Phage-host interaction analysis by flow cytometry allows for rapid and efficient screening of phages

Detalhes bibliográficos
Autor(a) principal: Melo, Luís Daniel Rodrigues
Data de Publicação: 2022
Outros Autores: Monteiro, Rodrigo, Pires, Diana Priscila Penso, Azeredo, Joana
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
Texto Completo: http://hdl.handle.net/1822/75736
Resumo: Recently, phages have become popular as an alternative to antibiotics. This increased demand for phage therapy needs rapid and efficient methods to screen phages infecting specific hosts. Existing methods are time-consuming, and for clinical purposes, novel, quick, and reliable screening methods are highly needed. Flow cytometry (FC) allows a quick differentiation and enumeration of bacterial cell populations and has been used to assess in vitro the activity of antimicrobial compounds. In this work, we propose FC as a rapid and reliable method to assess the susceptibility of a bacterial population to phage infection. For that, the interaction of phages vB_PaeM_CEB_DP1 and vB_PaeP_PE3 with Pseudomonas aeruginosa PAO1 was characterized by FC. Synchronous infection assays were performed, and samples were collected at different time points and stained with SYTO BC and PI before analysis. Part of the collected samples was used to characterize the expression of early, middle, and late genes by qPCR. Both FC and qPCR results were correlated with phage propagation assays. Results showed that SYTO BC median fluorescence intensity (MFI) values increased in the first 25 min of PE3 and DP1 infection. The increase of fluorescence is due to the expression of phage genes observed by qPCR. Since SYTO BC MFI values increase with gene expression, it allows the determination of host susceptibility to a phage in a short period of time, avoiding false positives caused by lysis from without. In conclusion, this method may allow for a quick and high-throughput real-time screening of different phages to a specific host, which can be crucial for a quick phage selection in clinical practice.
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spelling Phage-host interaction analysis by flow cytometry allows for rapid and efficient screening of phagesPseudomonas aeruginosaPhagesFlow cytometryPhagehost interactionsScience & TechnologyRecently, phages have become popular as an alternative to antibiotics. This increased demand for phage therapy needs rapid and efficient methods to screen phages infecting specific hosts. Existing methods are time-consuming, and for clinical purposes, novel, quick, and reliable screening methods are highly needed. Flow cytometry (FC) allows a quick differentiation and enumeration of bacterial cell populations and has been used to assess in vitro the activity of antimicrobial compounds. In this work, we propose FC as a rapid and reliable method to assess the susceptibility of a bacterial population to phage infection. For that, the interaction of phages vB_PaeM_CEB_DP1 and vB_PaeP_PE3 with Pseudomonas aeruginosa PAO1 was characterized by FC. Synchronous infection assays were performed, and samples were collected at different time points and stained with SYTO BC and PI before analysis. Part of the collected samples was used to characterize the expression of early, middle, and late genes by qPCR. Both FC and qPCR results were correlated with phage propagation assays. Results showed that SYTO BC median fluorescence intensity (MFI) values increased in the first 25 min of PE3 and DP1 infection. The increase of fluorescence is due to the expression of phage genes observed by qPCR. Since SYTO BC MFI values increase with gene expression, it allows the determination of host susceptibility to a phage in a short period of time, avoiding false positives caused by lysis from without. In conclusion, this method may allow for a quick and high-throughput real-time screening of different phages to a specific host, which can be crucial for a quick phage selection in clinical practice.This study was supported by the Portuguese Foundation for Science and Technology (FCT) under the scope of the strategic funding of UIDB/04469/2020 unit, and Projects PTDC/SAU PUB/29182/2017 [POCI-01-0145-FEDER-029182] and PTDC/BIA-MIC/2312/2020. RM is recipient of a FCT PhD grant with the reference SFRH/BD/143639/2019.info:eu-repo/semantics/publishedVersionMDPI AGUniversidade do MinhoMelo, Luís Daniel RodriguesMonteiro, RodrigoPires, Diana Priscila PensoAzeredo, Joana2022-01-272022-01-27T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfhttp://hdl.handle.net/1822/75736engMelo, Luís Daniel Rodrigues; Monteiro, Rodrigo; Pires, Diana P.; Azeredo, Joana, Phage-host interaction analysis by flow cytometry allows for rapid and efficient screening of phages. Antibiotics, 11(2), 164, 20222079-638210.3390/antibiotics11020164https://www.mdpi.com/2079-6382/11/2/164info:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2023-07-21T11:56:55Zoai:repositorium.sdum.uminho.pt:1822/75736Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-19T18:46:36.363483Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse
