Phage-host interaction analysis by flow cytometry allows for rapid and efficient screening of phages
Autor(a) principal: | |
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Data de Publicação: | 2022 |
Outros Autores: | , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) |
Texto Completo: | http://hdl.handle.net/1822/75736 |
Resumo: | Recently, phages have become popular as an alternative to antibiotics. This increased demand for phage therapy needs rapid and efficient methods to screen phages infecting specific hosts. Existing methods are time-consuming, and for clinical purposes, novel, quick, and reliable screening methods are highly needed. Flow cytometry (FC) allows a quick differentiation and enumeration of bacterial cell populations and has been used to assess in vitro the activity of antimicrobial compounds. In this work, we propose FC as a rapid and reliable method to assess the susceptibility of a bacterial population to phage infection. For that, the interaction of phages vB_PaeM_CEB_DP1 and vB_PaeP_PE3 with Pseudomonas aeruginosa PAO1 was characterized by FC. Synchronous infection assays were performed, and samples were collected at different time points and stained with SYTO BC and PI before analysis. Part of the collected samples was used to characterize the expression of early, middle, and late genes by qPCR. Both FC and qPCR results were correlated with phage propagation assays. Results showed that SYTO BC median fluorescence intensity (MFI) values increased in the first 25 min of PE3 and DP1 infection. The increase of fluorescence is due to the expression of phage genes observed by qPCR. Since SYTO BC MFI values increase with gene expression, it allows the determination of host susceptibility to a phage in a short period of time, avoiding false positives caused by lysis from without. In conclusion, this method may allow for a quick and high-throughput real-time screening of different phages to a specific host, which can be crucial for a quick phage selection in clinical practice. |
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Phage-host interaction analysis by flow cytometry allows for rapid and efficient screening of phagesPseudomonas aeruginosaPhagesFlow cytometryPhagehost interactionsScience & TechnologyRecently, phages have become popular as an alternative to antibiotics. This increased demand for phage therapy needs rapid and efficient methods to screen phages infecting specific hosts. Existing methods are time-consuming, and for clinical purposes, novel, quick, and reliable screening methods are highly needed. Flow cytometry (FC) allows a quick differentiation and enumeration of bacterial cell populations and has been used to assess in vitro the activity of antimicrobial compounds. In this work, we propose FC as a rapid and reliable method to assess the susceptibility of a bacterial population to phage infection. For that, the interaction of phages vB_PaeM_CEB_DP1 and vB_PaeP_PE3 with Pseudomonas aeruginosa PAO1 was characterized by FC. Synchronous infection assays were performed, and samples were collected at different time points and stained with SYTO BC and PI before analysis. Part of the collected samples was used to characterize the expression of early, middle, and late genes by qPCR. Both FC and qPCR results were correlated with phage propagation assays. Results showed that SYTO BC median fluorescence intensity (MFI) values increased in the first 25 min of PE3 and DP1 infection. The increase of fluorescence is due to the expression of phage genes observed by qPCR. Since SYTO BC MFI values increase with gene expression, it allows the determination of host susceptibility to a phage in a short period of time, avoiding false positives caused by lysis from without. In conclusion, this method may allow for a quick and high-throughput real-time screening of different phages to a specific host, which can be crucial for a quick phage selection in clinical practice.This study was supported by the Portuguese Foundation for Science and Technology (FCT) under the scope of the strategic funding of UIDB/04469/2020 unit, and Projects PTDC/SAU PUB/29182/2017 [POCI-01-0145-FEDER-029182] and PTDC/BIA-MIC/2312/2020. RM is recipient of a FCT PhD grant with the reference SFRH/BD/143639/2019.info:eu-repo/semantics/publishedVersionMDPI AGUniversidade do MinhoMelo, Luís Daniel RodriguesMonteiro, RodrigoPires, Diana Priscila PensoAzeredo, Joana2022-01-272022-01-27T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfhttp://hdl.handle.net/1822/75736engMelo, Luís Daniel Rodrigues; Monteiro, Rodrigo; Pires, Diana P.; Azeredo, Joana, Phage-host interaction analysis by flow cytometry allows for rapid and efficient screening of phages. Antibiotics, 11(2), 164, 20222079-638210.3390/antibiotics11020164https://www.mdpi.com/2079-6382/11/2/164info:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2023-07-21T11:56:55Zoai:repositorium.sdum.uminho.pt:1822/75736Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-19T18:46:36.363483Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse |
