Comparative transcriptomics of Arabidopsis sperm cells

Detalhes bibliográficos
Autor(a) principal: Borges, Filipe Filipe
Data de Publicação: 2008
Outros Autores: Gomes, Gabriela, Gardner, Rui, Moreno, Nuno, McCormick, Sheila, Feijo, Jose A. Jose A., Becker, Joeg D Joeg D
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
Texto Completo: http://hdl.handle.net/10400.7/104
Resumo: n flowering plants, the two sperm cells are embedded within the cytoplasm of the growing pollen tube and as such are passively transported to the embryo sac, wherein double fertilization occurs upon their release. Understanding the mechanisms and conditions by which male gametes mature and take part in fertilization are crucial goals in the study of plant reproduction. Studies of gene expression in male gametes of maize (Zea mays) and Plumbago and in lily (Lilium longiflorum) generative cells already showed that the previously held view of transcriptionally inert male gametes was not true, but genome-wide studies were lacking. Analyses in the model plant Arabidopsis (Arabidopsis thaliana) were hindered, because no method to isolate sperm cells was available. Here, we used fluorescence-activated cell sorting to isolate sperm cells from Arabidopsis, allowing GeneChip analysis of their transcriptome at a genome-wide level. Comparative analysis of the sperm cell transcriptome with those of representative sporophytic tissues and of pollen showed that sperm has a distinct and diverse transcriptional profile. Functional classifications of genes with enriched expression in sperm cells showed that DNA repair, ubiquitin-mediated proteolysis, and cell cycle progression are overrepresented Gene Ontology categories. Moreover, analysis of the small RNA and DNA methylation pathways suggests that distinct mechanisms might be involved in regulating the epigenetic state of the paternal genome. We identified numerous candidate genes whose involvement in sperm cell development and fertilization can now be directly tested in Arabidopsis. These results provide a roadmap to decipher the role of sperm-expressed proteins
id RCAP_832661697ebe4d9d910846a653d897f0
oai_identifier_str oai:arca.igc.gulbenkian.pt:10400.7/104
network_acronym_str RCAP
network_name_str Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
repository_id_str 7160
spelling Comparative transcriptomics of Arabidopsis sperm cellsLONGIFLORUM GENERATIVE CELLSPOLLEN-TUBE GUIDANCEF-BOX PROTEINSn flowering plants, the two sperm cells are embedded within the cytoplasm of the growing pollen tube and as such are passively transported to the embryo sac, wherein double fertilization occurs upon their release. Understanding the mechanisms and conditions by which male gametes mature and take part in fertilization are crucial goals in the study of plant reproduction. Studies of gene expression in male gametes of maize (Zea mays) and Plumbago and in lily (Lilium longiflorum) generative cells already showed that the previously held view of transcriptionally inert male gametes was not true, but genome-wide studies were lacking. Analyses in the model plant Arabidopsis (Arabidopsis thaliana) were hindered, because no method to isolate sperm cells was available. Here, we used fluorescence-activated cell sorting to isolate sperm cells from Arabidopsis, allowing GeneChip analysis of their transcriptome at a genome-wide level. Comparative analysis of the sperm cell transcriptome with those of representative sporophytic tissues and of pollen showed that sperm has a distinct and diverse transcriptional profile. Functional classifications of genes with enriched expression in sperm cells showed that DNA repair, ubiquitin-mediated proteolysis, and cell cycle progression are overrepresented Gene Ontology categories. Moreover, analysis of the small RNA and DNA methylation pathways suggests that distinct mechanisms might be involved in regulating the epigenetic state of the paternal genome. We identified numerous candidate genes whose involvement in sperm cell development and fertilization can now be directly tested in Arabidopsis. These results provide a roadmap to decipher the role of sperm-expressed proteinsAmerican Society of Plant PhysiologistsARCABorges, Filipe FilipeGomes, GabrielaGardner, RuiMoreno, NunoMcCormick, SheilaFeijo, Jose A. Jose A.Becker, Joeg D Joeg D2010-04-21T15:52:41Z2008-102008-10-01T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfhttp://hdl.handle.net/10400.7/104engBorges, F., Gomes, M.G.M., Gardner, R., Moreno, N., McCormick, S., Feijó, J.A., Becker, J.D. (2008). "Comparative Transcriptomics of Arabidopsis Sperm Cells." Plant Physiology 148: 1-14.0032-0889info:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2022-11-29T14:34:38Zoai:arca.igc.gulbenkian.pt:10400.7/104Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-19T16:11:34.797081Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse
dc.title.none.fl_str_mv Comparative transcriptomics of Arabidopsis sperm cells
title Comparative transcriptomics of Arabidopsis sperm cells
spellingShingle Comparative transcriptomics of Arabidopsis sperm cells
Borges, Filipe Filipe
LONGIFLORUM GENERATIVE CELLS
POLLEN-TUBE GUIDANCE
F-BOX PROTEINS
title_short Comparative transcriptomics of Arabidopsis sperm cells
title_full Comparative transcriptomics of Arabidopsis sperm cells
title_fullStr Comparative transcriptomics of Arabidopsis sperm cells
title_full_unstemmed Comparative transcriptomics of Arabidopsis sperm cells
title_sort Comparative transcriptomics of Arabidopsis sperm cells
author Borges, Filipe Filipe
author_facet Borges, Filipe Filipe
Gomes, Gabriela
Gardner, Rui
Moreno, Nuno
McCormick, Sheila
Feijo, Jose A. Jose A.
