A ranking system for reference libraries of DNA barcodes: application to marine fish species from Portugal

Detalhes bibliográficos
Autor(a) principal: Costa, Filipe O.
Data de Publicação: 2012
Outros Autores: Landi, Mónica, Martins, Rogelia, Costa, Maria H., Costa, Maria E., Carneiro, Miguel, Alves, Maria J., Steinke, Dirk, Carvalho, Gary R.
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
Texto Completo: http://hdl.handle.net/1822/62845
Resumo: The increasing availability of reference libraries of DNA barcodes (RLDB) offers the opportunity to the screen the level of consistency in DNA barcode data among libraries, in order to detect possible disagreements generated from taxonomic uncertainty or operational shortcomings. We propose a ranking system to attribute a confidence level to species identifications associated with DNA barcode records from a RLDB. Here we apply the proposed ranking system to a newly generated RLDB for marine fish of Portugal.
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spelling A ranking system for reference libraries of DNA barcodes: application to marine fish species from PortugalAnimalsAquatic OrganismsDNA Barcoding, TaxonomicDNA, MitochondrialElectron Transport Complex IVFishesGene LibraryPhylogenyPhylogeographyPortugalScience & TechnologyThe increasing availability of reference libraries of DNA barcodes (RLDB) offers the opportunity to the screen the level of consistency in DNA barcode data among libraries, in order to detect possible disagreements generated from taxonomic uncertainty or operational shortcomings. We propose a ranking system to attribute a confidence level to species identifications associated with DNA barcode records from a RLDB. Here we apply the proposed ranking system to a newly generated RLDB for marine fish of Portugal.This work was supported by FEDER through POFC-COMPETE and by national funds from ‘‘Fundação para a Ciência e a Tecnologia (FCT)’’ in the scope of the grants FCOMP-01-0124-FEDER-007381, FCOMP-01-0124-FEDER-010596 and PEst-C/BIA/UI4050/2011. FOC benefitted from Marie Curie Fellowship MEIF-CT2005-024966 and from an European Reintegration Grant PERG02-GA–2007-224890 provided by the European Commission. ML benefit from a fellowship (SFRH/BPD/45246/2008) granted by the FCT. Sequencing at the Biodiversity Institute of Ontario was supported by funding to the International Barcode of Life Project (iBOL) through the Canadian Centre for DNA Barcoding, from the Ontario Genomics Institute (2008-OGI-ICI-03), Genome Canada, the Ontario Ministry of Research and Innovation, and the Natural Sciences and Engineering Research Council of Canada. DS was supported by funding from the Alfred P. Sloan Foundation to MarBOL. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.Public Library of Science (PLOS)Universidade do MinhoCosta, Filipe O.Landi, MónicaMartins, RogeliaCosta, Maria H.Costa, Maria E.Carneiro, MiguelAlves, Maria J.Steinke, DirkCarvalho, Gary R.20122012-01-01T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfhttp://hdl.handle.net/1822/62845eng1932-620310.1371/journal.pone.003585822558244https://journals.plos.org/plosone/article/authors?id=10.1371/journal.pone.0035858info:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2023-07-21T12:37:44Zoai:repositorium.sdum.uminho.pt:1822/62845Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-19T19:34:04.050694Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse
dc.title.none.fl_str_mv A ranking system for reference libraries of DNA barcodes: application to marine fish species from Portugal
title A ranking system for reference libraries of DNA barcodes: application to marine fish species from Portugal
spellingShingle A ranking system for reference libraries of DNA barcodes: application to marine fish species from Portugal
Costa, Filipe O.
Animals
Aquatic Organisms
DNA Barcoding, Taxonomic
DNA, Mitochondrial
Electron Transport Complex IV
Fishes
Gene Library
Phylogeny
Phylogeography
Portugal
Science & Technology
title_short A ranking system for reference libraries of DNA barcodes: application to marine fish species from Portugal
title_full A ranking system for reference libraries of DNA barcodes: application to marine fish species from Portugal
title_fullStr A ranking system for reference libraries of DNA barcodes: application to marine fish species from Portugal
title_full_unstemmed A ranking system for reference libraries of DNA barcodes: application to marine fish species from Portugal
title_sort A ranking system for reference libraries of DNA barcodes: application to marine fish species from Portugal
author Costa, Filipe O.
author_facet Costa, Filipe O.
Landi, Mónica
Martins, Rogelia
Costa, Maria H.
Costa, Maria E.
Carneiro, Miguel
Alves, Maria J.
Steinke, Dirk
Carvalho, Gary R.
author_role author
author2 Landi, Mónica
Martins, Rogelia
Costa, Maria H.
Costa, Maria E.
Carneiro, Miguel
Alves, Maria J.
Steinke, Dirk
Carvalho, Gary R.
author2_role author
author
author
author
author
author
author
author
dc.contributor.none.fl_str_mv Universidade do Minho
dc.contributor.author.fl_str_mv Costa, Filipe O.
Landi, Mónica
Martins, Rogelia
Costa, Maria H.
Costa, Maria E.
Carneiro, Miguel
Alves, Maria J.
Steinke, Dirk
Carvalho, Gary R.
dc.subject.por.fl_str_mv Animals
Aquatic Organisms
DNA Barcoding, Taxonomic
DNA, Mitochondrial
Electron Transport Complex IV
Fishes
Gene Library
Phylogeny
Phylogeography
Portugal
Science & Technology
topic Animals
Aquatic Organisms
DNA Barcoding, Taxonomic
DNA, Mitochondrial
Electron Transport Complex IV
Fishes
Gene Library
Phylogeny
Phylogeography
Portugal
Science & Technology
description The increasing availability of reference libraries of DNA barcodes (RLDB) offers the opportunity to the screen the level of consistency in DNA barcode data among libraries, in order to detect possible disagreements generated from taxonomic uncertainty or operational shortcomings. We propose a ranking system to attribute a confidence level to species identifications associated with DNA barcode records from a RLDB. Here we apply the proposed ranking system to a newly generated RLDB for marine fish of Portugal.
publishDate 2012
dc.date.none.fl_str_mv 2012
2012-01-01T00:00:00Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://hdl.handle.net/1822/62845
url http://hdl.handle.net/1822/62845
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv 1932-6203
10.1371/journal.pone.0035858
22558244
https://journals.plos.org/plosone/article/authors?id=10.1371/journal.pone.0035858
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Public Library of Science (PLOS)
publisher.none.fl_str_mv Public Library of Science (PLOS)
dc.source.none.fl_str_mv reponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
instacron:RCAAP
instname_str Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
instacron_str RCAAP
institution RCAAP
reponame_str Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
collection Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
repository.name.fl_str_mv Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
repository.mail.fl_str_mv
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