dc.title.none.fl_str_mv |
Phage-host interaction analysis by flow cytometry allows for rapid and efficient screening of phages |
title |
Phage-host interaction analysis by flow cytometry allows for rapid and efficient screening of phages |
spellingShingle |
Phage-host interaction analysis by flow cytometry allows for rapid and efficient screening of phages Melo, Luís Daniel Rodrigues Pseudomonas aeruginosa Phages Flow cytometry Phagehost interactions Science & Technology |
title_short |
Phage-host interaction analysis by flow cytometry allows for rapid and efficient screening of phages |
title_full |
Phage-host interaction analysis by flow cytometry allows for rapid and efficient screening of phages |
title_fullStr |
Phage-host interaction analysis by flow cytometry allows for rapid and efficient screening of phages |
title_full_unstemmed |
Phage-host interaction analysis by flow cytometry allows for rapid and efficient screening of phages |
title_sort |
Phage-host interaction analysis by flow cytometry allows for rapid and efficient screening of phages |
author |
Melo, Luís Daniel Rodrigues |
author_facet |
Melo, Luís Daniel Rodrigues Monteiro, Rodrigo Pires, Diana Priscila Penso Azeredo, Joana |
author_role |
author |
author2 |
Monteiro, Rodrigo Pires, Diana Priscila Penso Azeredo, Joana |
author2_role |
author author author |
dc.contributor.none.fl_str_mv |
Universidade do Minho |
dc.contributor.author.fl_str_mv |
Melo, Luís Daniel Rodrigues Monteiro, Rodrigo Pires, Diana Priscila Penso Azeredo, Joana |
dc.subject.por.fl_str_mv |
Pseudomonas aeruginosa Phages Flow cytometry Phagehost interactions Science & Technology |
topic |
Pseudomonas aeruginosa Phages Flow cytometry Phagehost interactions Science & Technology |
description |
Recently, phages have become popular as an alternative to antibiotics. This increased demand for phage therapy needs rapid and efficient methods to screen phages infecting specific hosts. Existing methods are time-consuming, and for clinical purposes, novel, quick, and reliable screening methods are highly needed. Flow cytometry (FC) allows a quick differentiation and enumeration of bacterial cell populations and has been used to assess in vitro the activity of antimicrobial compounds. In this work, we propose FC as a rapid and reliable method to assess the susceptibility of a bacterial population to phage infection. For that, the interaction of phages vB_PaeM_CEB_DP1 and vB_PaeP_PE3 with Pseudomonas aeruginosa PAO1 was characterized by FC. Synchronous infection assays were performed, and samples were collected at different time points and stained with SYTO BC and PI before analysis. Part of the collected samples was used to characterize the expression of early, middle, and late genes by qPCR. Both FC and qPCR results were correlated with phage propagation assays. Results showed that SYTO BC median fluorescence intensity (MFI) values increased in the first 25 min of PE3 and DP1 infection. The increase of fluorescence is due to the expression of phage genes observed by qPCR. Since SYTO BC MFI values increase with gene expression, it allows the determination of host susceptibility to a phage in a short period of time, avoiding false positives caused by lysis from without. In conclusion, this method may allow for a quick and high-throughput real-time screening of different phages to a specific host, which can be crucial for a quick phage selection in clinical practice. |
publishDate |
2022 |
dc.date.none.fl_str_mv |
2022-01-27 2022-01-27T00:00:00Z |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://hdl.handle.net/1822/75736 |
url |
http://hdl.handle.net/1822/75736 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
Melo, Luís Daniel Rodrigues; Monteiro, Rodrigo; Pires, Diana P.; Azeredo, Joana, Phage-host interaction analysis by flow cytometry allows for rapid and efficient screening of phages. Antibiotics, 11(2), 164, 2022 2079-6382 10.3390/antibiotics11020164 https://www.mdpi.com/2079-6382/11/2/164 |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
application/pdf |
dc.publisher.none.fl_str_mv |
MDPI AG |
publisher.none.fl_str_mv |
MDPI AG |
dc.source.none.fl_str_mv |
reponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação instacron:RCAAP |
instname_str |
Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação |
instacron_str |
RCAAP |
institution |
RCAAP |
reponame_str |
Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) |
collection |
Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) |
repository.name.fl_str_mv |
Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação |
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