Becker, Joeg D Joeg D
author_role author
author2 Gomes, Gabriela
Gardner, Rui
Moreno, Nuno
McCormick, Sheila
Feijo, Jose A. Jose A.
Becker, Joeg D Joeg D
author2_role author
author
author
author
author
author
dc.contributor.none.fl_str_mv ARCA
dc.contributor.author.fl_str_mv Borges, Filipe Filipe
Gomes, Gabriela
Gardner, Rui
Moreno, Nuno
McCormick, Sheila
Feijo, Jose A. Jose A.
Becker, Joeg D Joeg D
dc.subject.por.fl_str_mv LONGIFLORUM GENERATIVE CELLS
POLLEN-TUBE GUIDANCE
F-BOX PROTEINS
topic LONGIFLORUM GENERATIVE CELLS
POLLEN-TUBE GUIDANCE
F-BOX PROTEINS
description n flowering plants, the two sperm cells are embedded within the cytoplasm of the growing pollen tube and as such are passively transported to the embryo sac, wherein double fertilization occurs upon their release. Understanding the mechanisms and conditions by which male gametes mature and take part in fertilization are crucial goals in the study of plant reproduction. Studies of gene expression in male gametes of maize (Zea mays) and Plumbago and in lily (Lilium longiflorum) generative cells already showed that the previously held view of transcriptionally inert male gametes was not true, but genome-wide studies were lacking. Analyses in the model plant Arabidopsis (Arabidopsis thaliana) were hindered, because no method to isolate sperm cells was available. Here, we used fluorescence-activated cell sorting to isolate sperm cells from Arabidopsis, allowing GeneChip analysis of their transcriptome at a genome-wide level. Comparative analysis of the sperm cell transcriptome with those of representative sporophytic tissues and of pollen showed that sperm has a distinct and diverse transcriptional profile. Functional classifications of genes with enriched expression in sperm cells showed that DNA repair, ubiquitin-mediated proteolysis, and cell cycle progression are overrepresented Gene Ontology categories. Moreover, analysis of the small RNA and DNA methylation pathways suggests that distinct mechanisms might be involved in regulating the epigenetic state of the paternal genome. We identified numerous candidate genes whose involvement in sperm cell development and fertilization can now be directly tested in Arabidopsis. These results provide a roadmap to decipher the role of sperm-expressed proteins
publishDate 2008
dc.date.none.fl_str_mv 2008-10
2008-10-01T00:00:00Z
2010-04-21T15:52:41Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://hdl.handle.net/10400.7/104
url http://hdl.handle.net/10400.7/104
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Borges, F., Gomes, M.G.M., Gardner, R., Moreno, N., McCormick, S., Feijó, J.A., Becker, J.D. (2008). "Comparative Transcriptomics of Arabidopsis Sperm Cells." Plant Physiology 148: 1-14.
0032-0889
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv American Society of Plant Physiologists
publisher.none.fl_str_mv American Society of Plant Physiologists
dc.source.none.fl_str_mv reponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
instacron:RCAAP
instname_str Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
instacron_str RCAAP
institution RCAAP
reponame_str Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
collection Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
repository.name.fl_str_mv Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
repository.mail.fl_str_mv
_version_ 1799130571434098688