Liquid biopsy for disease monitoring in non-small cell lung cancer: The link between biology and the clinic

Detalhes bibliográficos
Autor(a) principal: Fernandes, G
Data de Publicação: 2021
Outros Autores: Sousa, C, Reis, J, Martins, N, Moura, CS, Guimarães, S, Justino, A, Pina, MJ, Magalhães, A, Queiroga, H, Marques, JA, Machado, JC, Costa, JL, Hespanhol, V
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
Texto Completo: https://hdl.handle.net/10216/153788
Resumo: Introduction: Cell-free DNA (cfDNA) analysis offers a non-invasive method to identify sensitising and resistance mutations in advanced Non-Small Cell Lung Cancer (NSCLC) patients. Next-generation sequencing (NGS) of circulating free DNA (cfDNA) is a valuable tool for mutations detection and disease' s clonal monitoring. Material and methods: An amplicon-based targeted gene NGS panel was used to analyse 101 plasma samples of advanced non-small cell lung cancer (NSCLC) patients with known oncogenic mutations, mostly EGFR mutations, serially collected at different clinically relevant time points of the disease. Results: The variant allelic frequency (VAF) monitoring in consecutive plasma samples demonstrated different molecular response and progression patterns. The decrease in or the clearance of the mutant alleles was associated with response and the increase in or the emergence of novel alterations with progression. At the best response, the median VAF was 0% (0.0% to 3.62%), lower than that at baseline, with a median of 0.53% (0.0% to 9.9%) (p = 0.004). At progression, the VAF was significantly higher (median 4.67; range: 0.0–36.9%) than that observed at the best response (p = 0.001) and baseline (p = 0.006). These variations anticipated radiographic changes in most cases, with a median time of 0.86 months. Overall, the VAF evolution of different oncogenic mutations predicts clinical outcomes. Conclusion: The targeted NGS of circulating tumour DNA (ctDNA) has clinical utility to monitor treatment response in patients with advanced lung adenocarcinoma.
id RCAP_84523e6ab33cfded425e7d87042c7add
oai_identifier_str oai:repositorio-aberto.up.pt:10216/153788
network_acronym_str RCAP
network_name_str Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
repository_id_str 7160
spelling Liquid biopsy for disease monitoring in non-small cell lung cancer: The link between biology and the clinicAdenocarcinomaCell-free DNAClinical outcomesLiquid biopsyLung cancerNext-generation sequencingTumour-free DNAIntroduction: Cell-free DNA (cfDNA) analysis offers a non-invasive method to identify sensitising and resistance mutations in advanced Non-Small Cell Lung Cancer (NSCLC) patients. Next-generation sequencing (NGS) of circulating free DNA (cfDNA) is a valuable tool for mutations detection and disease' s clonal monitoring. Material and methods: An amplicon-based targeted gene NGS panel was used to analyse 101 plasma samples of advanced non-small cell lung cancer (NSCLC) patients with known oncogenic mutations, mostly EGFR mutations, serially collected at different clinically relevant time points of the disease. Results: The variant allelic frequency (VAF) monitoring in consecutive plasma samples demonstrated different molecular response and progression patterns. The decrease in or the clearance of the mutant alleles was associated with response and the increase in or the emergence of novel alterations with progression. At the best response, the median VAF was 0% (0.0% to 3.62%), lower than that at baseline, with a median of 0.53% (0.0% to 9.9%) (p = 0.004). At progression, the VAF was significantly higher (median 4.67; range: 0.0–36.9%) than that observed at the best response (p = 0.001) and baseline (p = 0.006). These variations anticipated radiographic changes in most cases, with a median time of 0.86 months. Overall, the VAF evolution of different oncogenic mutations predicts clinical outcomes. Conclusion: The targeted NGS of circulating tumour DNA (ctDNA) has clinical utility to monitor treatment response in patients with advanced lung adenocarcinoma.MDPI20212021-01-01T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfhttps://hdl.handle.net/10216/153788eng2073-440910.3390/cells10081912Fernandes, GSousa, CReis, JMartins, NMoura, CSGuimarães, SJustino, APina, MJMagalhães, AQueiroga, HMarques, JAMachado, JCCosta, JLHespanhol, Vinfo:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2023-11-29T13:31:58Zoai:repositorio-aberto.up.pt:10216/153788Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-19T23:42:04.605086Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse
