Genes found in partial sequencing of Phytophthora cinnamomi genome

Detalhes bibliográficos
Autor(a) principal: Santos, Luís
Data de Publicação: 2019
Outros Autores: Martins, Ivone M., Maia, Vera, Dominguez, Ángel, Choupina, Altino
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
Texto Completo: https://doi.org/10.19084/RCA16083
Resumo: Members of the oomycete cause extensive losses in agriculture and widespread degradation in natural plant communities, being responsible for the death of thousands of trees every year. Two of the representative species are Phytophthora infestans, which causes late blight of potato, and Phytophthora cinnamomi, which causes chestnut ink disease, responsible for losses on sweet chestnut production in Europe. Genome sequencing efforts have been focused on the study of three species: P. infestans, P. sojae and P. ramorum. Phytophthora infestanshas been developed as the model specie for the genus, possessing excellent genetic and genomics resources including genetic maps, BAC libraries, and EST sequences. Our research team is trying to sequence the genome of P. cinnamomi in order to gain a better understanding of this oomycete, to study changes in plant-pathogen relationships including those resulting from climate change and trying to decrease the pathogen’s impact on crops and plants in natural ecosystems worldwide. We present here a preliminary report of partially sequenced genomic DNA from P. cinnamomi encoding putative protein-coding sequences and tRNAs. Database analysis reveals the presence of genes conserved in oomycetes.
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spelling Genes found in partial sequencing of Phytophthora cinnamomi genomeGenes descobertos na sequenciação parcial do genoma de Phytophthora cinnamomiGeralMembers of the oomycete cause extensive losses in agriculture and widespread degradation in natural plant communities, being responsible for the death of thousands of trees every year. Two of the representative species are Phytophthora infestans, which causes late blight of potato, and Phytophthora cinnamomi, which causes chestnut ink disease, responsible for losses on sweet chestnut production in Europe. Genome sequencing efforts have been focused on the study of three species: P. infestans, P. sojae and P. ramorum. Phytophthora infestanshas been developed as the model specie for the genus, possessing excellent genetic and genomics resources including genetic maps, BAC libraries, and EST sequences. Our research team is trying to sequence the genome of P. cinnamomi in order to gain a better understanding of this oomycete, to study changes in plant-pathogen relationships including those resulting from climate change and trying to decrease the pathogen’s impact on crops and plants in natural ecosystems worldwide. We present here a preliminary report of partially sequenced genomic DNA from P. cinnamomi encoding putative protein-coding sequences and tRNAs. Database analysis reveals the presence of genes conserved in oomycetes.Os oomicetas causam enormes perdas na agricultura e degradação generalizada em áreas de crescimento natural, sendo responsáveis pela morte de milhares de árvores por ano. Duas das espécies representativas de oomicetas são Phytophthora infestans, que provoca o míldio da batateira, e Phytophthora cinnamomi, que causa a doença da tinta do castanheiro, responsável por perdas de produção de castanha na Europa. Os esforços de sequenciação de genomas de oomicetas têm estado focados no estudo de três espécies: P. infestans, P. sojae e P. ramorum. Phytophthora infestans foi considerada como espécie modelo para o género, pois possui excelentes recursos genéticos e de genómica, incluindo mapas genéticos, bibliotecas BAC, e sequências de EST. Esta equipa de investigadores procura sequenciar o genoma de P. cinnamomi, a fim de obter uma melhor compreensão deste oomiceta, para estudar mudanças nas relações planta-patogénio, incluindo as resultantes das alterações climáticas, e tentando diminuir o impacto do patogénio nas culturas e plantas em ecossistemas naturais em todo o mundo. É apresentada uma abordagem preliminar do DNA genómico parcialmente sequenciado a partir de P. cinnamomi, o qual codifica possíveis sequências de proteínas e tRNAs. As análises em bases de dados revelam a presença de genes conservados em oomicetas.Sociedade de Ciências Agrárias de Portugal2019-01-07T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articlehttps://doi.org/10.19084/RCA16083eng2183-041X0871-018XSantos, LuísMartins, Ivone M.Maia, VeraDominguez, ÁngelChoupina, Altinoinfo:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2022-09-06T09:24:26ZPortal AgregadorONG
dc.title.none.fl_str_mv Genes found in partial sequencing of Phytophthora cinnamomi genome
Genes descobertos na sequenciação parcial do genoma de Phytophthora cinnamomi
title Genes found in partial sequencing of Phytophthora cinnamomi genome
spellingShingle Genes found in partial sequencing of Phytophthora cinnamomi genome
Santos, Luís
Geral
title_short Genes found in partial sequencing of Phytophthora cinnamomi genome
title_full Genes found in partial sequencing of Phytophthora cinnamomi genome
title_fullStr Genes found in partial sequencing of Phytophthora cinnamomi genome
title_full_unstemmed Genes found in partial sequencing of Phytophthora cinnamomi genome
title_sort Genes found in partial sequencing of Phytophthora cinnamomi genome
author Santos, Luís
author_facet Santos, Luís
Martins, Ivone M.
Maia, Vera
Dominguez, Ángel
Choupina, Altino
author_role author
author2 Martins, Ivone M.
Maia, Vera
Dominguez, Ángel
Choupina, Altino
author2_role author
author
author
author
dc.contributor.author.fl_str_mv Santos, Luís
Martins, Ivone M.
Maia, Vera
Dominguez, Ángel
Choupina, Altino
dc.subject.por.fl_str_mv Geral
topic Geral
description Members of the oomycete cause extensive losses in agriculture and widespread degradation in natural plant communities, being responsible for the death of thousands of trees every year. Two of the representative species are Phytophthora infestans, which causes late blight of potato, and Phytophthora cinnamomi, which causes chestnut ink disease, responsible for losses on sweet chestnut production in Europe. Genome sequencing efforts have been focused on the study of three species: P. infestans, P. sojae and P. ramorum. Phytophthora infestanshas been developed as the model specie for the genus, possessing excellent genetic and genomics resources including genetic maps, BAC libraries, and EST sequences. Our research team is trying to sequence the genome of P. cinnamomi in order to gain a better understanding of this oomycete, to study changes in plant-pathogen relationships including those resulting from climate change and trying to decrease the pathogen’s impact on crops and plants in natural ecosystems worldwide. We present here a preliminary report of partially sequenced genomic DNA from P. cinnamomi encoding putative protein-coding sequences and tRNAs. Database analysis reveals the presence of genes conserved in oomycetes.
publishDate 2019
dc.date.none.fl_str_mv 2019-01-07T00:00:00Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv https://doi.org/10.19084/RCA16083
url https://doi.org/10.19084/RCA16083
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv 2183-041X
0871-018X
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.publisher.none.fl_str_mv Sociedade de Ciências Agrárias de Portugal
publisher.none.fl_str_mv Sociedade de Ciências Agrárias de Portugal
dc.source.none.fl_str_mv reponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
instacron:RCAAP
instname_str Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
instacron_str RCAAP
institution RCAAP
reponame_str Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
collection Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
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repository.mail.fl_str_mv
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