, Indonesia
title Compositional analysis of bacterial communities in seawater, sediment, and sponges in the Misool coral reef system, Indonesia
spellingShingle Compositional analysis of bacterial communities in seawater, sediment, and sponges in the Misool coral reef system, Indonesia
Cleary, Daniel Francis Richard
Aaptos suberitoides
Microbial abundance
Stylissa Carteri
16S rRNA gene
Xestospongia testudinaria
title_short Compositional analysis of bacterial communities in seawater, sediment, and sponges in the Misool coral reef system, Indonesia
title_full Compositional analysis of bacterial communities in seawater, sediment, and sponges in the Misool coral reef system, Indonesia
title_fullStr Compositional analysis of bacterial communities in seawater, sediment, and sponges in the Misool coral reef system, Indonesia
title_full_unstemmed Compositional analysis of bacterial communities in seawater, sediment, and sponges in the Misool coral reef system, Indonesia
title_sort Compositional analysis of bacterial communities in seawater, sediment, and sponges in the Misool coral reef system, Indonesia
author Cleary, Daniel Francis Richard
author_facet Cleary, Daniel Francis Richard
Polónia, Ana Rita Moura
Becking, Leontine E.
de Voogd, Nicole Joy
Purwanto
Gomes, Helder
Gomes, Newton Carlos Marcial
author_role author
author2 Polónia, Ana Rita Moura
Becking, Leontine E.
de Voogd, Nicole Joy
Purwanto
Gomes, Helder
Gomes, Newton Carlos Marcial
author2_role author
author
author
author
author
author
dc.contributor.author.fl_str_mv Cleary, Daniel Francis Richard
Polónia, Ana Rita Moura
Becking, Leontine E.
de Voogd, Nicole Joy
Purwanto
Gomes, Helder
Gomes, Newton Carlos Marcial
dc.subject.por.fl_str_mv Aaptos suberitoides
Microbial abundance
Stylissa Carteri
16S rRNA gene
Xestospongia testudinaria
topic Aaptos suberitoides
Microbial abundance
Stylissa Carteri
16S rRNA gene
Xestospongia testudinaria
description Sponge species have been deemed high microbial abundance (HMA) or low microbial abundance (LMA) based on the composition and abundance of their microbial symbionts. In the present study, we evaluated the richness and composition of bacterial communities associated with one HMA sponge (Xestospongia testudinaria; Demospongiae: Haplosclerida: Petrosiidae), one LMA sponge (Stylissa carteri; Demospongiae: Scopalinida - Scopalinidae), and one sponge with a hitherto unknown microbial community (Aaptos suberitoides; Demospongiae: Suberitida: Suberitidae) inhabiting the Misool coral reef system in the West Papua province of Indonesia. The bacterial communities of these sponge species were also compared with seawater and sediment bacterial communities from the same coastal coral reef habitat. Using a 16S rRNA gene barcoded pyrosequencing approach, we showed that the most abundant phylum overall was Proteobacteria. The biotope (sponge species, sediment or seawater) explained almost 84% of the variation in bacterial composition with highly significant differences in composition among biotopes and a clear separation between bacterial communities from seawater and S. carteri; X. testudinaria and A. suberitoides and sediment. The Chloroflexi classes SAR202 and Anaerolineae were most abundant in A. suberitoides and X. testudinaria and both of these species shared several OTUs that were largely absent in the remaining biotopes. This suggests that A. suberitoides is a HMA sponge. Although similar, the bacterial communities of S. carteri and seawater were compositionally distinct. These results confirm compositional differences between sponge and non-sponge biotopes and between HMA and LMA sponges.
publishDate 2018
dc.date.none.fl_str_mv 2018-01-01T00:00:00Z
2018
2020-04-02T16:18:46Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
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dc.identifier.uri.fl_str_mv http://hdl.handle.net/10773/28169
url http://hdl.handle.net/10773/28169
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv 1867-1616
10.1007/s12526-017-0697-0
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eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Springer
publisher.none.fl_str_mv Springer
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instname_str Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
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collection Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
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