Developing gene-edited models to study mis-splicing in Hypertrophic Cardiomyopathy

Detalhes bibliográficos
Autor(a) principal: Furtado, Marta Isabel Brandão
Data de Publicação: 2019
Tipo de documento: Dissertação
Idioma: eng
Título da fonte: Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
Texto Completo: http://hdl.handle.net/10362/90817
Resumo: Exonic variants that cause abnormal mRNA splicing have been reported in human disease. However, this phenomenon is relatively unstudied in Hypertrophic Cardiomyopathy, a complex genetic cardiac disease with more than 1500 pathogenic mutations identified in over 14 genes. The lack of suitable models to study the causal mechanism of HCM-associated variants poses a drawback to the understanding of the molecular basis underlying this disease. The recent emergence of CRISPR/Cas9 and hiPSCs technologies are an exciting approach to generate disease models that better recapitulate the characteristics of the human heart. Three gene-edited clones harbouring the MYBPC3 c.1090G>A variant were generated using the CRISPR/Cas9 system. This variant is predicted to disrupt the recognition of the donor splice-site and lead to the skipping of exon 12. However, throughout the gene-editing process and due to long time in culture, these cells lost expression of pluripotency markers and could not be differentiated into cardiomyocytes to perform further experiments. In parallel, a patient-derived HCM cell line (Xutl, p.I1250fs) and Gibco and TCLab control lines were differentiated into cardiomyocytes using a 2D protocol. The hiPSCs-CMs obtained expressed high levels of fetal sarcomeric-genes TNNT2 and TTN isoforms, when compared to the adult human heart. Morphologically, they also displayed characteristics that are compatible to those of embryonic cardiomyocytes. Therefore, these hiPSCs-CMs have an immature phenotype and could not fully recapitulate the characteristics of adult cardiomyocytes. For disease-modelling purposes, mature hiPSCs-CMs that are comparable to those found in the adult heart are required and 3D differentiation protocols are some of the approaches being implemented. Even though optimization of the gene-editing and cardiac differentiation protocols is essential for the success of subsequent experiments, the work performed in this thesis provided important advances in the development of improved cellular models to study complex genetic diseases, such as HCM.
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spelling Developing gene-edited models to study mis-splicing in Hypertrophic Cardiomyopathycardiac differentiationCRISPR/Cas9human induced pluripotent stem cellshyperthrophic cardiomyopathysplicingDomínio/Área Científica::Engenharia e Tecnologia::Outras Engenharias e TecnologiasExonic variants that cause abnormal mRNA splicing have been reported in human disease. However, this phenomenon is relatively unstudied in Hypertrophic Cardiomyopathy, a complex genetic cardiac disease with more than 1500 pathogenic mutations identified in over 14 genes. The lack of suitable models to study the causal mechanism of HCM-associated variants poses a drawback to the understanding of the molecular basis underlying this disease. The recent emergence of CRISPR/Cas9 and hiPSCs technologies are an exciting approach to generate disease models that better recapitulate the characteristics of the human heart. Three gene-edited clones harbouring the MYBPC3 c.1090G>A variant were generated using the CRISPR/Cas9 system. This variant is predicted to disrupt the recognition of the donor splice-site and lead to the skipping of exon 12. However, throughout the gene-editing process and due to long time in culture, these cells lost expression of pluripotency markers and could not be differentiated into cardiomyocytes to perform further experiments. In parallel, a patient-derived HCM cell line (Xutl, p.I1250fs) and Gibco and TCLab control lines were differentiated into cardiomyocytes using a 2D protocol. The hiPSCs-CMs obtained expressed high levels of fetal sarcomeric-genes TNNT2 and TTN isoforms, when compared to the adult human heart. Morphologically, they also displayed characteristics that are compatible to those of embryonic cardiomyocytes. Therefore, these hiPSCs-CMs have an immature phenotype and could not fully recapitulate the characteristics of adult cardiomyocytes. For disease-modelling purposes, mature hiPSCs-CMs that are comparable to those found in the adult heart are required and 3D differentiation protocols are some of the approaches being implemented. Even though optimization of the gene-editing and cardiac differentiation protocols is essential for the success of subsequent experiments, the work performed in this thesis provided important advances in the development of improved cellular models to study complex genetic diseases, such as HCM.Martins, SandraGonçalves, Maria TeresaRUNFurtado, Marta Isabel Brandão2022-01-07T01:30:32Z2019-12-1320192019-12-13T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/masterThesisapplication/pdfhttp://hdl.handle.net/10362/90817enginfo:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2024-03-11T04:40:19Zoai:run.unl.pt:10362/90817Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-20T03:37:11.165379Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse
dc.title.none.fl_str_mv Developing gene-edited models to study mis-splicing in Hypertrophic Cardiomyopathy
title Developing gene-edited models to study mis-splicing in Hypertrophic Cardiomyopathy
spellingShingle Developing gene-edited models to study mis-splicing in Hypertrophic Cardiomyopathy
Furtado, Marta Isabel Brandão
cardiac differentiation
CRISPR/Cas9
human induced pluripotent stem cells
hyperthrophic cardiomyopathy
splicing
Domínio/Área Científica::Engenharia e Tecnologia::Outras Engenharias e Tecnologias
title_short Developing gene-edited models to study mis-splicing in Hypertrophic Cardiomyopathy
title_full Developing gene-edited models to study mis-splicing in Hypertrophic Cardiomyopathy
title_fullStr Developing gene-edited models to study mis-splicing in Hypertrophic Cardiomyopathy
title_full_unstemmed Developing gene-edited models to study mis-splicing in Hypertrophic Cardiomyopathy
title_sort Developing gene-edited models to study mis-splicing in Hypertrophic Cardiomyopathy
author Furtado, Marta Isabel Brandão
author_facet Furtado, Marta Isabel Brandão
author_role author
dc.contributor.none.fl_str_mv Martins, Sandra
Gonçalves, Maria Teresa
RUN
dc.contributor.author.fl_str_mv Furtado, Marta Isabel Brandão
dc.subject.por.fl_str_mv cardiac differentiation
CRISPR/Cas9
human induced pluripotent stem cells
hyperthrophic cardiomyopathy
splicing
Domínio/Área Científica::Engenharia e Tecnologia::Outras Engenharias e Tecnologias
topic cardiac differentiation
CRISPR/Cas9
human induced pluripotent stem cells
hyperthrophic cardiomyopathy
splicing
Domínio/Área Científica::Engenharia e Tecnologia::Outras Engenharias e Tecnologias
description Exonic variants that cause abnormal mRNA splicing have been reported in human disease. However, this phenomenon is relatively unstudied in Hypertrophic Cardiomyopathy, a complex genetic cardiac disease with more than 1500 pathogenic mutations identified in over 14 genes. The lack of suitable models to study the causal mechanism of HCM-associated variants poses a drawback to the understanding of the molecular basis underlying this disease. The recent emergence of CRISPR/Cas9 and hiPSCs technologies are an exciting approach to generate disease models that better recapitulate the characteristics of the human heart. Three gene-edited clones harbouring the MYBPC3 c.1090G>A variant were generated using the CRISPR/Cas9 system. This variant is predicted to disrupt the recognition of the donor splice-site and lead to the skipping of exon 12. However, throughout the gene-editing process and due to long time in culture, these cells lost expression of pluripotency markers and could not be differentiated into cardiomyocytes to perform further experiments. In parallel, a patient-derived HCM cell line (Xutl, p.I1250fs) and Gibco and TCLab control lines were differentiated into cardiomyocytes using a 2D protocol. The hiPSCs-CMs obtained expressed high levels of fetal sarcomeric-genes TNNT2 and TTN isoforms, when compared to the adult human heart. Morphologically, they also displayed characteristics that are compatible to those of embryonic cardiomyocytes. Therefore, these hiPSCs-CMs have an immature phenotype and could not fully recapitulate the characteristics of adult cardiomyocytes. For disease-modelling purposes, mature hiPSCs-CMs that are comparable to those found in the adult heart are required and 3D differentiation protocols are some of the approaches being implemented. Even though optimization of the gene-editing and cardiac differentiation protocols is essential for the success of subsequent experiments, the work performed in this thesis provided important advances in the development of improved cellular models to study complex genetic diseases, such as HCM.
publishDate 2019
dc.date.none.fl_str_mv 2019-12-13
2019
2019-12-13T00:00:00Z
2022-01-07T01:30:32Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/masterThesis
format masterThesis
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://hdl.handle.net/10362/90817
url http://hdl.handle.net/10362/90817
dc.language.iso.fl_str_mv eng
language eng
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
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dc.format.none.fl_str_mv application/pdf
dc.source.none.fl_str_mv reponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
instacron:RCAAP
instname_str Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
instacron_str RCAAP
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