A New Perspective for Vineyard Terroir Identity: Looking for Microbial Indicator Species by Long Read Nanopore Sequencing

Detalhes bibliográficos
Autor(a) principal: Cruz-Silva, Ana
Data de Publicação: 2023
Outros Autores: Laureano, Gonçalo, Pereira, Marcelo, Dias, Ricardo, Silva, José Moreira da, Oliveira, Nuno, Gouveia, Catarina, Cruz, Cristina, Gama-Carvalho, Margarida, Alagna, Fiammetta, Duarte, Bernardo, Figueiredo, Andreia
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
Texto Completo: http://hdl.handle.net/10451/59575
Resumo: Grapevine is one of the most important fruit crops worldwide, being Portugal one of the top wine producers. It is well established that wine sensory characteristics from a particular region are defined by the physiological responses of the grapevine to its environment and thus, the concept of terroir in viticulture was established. Among all the factors that contribute to terroir definition, soil microorganisms play a major role from nutrient recycling to a drastic influence on plant fitness (growth and protection) and of course wine production. Soil microbiome from four different terroirs in Quinta dos Murças vineyard was analysed through long-read Oxford Nanopore sequencing. We have developed an analytical pipeline that allows the identification of function, ecologies, and indicator species based on long read sequencing data. The Douro vineyard was used as a case study, and we were able to establish microbiome signatures of each terroir.
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spelling A New Perspective for Vineyard Terroir Identity: Looking for Microbial Indicator Species by Long Read Nanopore SequencingGrapevine is one of the most important fruit crops worldwide, being Portugal one of the top wine producers. It is well established that wine sensory characteristics from a particular region are defined by the physiological responses of the grapevine to its environment and thus, the concept of terroir in viticulture was established. Among all the factors that contribute to terroir definition, soil microorganisms play a major role from nutrient recycling to a drastic influence on plant fitness (growth and protection) and of course wine production. Soil microbiome from four different terroirs in Quinta dos Murças vineyard was analysed through long-read Oxford Nanopore sequencing. We have developed an analytical pipeline that allows the identification of function, ecologies, and indicator species based on long read sequencing data. The Douro vineyard was used as a case study, and we were able to establish microbiome signatures of each terroir.MDPIRepositório da Universidade de LisboaCruz-Silva, AnaLaureano, GonçaloPereira, MarceloDias, RicardoSilva, José Moreira daOliveira, NunoGouveia, CatarinaCruz, CristinaGama-Carvalho, MargaridaAlagna, FiammettaDuarte, BernardoFigueiredo, Andreia2023-10-06T16:28:31Z2023-032023-03-01T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfhttp://hdl.handle.net/10451/59575engCruz-Silva, A.; Laureano, G.; Pereira, M.; Dias, R.; Silva, J.M.d.; Oliveira, N.; Gouveia, C.; Cruz, C.; Gama-Carvalho, M.; Alagna, F.; et al. A New Perspective for Vineyard Terroir Identity: Looking for Microbial Indicator Species by Long Read Nanopore Sequencing. Microorganisms 2023, 11, 672. https://doi.org/10.3390/microorganisms1103067210.3390/microorganisms11030672info:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2023-11-08T17:08:58Zoai:repositorio.ul.pt:10451/59575Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-19T22:09:34.899258Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse
dc.title.none.fl_str_mv A New Perspective for Vineyard Terroir Identity: Looking for Microbial Indicator Species by Long Read Nanopore Sequencing
title A New Perspective for Vineyard Terroir Identity: Looking for Microbial Indicator Species by Long Read Nanopore Sequencing
spellingShingle A New Perspective for Vineyard Terroir Identity: Looking for Microbial Indicator Species by Long Read Nanopore Sequencing
Cruz-Silva, Ana
title_short A New Perspective for Vineyard Terroir Identity: Looking for Microbial Indicator Species by Long Read Nanopore Sequencing
title_full A New Perspective for Vineyard Terroir Identity: Looking for Microbial Indicator Species by Long Read Nanopore Sequencing
title_fullStr A New Perspective for Vineyard Terroir Identity: Looking for Microbial Indicator Species by Long Read Nanopore Sequencing
title_full_unstemmed A New Perspective for Vineyard Terroir Identity: Looking for Microbial Indicator Species by Long Read Nanopore Sequencing
title_sort A New Perspective for Vineyard Terroir Identity: Looking for Microbial Indicator Species by Long Read Nanopore Sequencing
author Cruz-Silva, Ana
author_facet Cruz-Silva, Ana
Laureano, Gonçalo
Pereira, Marcelo
Dias, Ricardo
Silva, José Moreira da
Oliveira, Nuno
Gouveia, Catarina
Cruz, Cristina
Gama-Carvalho, Margarida
Alagna, Fiammetta
Duarte, Bernardo
Figueiredo, Andreia
author_role author
author2 Laureano, Gonçalo
Pereira, Marcelo
Dias, Ricardo
Silva, José Moreira da
Oliveira, Nuno
Gouveia, Catarina
Cruz, Cristina
Gama-Carvalho, Margarida
Alagna, Fiammetta
Duarte, Bernardo
Figueiredo, Andreia
author2_role author
author
author
author
author
author
author
author
author
author
author
dc.contributor.none.fl_str_mv Repositório da Universidade de Lisboa
dc.contributor.author.fl_str_mv Cruz-Silva, Ana
Laureano, Gonçalo
Pereira, Marcelo
Dias, Ricardo
Silva, José Moreira da
Oliveira, Nuno
Gouveia, Catarina
Cruz, Cristina
Gama-Carvalho, Margarida
Alagna, Fiammetta
Duarte, Bernardo
Figueiredo, Andreia
description Grapevine is one of the most important fruit crops worldwide, being Portugal one of the top wine producers. It is well established that wine sensory characteristics from a particular region are defined by the physiological responses of the grapevine to its environment and thus, the concept of terroir in viticulture was established. Among all the factors that contribute to terroir definition, soil microorganisms play a major role from nutrient recycling to a drastic influence on plant fitness (growth and protection) and of course wine production. Soil microbiome from four different terroirs in Quinta dos Murças vineyard was analysed through long-read Oxford Nanopore sequencing. We have developed an analytical pipeline that allows the identification of function, ecologies, and indicator species based on long read sequencing data. The Douro vineyard was used as a case study, and we were able to establish microbiome signatures of each terroir.
publishDate 2023
dc.date.none.fl_str_mv 2023-10-06T16:28:31Z
2023-03
2023-03-01T00:00:00Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://hdl.handle.net/10451/59575
url http://hdl.handle.net/10451/59575
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Cruz-Silva, A.; Laureano, G.; Pereira, M.; Dias, R.; Silva, J.M.d.; Oliveira, N.; Gouveia, C.; Cruz, C.; Gama-Carvalho, M.; Alagna, F.; et al. A New Perspective for Vineyard Terroir Identity: Looking for Microbial Indicator Species by Long Read Nanopore Sequencing. Microorganisms 2023, 11, 672. https://doi.org/10.3390/microorganisms11030672
10.3390/microorganisms11030672
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
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dc.publisher.none.fl_str_mv MDPI
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reponame_str Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
collection Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
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