dc.title.none.fl_str_mv Liquid biopsy for disease monitoring in non-small cell lung cancer: The link between biology and the clinic
title Liquid biopsy for disease monitoring in non-small cell lung cancer: The link between biology and the clinic
spellingShingle Liquid biopsy for disease monitoring in non-small cell lung cancer: The link between biology and the clinic
Fernandes, G
Adenocarcinoma
Cell-free DNA
Clinical outcomes
Liquid biopsy
Lung cancer
Next-generation sequencing
Tumour-free DNA
title_short Liquid biopsy for disease monitoring in non-small cell lung cancer: The link between biology and the clinic
title_full Liquid biopsy for disease monitoring in non-small cell lung cancer: The link between biology and the clinic
title_fullStr Liquid biopsy for disease monitoring in non-small cell lung cancer: The link between biology and the clinic
title_full_unstemmed Liquid biopsy for disease monitoring in non-small cell lung cancer: The link between biology and the clinic
title_sort Liquid biopsy for disease monitoring in non-small cell lung cancer: The link between biology and the clinic
author Fernandes, G
author_facet Fernandes, G
Sousa, C
Reis, J
Martins, N
Moura, CS
Guimarães, S
Justino, A
Pina, MJ
Magalhães, A
Queiroga, H
Marques, JA
Machado, JC
Costa, JL
Hespanhol, V
author_role author
author2 Sousa, C
Reis, J
Martins, N
Moura, CS
Guimarães, S
Justino, A
Pina, MJ
Magalhães, A
Queiroga, H
Marques, JA
Machado, JC
Costa, JL
Hespanhol, V
author2_role author
author
author
author
author
author
author
author
author
author
author
author
author
dc.contributor.author.fl_str_mv Fernandes, G
Sousa, C
Reis, J
Martins, N
Moura, CS
Guimarães, S
Justino, A
Pina, MJ
Magalhães, A
Queiroga, H
Marques, JA
Machado, JC
Costa, JL
Hespanhol, V
dc.subject.por.fl_str_mv Adenocarcinoma
Cell-free DNA
Clinical outcomes
Liquid biopsy
Lung cancer
Next-generation sequencing
Tumour-free DNA
topic Adenocarcinoma
Cell-free DNA
Clinical outcomes
Liquid biopsy
Lung cancer
Next-generation sequencing
Tumour-free DNA
description Introduction: Cell-free DNA (cfDNA) analysis offers a non-invasive method to identify sensitising and resistance mutations in advanced Non-Small Cell Lung Cancer (NSCLC) patients. Next-generation sequencing (NGS) of circulating free DNA (cfDNA) is a valuable tool for mutations detection and disease' s clonal monitoring. Material and methods: An amplicon-based targeted gene NGS panel was used to analyse 101 plasma samples of advanced non-small cell lung cancer (NSCLC) patients with known oncogenic mutations, mostly EGFR mutations, serially collected at different clinically relevant time points of the disease. Results: The variant allelic frequency (VAF) monitoring in consecutive plasma samples demonstrated different molecular response and progression patterns. The decrease in or the clearance of the mutant alleles was associated with response and the increase in or the emergence of novel alterations with progression. At the best response, the median VAF was 0% (0.0% to 3.62%), lower than that at baseline, with a median of 0.53% (0.0% to 9.9%) (p = 0.004). At progression, the VAF was significantly higher (median 4.67; range: 0.0–36.9%) than that observed at the best response (p = 0.001) and baseline (p = 0.006). These variations anticipated radiographic changes in most cases, with a median time of 0.86 months. Overall, the VAF evolution of different oncogenic mutations predicts clinical outcomes. Conclusion: The targeted NGS of circulating tumour DNA (ctDNA) has clinical utility to monitor treatment response in patients with advanced lung adenocarcinoma.
publishDate 2021
dc.date.none.fl_str_mv 2021
2021-01-01T00:00:00Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv https://hdl.handle.net/10216/153788
url https://hdl.handle.net/10216/153788
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv 2073-4409
10.3390/cells10081912
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv MDPI
publisher.none.fl_str_mv MDPI
dc.source.none.fl_str_mv reponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
instacron:RCAAP
instname_str Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
instacron_str RCAAP
institution RCAAP
reponame_str Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
collection Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
repository.name.fl_str_mv Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
repository.mail.fl_str_mv
_version_ 1799135735761076225