dc.title.none.fl_str_mv Phage-host interaction analysis by flow cytometry allows for rapid and efficient screening of phages
title Phage-host interaction analysis by flow cytometry allows for rapid and efficient screening of phages
spellingShingle Phage-host interaction analysis by flow cytometry allows for rapid and efficient screening of phages
Melo, Luís Daniel Rodrigues
Pseudomonas aeruginosa
Phages
Flow cytometry
Phagehost interactions
Science & Technology
title_short Phage-host interaction analysis by flow cytometry allows for rapid and efficient screening of phages
title_full Phage-host interaction analysis by flow cytometry allows for rapid and efficient screening of phages
title_fullStr Phage-host interaction analysis by flow cytometry allows for rapid and efficient screening of phages
title_full_unstemmed Phage-host interaction analysis by flow cytometry allows for rapid and efficient screening of phages
title_sort Phage-host interaction analysis by flow cytometry allows for rapid and efficient screening of phages
author Melo, Luís Daniel Rodrigues
author_facet Melo, Luís Daniel Rodrigues
Monteiro, Rodrigo
Pires, Diana Priscila Penso
Azeredo, Joana
author_role author
author2 Monteiro, Rodrigo
Pires, Diana Priscila Penso
Azeredo, Joana
author2_role author
author
author
dc.contributor.none.fl_str_mv Universidade do Minho
dc.contributor.author.fl_str_mv Melo, Luís Daniel Rodrigues
Monteiro, Rodrigo
Pires, Diana Priscila Penso
Azeredo, Joana
dc.subject.por.fl_str_mv Pseudomonas aeruginosa
Phages
Flow cytometry
Phagehost interactions
Science & Technology
topic Pseudomonas aeruginosa
Phages
Flow cytometry
Phagehost interactions
Science & Technology
description Recently, phages have become popular as an alternative to antibiotics. This increased demand for phage therapy needs rapid and efficient methods to screen phages infecting specific hosts. Existing methods are time-consuming, and for clinical purposes, novel, quick, and reliable screening methods are highly needed. Flow cytometry (FC) allows a quick differentiation and enumeration of bacterial cell populations and has been used to assess in vitro the activity of antimicrobial compounds. In this work, we propose FC as a rapid and reliable method to assess the susceptibility of a bacterial population to phage infection. For that, the interaction of phages vB_PaeM_CEB_DP1 and vB_PaeP_PE3 with Pseudomonas aeruginosa PAO1 was characterized by FC. Synchronous infection assays were performed, and samples were collected at different time points and stained with SYTO BC and PI before analysis. Part of the collected samples was used to characterize the expression of early, middle, and late genes by qPCR. Both FC and qPCR results were correlated with phage propagation assays. Results showed that SYTO BC median fluorescence intensity (MFI) values increased in the first 25 min of PE3 and DP1 infection. The increase of fluorescence is due to the expression of phage genes observed by qPCR. Since SYTO BC MFI values increase with gene expression, it allows the determination of host susceptibility to a phage in a short period of time, avoiding false positives caused by lysis from without. In conclusion, this method may allow for a quick and high-throughput real-time screening of different phages to a specific host, which can be crucial for a quick phage selection in clinical practice.
publishDate 2022
dc.date.none.fl_str_mv 2022-01-27
2022-01-27T00:00:00Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://hdl.handle.net/1822/75736
url http://hdl.handle.net/1822/75736
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Melo, Luís Daniel Rodrigues; Monteiro, Rodrigo; Pires, Diana P.; Azeredo, Joana, Phage-host interaction analysis by flow cytometry allows for rapid and efficient screening of phages. Antibiotics, 11(2), 164, 2022
2079-6382
10.3390/antibiotics11020164
https://www.mdpi.com/2079-6382/11/2/164
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
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dc.publisher.none.fl_str_mv MDPI AG
publisher.none.fl_str_mv MDPI AG
dc.source.none.fl_str_mv reponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
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instname_str Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
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